RchiOBHm_Chr2g0157061

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003425
Physical Location & Seq
Reverse (-)
73525796 .. 73526292
497 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGTAATGTTCAATAACAGAACAATTGATCGAACTAACAGGATGCCACTGAAGCATGCCGAGCTGATAACTTCTGGGACATATACATGCAGTGATTGTTATGAGAAACTGATCGCATTCCTCTTGTACTGGTTTCGGGTTTCAGTTTCTGCACCTCATCTTCCCCCAGATGCATCAAAAAGGGAAAATTGCTGGTATGGATATGCATGTCGAACACAGCACCATAATGAAGACCATGCTCGTAAAAGGAATCATGTATGCCGGCTGACTAGGGGTGCTAATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000278 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036094 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045786 GO:0045862 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051726 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903047 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-RING_2

Protein Analysis

95

Amino Acids

11.19

Weight (kDa)

9.33

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CRD PF17979 3 - 48 4.6e-07 Cysteine rich domain with multizinc binding regions
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 237
BfaI CTAG 1 cut(s) 270
BmsI GCATC 3 cut(s) 33, 160, 182
BpiI GAAGAC 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 28, 111
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 261
BssMI GATC 2 cut(s) 28, 111
BstC8I GCNNGC 2 cut(s) 57, 263
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 31, 114
BstMBI GATC 2 cut(s) 28, 111
BstMWI GCNNNNNNNGC 2 cut(s) 52, 61
BstNSI RCATGY 3 cut(s) 59, 90, 210
BstV2I GAAGAC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 47, 97
Cac8I GCNNGC 2 cut(s) 57, 263
CaiI CAGNNNCTG 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 261
Csp6I GTAC 1 cut(s) 127
CviAII CATG 5 cut(s) 56, 87, 207, 236, 254
CviJI RGCY 2 cut(s) 64, 265
CviKI_1 RGCY 2 cut(s) 64, 265
CviQI GTAC 1 cut(s) 127
DpnI GATC 2 cut(s) 30, 113
DpnII GATC 2 cut(s) 28, 111
Eco57I CTGAAG 1 cut(s) 71
EcoT22I ATGCAT 2 cut(s) 175, 208
FaeI CATG 5 cut(s) 59, 90, 210, 239, 257
FaqI GGGAC 1 cut(s) 91
FatI CATG 5 cut(s) 55, 86, 206, 235, 253
FokI GGATG 1 cut(s) 55
FspBI CTAG 1 cut(s) 270
HapII CCGG 1 cut(s) 262
Hin1II CATG 5 cut(s) 59, 90, 210, 239, 257
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 262
HpyCH4V TGCA 4 cut(s) 90, 152, 173, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 61
Hsp92II CATG 5 cut(s) 59, 90, 210, 239, 257
KroI GCCGGC 1 cut(s) 261
KroNI GCCGGC 1 cut(s) 263
Kzo9I GATC 2 cut(s) 28, 111
LpnPI CCDG 6 cut(s) 25, 60, 115, 178, 180, 275
LweI GCATC 3 cut(s) 33, 160, 182
MaeI CTAG 1 cut(s) 270
MalI GATC 2 cut(s) 30, 113
MboI GATC 2 cut(s) 28, 111
MboII GAAGA 2 cut(s) 152, 242
MfeI CAATTG 1 cut(s) 24
MluCI AATT 2 cut(s) 24, 187
MnlI CCTC 2 cut(s) 131, 165
Mph1103I ATGCAT 2 cut(s) 175, 208
MroNI GCCGGC 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 85, 225
MspI CCGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 52, 61
NaeI GCCGGC 1 cut(s) 263
NdeII GATC 2 cut(s) 28, 111
NgoMIV GCCGGC 1 cut(s) 261
NlaIII CATG 5 cut(s) 59, 90, 210, 239, 257
NmeAIII GCCGAG 1 cut(s) 85
NsiI ATGCAT 2 cut(s) 175, 208
NspI RCATGY 3 cut(s) 59, 90, 210
PaeI GCATGC 1 cut(s) 59
PctI GAATGC 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 2 cut(s) 85, 225
Sau3AI GATC 2 cut(s) 28, 111
SetI ASST 2 cut(s) 66, 157
SfaNI GCATC 3 cut(s) 33, 160, 182
SmiMI CAYNNNNRTG 2 cut(s) 85, 225
SphI GCATGC 1 cut(s) 59
Sse9I AATT 2 cut(s) 24, 187
SspMI CTAG 1 cut(s) 270
TaqI TCGA 2 cut(s) 31, 211
TasI AATT 2 cut(s) 24, 187
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 2 cut(s) 54, 97
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 2 cut(s) 54, 97
XceI RCATGY 3 cut(s) 59, 90, 210
XspI CTAG 1 cut(s) 270
Zsp2I ATGCAT 2 cut(s) 175, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.