Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Forward (+)

74475472 .. 74478264

Gene Structure 2793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCTTGATTGGGATCGTTGGTTGGTGAAATGGCGAGTGGAGTTTTGGGGGAGGGAATGGAACTTTGTGGACATAGCCACTTTCAGTAGCCTCAGAAGTCCACTTGATTGGGTGAGCATACACAGATCCCACCATCAATTTACAGATACAGTGAAAGACCCTCATAGCCCAGTTAGAGGATTTTGGTTTAGTCATGTTGGTTGGACACTCAATTACCATGGTCGAAATAGATGGAGTGAGGATGGTACTTTATCTCCATGTTACATTTGGATTAAATTCAATTTGCCATACATGGGACAACAAGTATGGGAAACTGGTGATTTATCAAGAAACAACTGGTTCCTTGGATTGCTGGCACATGGAGAAGGTTGGCATAACAATCACCATGCTTTTCAGCACTCTGCTCGACACGGCTTGGAATGGTGGCAAATTGATGTTACTTGGTATGTCATAAGATTTCTTGAACTTGTGGCTTTGGTAACAGAAGTGAAGCTTCCAACTGAGACTCAGAAGAAACAAAGAGCCTTAAGAAACATGATGATCCACGAGGAAAAGCACCAGCAGCTTGAAGCAAAAGTCCAAAATGGCAACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

198

Amino Acids

23.91

Weight (kDa)

7.28

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	21, 120, 535
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	176, 293
AflII	CTTAAG	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	280, 464, 569
AluBI	AGCT	2 cut(s)	493, 565
AluI	AGCT	2 cut(s)	493, 565
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	3 cut(s)	21, 120, 535
ApeKI	GCWGC	1 cut(s)	562
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	4 cut(s)	37, 124, 329, 374
BauI	CACGAG	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	3 cut(s)	141, 225, 236
BceAI	ACGGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BcoDI	GTCTC	1 cut(s)	497
BfrI	CTTAAG	1 cut(s)	526
BisI	GCNGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	341
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	217, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 293
Bse1I	ACTGG	3 cut(s)	170, 319, 341
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	217, 343
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	176, 293
BseMII	CTCAG	3 cut(s)	106, 492, 521
BseNI	ACTGG	3 cut(s)	170, 319, 341
BseXI	GCAGC	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	176, 293
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	13, 125, 540
Bsp19I	CCATGG	1 cut(s)	217
BspCNI	CTCAG	3 cut(s)	105, 493, 520
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	21, 120, 535
BspTI	CTTAAG	1 cut(s)	526
BsrI	ACTGG	3 cut(s)	170, 319, 341
BssECI	CCNNGG	2 cut(s)	217, 343
BssMI	GATC	3 cut(s)	13, 125, 540
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	217, 343
Bst2BI	CACGAG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	151
BstAFI	CTTAAG	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	92, 501, 507
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	16, 128, 543
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	13, 125, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	7 cut(s)	194, 218, 258, 292, 359, 386, 535
CviJI	RGCY	8 cut(s)	77, 90, 168, 414, 473, 493, 524, 565
CviKI_1	RGCY	8 cut(s)	77, 90, 168, 414, 473, 493, 524, 565
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	3 cut(s)	92, 501, 507
DpnI	GATC	3 cut(s)	15, 127, 542
DpnII	GATC	3 cut(s)	13, 125, 540
Eco130I	CCWWGG	2 cut(s)	217, 343
EcoT14I	CCWWGG	2 cut(s)	217, 343
ErhI	CCWWGG	2 cut(s)	217, 343
FaeI	CATG	7 cut(s)	197, 221, 261, 295, 362, 389, 538
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	7 cut(s)	193, 217, 257, 291, 358, 385, 534
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	563
GluI	GCNGC	1 cut(s)	563
Hin1II	CATG	7 cut(s)	197, 221, 261, 295, 362, 389, 538
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	1 cut(s)	505
HphI	GGTGA	4 cut(s)	37, 124, 329, 374
Hpy166II	GTNNAC	2 cut(s)	70, 101
Hpy188I	TCNGA	2 cut(s)	95, 510
Hpy188III	TCNNGA	2 cut(s)	327, 461
Hpy8I	GTNNAC	2 cut(s)	70, 101
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	3 cut(s)	92, 501, 507
Hsp92II	CATG	7 cut(s)	197, 221, 261, 295, 362, 389, 538
Kzo9I	GATC	3 cut(s)	13, 125, 540
LpnPI	CCDG	5 cut(s)	183, 300, 322, 338, 572
Lsp1109I	GCAGC	1 cut(s)	574
MaeIII	GTNAC	3 cut(s)	260, 436, 478
MalI	GATC	3 cut(s)	15, 127, 542
MboI	GATC	3 cut(s)	13, 125, 540
MboII	GAAGA	1 cut(s)	523
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	5 cut(s)	137, 211, 275, 280, 429
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	2 cut(s)	182, 521
MnlI	CCTC	6 cut(s)	45, 101, 170, 171, 232, 541
MseI	TTAA	2 cut(s)	273, 527
MspCI	CTTAAG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	3 cut(s)	13, 125, 540
NlaIII	CATG	7 cut(s)	197, 221, 261, 295, 362, 389, 538
NlaIV	GGNNCC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	564
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	273, 527
SatI	GCNGC	1 cut(s)	563
Sau3AI	GATC	3 cut(s)	13, 125, 540
SchI	GAGTC	1 cut(s)	499
SetI	ASST	4 cut(s)	370, 495, 567, 594
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	5 cut(s)	137, 211, 275, 280, 429
StyI	CCWWGG	2 cut(s)	217, 343
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	223, 406
TasI	AATT	5 cut(s)	137, 211, 275, 280, 429
Tru1I	TTAA	2 cut(s)	273, 527
Tru9I	TTAA	2 cut(s)	273, 527
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	562
TspRI	CASTG	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.