Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004933

Physical Location & Seq

Genomic Coordinates Forward (+)

5582977 .. 5585120

Gene Structure 2144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTCCATTATAGATTTCTTTTACATTATATTGGTTACATAATGTGTCTGTTGATTCCATTTATTCATCAGTGTAAGCAGCAAAAAAGATGGGCTGATGGGTCACAGAGAGCTTCTAAAGTAGTTGCATACTATGGCTTGAAGGAACCACCTTATAAATTTGATGATTTGGAACCCTATATGAGTAAGAGGACATTGGAGGTTCATTGGGGAGACCATCATCGTAACTACTTGGAAGGTTTGAAAAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTCGTCAAAGCAACATATAATAATGGGAATCCCTTAACTGAATTTAACAACGCTGCTCAGGAATCCATGCAACCTGGAGGATTGGACATGCCCAAACTAGGTGTAATTGAGCAGATTGAAAAGGATTTTGGTTCCAATACAAGTTTCAGAGAGAAGTTTATAGAAGCAGCACTAAATTTGCTTGGCTGGTTTGTAAGCTTGTTAGCTTTTTTAGTAAAGAGAGAAGAGAGACAACTCAAGATAGTTAGAACTTCAAATGCCATTTCCCCACTTGTCTGGGATGACATACTGATAATCTGTTTCGATATGTGGGAGGCGTTATGCTTATTATCTGGATTACAAGGTATGTGTTTACTTGCTTTTCTTGCAGCAAGCTTCACTTTCTGTCCAGAACCTCAAGTATTTTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

235

Amino Acids

27.3

Weight (kDa)

5.9

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	45 - 89	4.2e-10	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	133 - 203	1.4e-09	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08335 AT5G08335 AT5G23320 AT5G23320
malus_domestica	MD11G1238800.v1.1 MD13G1003500.v1.1 MD16G1003900.v1.1
prunus_persica	Prupe.1G348900_v2.0.a1 Prupe.1G348900_v2.0.a1
pyrus_communis	pycom13g00300 pycom16g00210
rosa_chinensis	RchiOBHm_Chr1g0318061 RchiOBHm_Chr1g0318091 RchiOBHm_Chr1g0318101 RchiOBHm_Chr4g0446911
rosa_laevigata	RLG00000005622 RLG00000030561 RLG00000030567
rosa_multiflora	Rmu_sc0001753.1_g000011 Rmu_sc0011424.1_g000010 Rmu_sc0011539.1_g000006
rosa_roxburghii	Rroxscaffold_4G00329550 Rroxscaffold_4G00329600
rosa_rugosa	Rorug04G0375900
rosa_samantha	Rh4AG437100 Rh4BG446300 Rh4CG463600 Rh4DG444900
rosa_wichuraiana	Rw1G002410 Rw4G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	158, 335, 469
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	142, 244, 413, 549
AjnI	CCWGG	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	4 cut(s)	405, 422, 437, 454
AluBI	AGCT	5 cut(s)	113, 253, 492, 500, 669
AluI	AGCT	5 cut(s)	113, 253, 492, 500, 669
Alw26I	GTCTC	2 cut(s)	207, 517
ApeKI	GCWGC	4 cut(s)	79, 347, 461, 662
ApoI	RAATTY	3 cut(s)	158, 335, 469
BbvI	GCAGC	4 cut(s)	91, 334, 473, 674
BccI	CCATC	3 cut(s)	84, 92, 225
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	207, 517
BfaI	CTAG	2 cut(s)	254, 392
BisI	GCNGC	4 cut(s)	80, 348, 462, 663
BlsI	GCNGC	4 cut(s)	81, 349, 463, 664
Bme1390I	CCNGG	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	147, 174, 427
BmrFI	CCNGG	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	515, 675
BsaI	GGTCTC	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	91, 334, 473, 674
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	2 cut(s)	207, 517
Bso31I	GGTCTC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	147, 174, 427
BspTNI	GGTCTC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	254, 513
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	580
BstMAI	GTCTC	2 cut(s)	207, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	367
BstV1I	GCAGC	4 cut(s)	91, 334, 473, 674
BstXI	CCANNNNNNTGG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	667
CviAII	CATG	2 cut(s)	361, 382
CviJI	RGCY	9 cut(s)	95, 113, 138, 253, 279, 480, 492, 500, 669
CviKI_1	RGCY	9 cut(s)	95, 113, 138, 253, 279, 480, 492, 500, 669
DdeI	CTNAG	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	254, 513
EarI	CTCTTC	2 cut(s)	254, 513
Eco31I	GGTCTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	367
FaeI	CATG	2 cut(s)	364, 385
FalI	AAGNNNNNCTT	2 cut(s)	658, 690
FatI	CATG	2 cut(s)	360, 381
Fnu4HI	GCNGC	4 cut(s)	80, 348, 462, 663
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	4 cut(s)	80, 348, 462, 663
FspBI	CTAG	2 cut(s)	254, 392
GluI	GCNGC	4 cut(s)	80, 348, 462, 663
GsuI	CTGGAG	1 cut(s)	390
Hin1II	CATG	2 cut(s)	364, 385
HindIII	AAGCTT	2 cut(s)	490, 667
HinfI	GANTC	3 cut(s)	55, 322, 356
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	4 cut(s)	353, 532, 627, 683
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	2 cut(s)	136, 230
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	128, 364, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	364, 385
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	338, 354, 381, 466, 556, 612, 696
Lsp1109I	GCAGC	4 cut(s)	91, 334, 473, 674
MaeI	CTAG	2 cut(s)	254, 392
MaeIII	GTNAC	4 cut(s)	35, 102, 224, 263
MboII	GAAGA	2 cut(s)	271, 530
MluCI	AATT	4 cut(s)	158, 335, 399, 469
MnlI	CCTC	5 cut(s)	183, 193, 365, 601, 699
MseI	TTAA	2 cut(s)	329, 339
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	659
NlaIII	CATG	2 cut(s)	364, 385
NlaIV	GGNNCC	3 cut(s)	147, 174, 427
NmuCI	GTSAC	2 cut(s)	102, 263
NspI	RCATGY	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	55, 322, 356
PkrI	GCNGC	4 cut(s)	81, 349, 463, 664
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	147, 174, 427
SaqAI	TTAA	2 cut(s)	329, 339
SatI	GCNGC	4 cut(s)	80, 348, 462, 663
ScrFI	CCNGG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	530, 690
SmoI	CTYRAG	2 cut(s)	530, 690
Sse9I	AATT	4 cut(s)	158, 335, 399, 469
SspMI	CTAG	2 cut(s)	254, 392
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	597
TasI	AATT	4 cut(s)	158, 335, 399, 469
TfiI	GAWTC	3 cut(s)	55, 322, 356
Tru1I	TTAA	2 cut(s)	329, 339
Tru9I	TTAA	2 cut(s)	329, 339
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	2 cut(s)	102, 263
TseI	GCWGC	4 cut(s)	79, 347, 461, 662
Tsp45I	GTSAC	2 cut(s)	102, 263
TspDTI	ATGAA	3 cut(s)	56, 194, 306
TspRI	CASTG	1 cut(s)	77
XapI	RAATTY	3 cut(s)	158, 335, 469
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	2 cut(s)	254, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.