RchiOBHm_Chr1g0322091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003540
Physical Location & Seq
Reverse (-)
9559501 .. 9566973
7473 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGTTGTGCTTGATTTTGATGGATGCGATTGGGCTTTATTCCATTGTTTTGGTAATGGGTATATTTCTTCATTTGCTTTTGAGATCAACATCAGAGCCAACCCAGACTCGATTACAGAATTCATCAGTTGAGGTTATAAGTGGCTGCCCTCCAACTCCACTGCGTTTGCCATTATCCCAGTCTCTTGCTCTTATTCAGAAATGGGCAGCGAGGAGCCAAGAGACCCGTTGGAAAGCTGTTGGTAATGACATGCAGAGGAATCCCGGTTATAAACCAGAAATAAAGAAGCGGCTTCCTAAGAAGATTAGGCAGATTCCAGAGTGCTATTTTCTTCCTCGAAGATCCCGACTGTATAACTTAACATTTGTTGGAGCATGTATTGCTGGTGGAATTGGTGCAGGGATGTTGGTGGAGATGTGGATAAACATGAAATTTAGAGAGGATGGAGGCGTATTATGGGAGTTTGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.84

Weight (kDa)

9.73

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 137, 270
AciI CCGC 1 cut(s) 289
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 2 cut(s) 118, 431
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 186, 215
AlwI GGATC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 144, 206
ApoI RAATTY 2 cut(s) 118, 431
AsuC2I CCSGG 1 cut(s) 264
BbvI GCAGC 2 cut(s) 131, 218
BccI CCATC 2 cut(s) 13, 437
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 186, 215
BisI GCNGC 3 cut(s) 145, 207, 290
BlsI GCNGC 3 cut(s) 146, 208, 291
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 88
BseGI GGATG 3 cut(s) 28, 408, 448
BseJI GATNNNNATC 1 cut(s) 88
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 131, 218
BsgI GTGCAG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 186, 215
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 83, 341
BspACI CCGC 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 178
BssMI GATC 2 cut(s) 83, 341
Bst4CI ACNGT 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 28, 408, 448
BstKTI GATC 2 cut(s) 86, 344
BstMAI GTCTC 2 cut(s) 186, 215
BstMBI GATC 2 cut(s) 83, 341
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 253, 378
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 131, 218
BstX2I RGATCY 1 cut(s) 341
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 341
BtsCI GGATG 3 cut(s) 28, 408, 448
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 3 cut(s) 250, 375, 427
CviJI RGCY 6 cut(s) 34, 97, 144, 216, 236, 292
CviKI_1 RGCY 6 cut(s) 34, 97, 144, 216, 236, 292
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 85, 343
DpnII GATC 2 cut(s) 83, 341
Eco31I GGTCTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 118
FaeI CATG 3 cut(s) 253, 378, 430
FaiI YATR 8 cut(s) 62, 137, 251, 270, 354, 376, 428, 457
FatI CATG 3 cut(s) 249, 374, 426
Fnu4HI GCNGC 3 cut(s) 145, 207, 290
FokI GGATG 3 cut(s) 35, 415, 455
Fsp4HI GCNGC 3 cut(s) 145, 207, 290
GluI GCNGC 3 cut(s) 145, 207, 290
HapII CCGG 1 cut(s) 264
Hin1II CATG 3 cut(s) 253, 378, 430
HinfI GANTC 3 cut(s) 106, 259, 313
HpaII CCGG 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 94, 198
Hpy188III TCNNGA 2 cut(s) 317, 345
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 253, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 253, 378, 430
Kzo9I GATC 2 cut(s) 83, 341
LmnI GCTCC 2 cut(s) 213, 371
LpnPI CCDG 7 cut(s) 116, 191, 277, 288, 330, 369, 384
Lsp1109I GCAGC 2 cut(s) 131, 218
LweI GCATC 1 cut(s) 13
MalI GATC 2 cut(s) 85, 343
MboI GATC 2 cut(s) 83, 341
MboII GAAGA 4 cut(s) 59, 313, 323, 351
MflI RGATCY 1 cut(s) 341
MluCI AATT 3 cut(s) 118, 390, 431
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 3 cut(s) 176, 209, 349
MnlI CCTC 7 cut(s) 124, 159, 204, 249, 345, 433, 440
MseI TTAA 1 cut(s) 359
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 264
NdeII GATC 2 cut(s) 83, 341
NlaIII CATG 3 cut(s) 253, 378, 430
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 2 cut(s) 253, 378
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PfeI GAWTC 2 cut(s) 259, 313
PkrI GCNGC 3 cut(s) 146, 208, 291
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PsiI TTATAA 2 cut(s) 137, 270
PspN4I GGNNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 341
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 3 cut(s) 145, 207, 290
Sau3AI GATC 2 cut(s) 83, 341
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 264
SetI ASST 2 cut(s) 135, 238
SfaNI GCATC 1 cut(s) 13
Sse9I AATT 3 cut(s) 118, 390, 431
SsiI CCGC 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 109, 337
TasI AATT 3 cut(s) 118, 390, 431
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 2 cut(s) 259, 313
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 165
TseI GCWGC 2 cut(s) 144, 206
TspDTI ATGAA 3 cut(s) 59, 111, 443
TspRI CASTG 1 cut(s) 165
XapI RAATTY 2 cut(s) 118, 431
XceI RCATGY 2 cut(s) 253, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.