RchiOBHm_Chr1g0324301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009711
Physical Location & Seq
Forward (+)
11988413 .. 11993985
5573 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1308 bp
ATGAGCAGCTGGGTTGGAGCTTCTTCTTCTTCTTCTCCCTGGCCTCTCAGGACCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTATCCTTCTAAATTCTTCAAATTCCATTCATGTCCTCCTCCTCCTTCTCCGCCTCCTCCGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTGGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTCGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCGGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAACGCAAGGCATCTCTTAGAAACACGAGCTCTATATCTCCATTCGGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGCAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGTTGATGAAGACAGTGGCTTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACCAGTGTTAATTTTGGGGATATGAGGCGTGCGTTATCTGCTTGCGAACGTCTTATTCTCCTCGAAGCTGATTCAAAGGAATTGAGAGATTATAGCATTCTTCTCTACCATTGTGGGTTTTATGAGCAATCACTTGAATTTTTAAAGTTGTATCAGGACACAAAGACTCGCCCACAACTTAGACGATCATCTAATTCATCAACCAATCTAGAGGAAGATGCTGTAGAGAAGTTGATGATACGCCTTAAACTAATTTTGATGGAGGATGGTTGGAGCAGGCCTTCATATGTAAGAAACTTTCTTGGTAACAGCTCTGATCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

435

Amino Acids

49.21

Weight (kDa)

7.0

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 146 - 222 5.1e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 330
AciI CCGC 4 cut(s) 134, 325, 328, 401
AclWI GGATC 3 cut(s) 622, 707, 1292
AcsI RAATTY 6 cut(s) 95, 104, 194, 648, 859, 1118
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 555
AflII CTTAAG 1 cut(s) 868
AgsI TTSAA 6 cut(s) 103, 193, 478, 820, 1056, 1118
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 6 cut(s) 9, 20, 578, 934, 1049, 1293
AluI AGCT 6 cut(s) 9, 20, 578, 934, 1049, 1293
Alw21I GWGCWC 2 cut(s) 204, 580
AlwI GGATC 3 cut(s) 622, 707, 1292
AoxI GGCC 3 cut(s) 41, 833, 1259
ApeKI GCWGC 6 cut(s) 6, 183, 362, 875, 884, 950
ApoI RAATTY 6 cut(s) 95, 104, 194, 648, 859, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp700I GAANNNNTTC 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 51, 981
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 2 cut(s) 51, 981
BanII GRGCYC 1 cut(s) 580
BauI CACGAG 2 cut(s) 380, 573
BbsI GAAGAC 2 cut(s) 716, 924
Bbv12I GWGCWC 2 cut(s) 204, 580
BbvI GCAGC 6 cut(s) 18, 195, 374, 862, 871, 937
BccI CCATC 2 cut(s) 1234, 1241
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 763, 847
BfaI CTAG 3 cut(s) 255, 965, 1190
BfmI CTRYAG 1 cut(s) 1203
BfrI CTTAAG 1 cut(s) 868
BisI GCNGC 7 cut(s) 7, 184, 328, 363, 876, 885, 951
BlsI GCNGC 7 cut(s) 8, 185, 329, 364, 877, 886, 952
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 51, 981
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 51, 981
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 9 cut(s) 241, 327, 403, 568, 814, 889, 911, 947, 1189
BpiI GAAGAC 2 cut(s) 716, 924
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu10I CCTNAGC 1 cut(s) 945
BsaJI CCNNGG 2 cut(s) 38, 1301
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse1I ACTGG 2 cut(s) 407, 984
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 38, 1301
BseGI GGATG 4 cut(s) 376, 418, 829, 1252
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 2 cut(s) 61, 657
BseNI ACTGG 2 cut(s) 407, 984
BseRI GAGGAG 5 cut(s) 70, 111, 114, 129, 1031
BseXI GCAGC 6 cut(s) 18, 195, 374, 862, 871, 937
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 3 cut(s) 43, 835, 1261
BsiHKAI GWGCWC 2 cut(s) 204, 580
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 1 cut(s) 555
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 2 cut(s) 388, 1077
BsnI GGCC 3 cut(s) 43, 835, 1261
Bsp1286I GDGCHC 2 cut(s) 204, 580
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
Bsp19I CCATGG 1 cut(s) 1301
BspACI CCGC 4 cut(s) 134, 325, 328, 401
BspANI GGCC 3 cut(s) 43, 835, 1261
BspCNI CTCAG 2 cut(s) 60, 656
BspFNI CGCG 1 cut(s) 330
BspPI GGATC 3 cut(s) 622, 707, 1292
BspTI CTTAAG 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 630
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 2 cut(s) 407, 984
BssECI CCNNGG 2 cut(s) 38, 1301
BssMI GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
BssSI CACGAG 2 cut(s) 380, 573
BssT1I CCWWGG 1 cut(s) 1301
Bst2BI CACGAG 2 cut(s) 380, 573
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 923
Bst6I CTCTTC 5 cut(s) 61, 67, 73, 79, 475
BstAFI CTTAAG 1 cut(s) 868
BstAPI GCANNNNNTGC 1 cut(s) 884
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 5 cut(s) 272, 936, 1011, 1024, 1259
BstDEI CTNAG 6 cut(s) 47, 565, 643, 809, 945, 1160
BstDSI CCRYGG 1 cut(s) 1301
BstF5I GGATG 4 cut(s) 376, 418, 829, 1252
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 8 cut(s) 439, 617, 715, 766, 850, 970, 1169, 1300
BstMBI GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
BstMWI GCNNNNNNNGC 7 cut(s) 251, 324, 841, 881, 884, 950, 1019
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 1203
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 6 cut(s) 18, 195, 374, 862, 871, 937
BstV2I GAAGAC 2 cut(s) 716, 924
BsuRI GGCC 3 cut(s) 43, 835, 1261
BtgI CCRYGG 1 cut(s) 1301
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 376, 418, 829, 1252
BtsIMutI CAGTG 3 cut(s) 414, 928, 991
Cac8I GCNNGC 5 cut(s) 272, 936, 1011, 1024, 1259
Cfr13I GGNCC 2 cut(s) 51, 981
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 523
CviAII CATG 4 cut(s) 114, 767, 845, 1302
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 6 cut(s) 47, 565, 643, 809, 945, 1160
DpnI GATC 8 cut(s) 438, 616, 714, 765, 849, 969, 1168, 1299
DpnII GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
DraI TTTAAA 1 cut(s) 1125
Eam1104I CTCTTC 5 cut(s) 61, 67, 73, 79, 475
EarI CTCTTC 5 cut(s) 61, 67, 73, 79, 475
EciI GGCGGA 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 1301
Eco147I AGGCCT 1 cut(s) 1261
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 51, 981
Eco53kI GAGCTC 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 578
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 1301
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 1301
FaeI CATG 4 cut(s) 117, 770, 848, 1305
FaqI GGGAC 1 cut(s) 687
FatI CATG 4 cut(s) 113, 766, 844, 1301
FauNDI CATATG 1 cut(s) 1267
FbaI TGATCA 2 cut(s) 763, 847
Fnu4HI GCNGC 7 cut(s) 7, 184, 328, 363, 876, 885, 951
FokI GGATG 4 cut(s) 383, 425, 836, 1259
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 7 cut(s) 7, 184, 328, 363, 876, 885, 951
FspBI CTAG 3 cut(s) 255, 965, 1190
GluI GCNGC 7 cut(s) 7, 184, 328, 363, 876, 885, 951
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 3 cut(s) 43, 835, 1261
HapII CCGG 1 cut(s) 488
HgaI GACGC 1 cut(s) 218
Hin1II CATG 4 cut(s) 117, 770, 848, 1305
HinfI GANTC 9 cut(s) 218, 228, 264, 374, 537, 758, 805, 1052, 1147
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 6 cut(s) 292, 542, 646, 654, 763, 1297
Hpy188III TCNNGA 7 cut(s) 49, 215, 225, 612, 710, 1136, 1190
Hpy99I CGWCG 3 cut(s) 182, 212, 487
HpyAV CCTTC 4 cut(s) 99, 138, 814, 1272
HpyCH4III ACNGT 1 cut(s) 923
HpyCH4IV ACGT 2 cut(s) 177, 1030
HpyCH4V TGCA 6 cut(s) 362, 623, 770, 878, 902, 938
HpyF10VI GCNNNNNNNGC 7 cut(s) 251, 324, 841, 881, 884, 950, 1019
HpyF3I CTNAG 6 cut(s) 47, 565, 643, 809, 945, 1160
HpySE526I ACGT 2 cut(s) 177, 1030
Hsp92II CATG 4 cut(s) 117, 770, 848, 1305
Ksp22I TGATCA 2 cut(s) 763, 847
Kzo9I GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
LmnI GCTCC 3 cut(s) 17, 207, 1254
Lsp1109I GCAGC 6 cut(s) 18, 195, 374, 862, 871, 937
LweI GCATC 9 cut(s) 241, 327, 403, 568, 814, 889, 911, 947, 1189
MaeI CTAG 3 cut(s) 255, 965, 1190
MaeII ACGT 2 cut(s) 177, 1030
MaeIII GTNAC 1 cut(s) 1286
MalI GATC 8 cut(s) 438, 616, 714, 765, 849, 969, 1168, 1299
MboI GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
MhlI GDGCHC 2 cut(s) 204, 580
MlyI GAGTC 2 cut(s) 368, 1141
MmeI TCCRAC 3 cut(s) 195, 480, 1232
Mph1103I ATGCAT 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 4 cut(s) 869, 990, 1124, 1227
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 868
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 2 cut(s) 388, 1077
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 7 cut(s) 251, 324, 841, 881, 884, 950, 1019
NcoI CCATGG 1 cut(s) 1301
NdeI CATATG 1 cut(s) 1267
NdeII GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
NlaIII CATG 4 cut(s) 117, 770, 848, 1305
NsiI ATGCAT 1 cut(s) 904
PceI AGGCCT 1 cut(s) 1261
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 204
PctI GAATGC 2 cut(s) 388, 1077
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 7 cut(s) 218, 228, 264, 537, 758, 805, 1052
PkrI GCNGC 7 cut(s) 8, 185, 329, 364, 877, 886, 952
PleI GAGTC 2 cut(s) 368, 1141
PpsI GAGTC 2 cut(s) 368, 1141
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 1 cut(s) 38
PspPI GGNCC 2 cut(s) 51, 981
PspPPI RGGWCCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 4 cut(s) 869, 990, 1124, 1227
SatI GCNGC 7 cut(s) 7, 184, 328, 363, 876, 885, 951
Sau3AI GATC 8 cut(s) 436, 614, 712, 763, 847, 967, 1166, 1297
Sau96I GGNCC 2 cut(s) 51, 981
SchI GAGTC 2 cut(s) 368, 1141
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 204, 580
SfaNI GCATC 9 cut(s) 241, 327, 403, 568, 814, 889, 911, 947, 1189
SfcI CTRYAG 1 cut(s) 1203
SinI GGWCC 2 cut(s) 51, 981
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
SseBI AGGCCT 1 cut(s) 1261
SsiI CCGC 4 cut(s) 134, 325, 328, 401
SspMI CTAG 3 cut(s) 255, 965, 1190
SstI GAGCTC 1 cut(s) 580
StuI AGGCCT 1 cut(s) 1261
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 1301
TaaI ACNGT 1 cut(s) 923
TaiI ACGT 2 cut(s) 180, 1033
TaqI TCGA 1 cut(s) 1044
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 7 cut(s) 218, 228, 264, 537, 758, 805, 1052
Tru1I TTAA 4 cut(s) 869, 990, 1124, 1227
Tru9I TTAA 4 cut(s) 869, 990, 1124, 1227
TscAI CASTG 3 cut(s) 414, 928, 991
TseI GCWGC 6 cut(s) 6, 183, 362, 875, 884, 950
TspDTI ATGAA 6 cut(s) 102, 462, 883, 930, 1167, 1254
TspGWI ACGGA 2 cut(s) 132, 385
TspRI CASTG 3 cut(s) 414, 928, 991
Vha464I CTTAAG 1 cut(s) 868
VpaK11BI GGWCC 2 cut(s) 51, 981
XapI RAATTY 6 cut(s) 95, 104, 194, 648, 859, 1118
XbaI TCTAGA 1 cut(s) 1189
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 3 cut(s) 255, 965, 1190
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.