RchiOBHm_Chr1g0324921

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009941
Physical Location & Seq
Reverse (-)
12685071 .. 12685725
655 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGGAGCCGTTCGTCATCTCCGCCGAGCTCCTCAACCACCTGGTGTTCATTGAGCTCCTCAATAAGTCAGCGCAGGAGTATAGCTACGAGCAGCGCGGCGTGCTCCGGATTCTCTGCGTGGCGGTGGTGTTCGAGCGCGTCCTCGAGACGCTCAGGCTGGGGTGGGTTTCATCTTTCTCTCTCCGCATGTTATCTTTGGAGTCCAAAATGGGAAGACCTCATAATTTTTCGATAAGTGGTTATCCAAAATGGAAGACGACAGGCGGGTTCCATCTTTCTCTCTCTCTCTACCTGTTATCTCTGAAAGCTCATAATTTTTTAATGGGGAAAGAGCTATGCGAGTCTTGA

Protein Analysis

115

Amino Acids

13.18

Weight (kDa)

8.64

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 2 - 51 8.8e-13 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 96, 138
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 5 cut(s) 21, 96, 122, 184, 264
AdeI CACNNNGTG 1 cut(s) 43
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 5 cut(s) 28, 55, 84, 308, 334
AluI AGCT 5 cut(s) 28, 55, 84, 308, 334
Alw21I GWGCWC 3 cut(s) 30, 57, 105
Alw26I GTCTC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 91
AspLEI GCGC 3 cut(s) 73, 96, 138
AvaI CYCGRG 1 cut(s) 143
BanII GRGCYC 2 cut(s) 30, 57
BbsI GAAGAC 2 cut(s) 220, 260
Bbv12I GWGCWC 3 cut(s) 30, 57, 105
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 2 cut(s) 92, 97
BlsI GCNGC 2 cut(s) 93, 98
Bme1390I CCNGG 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 6, 269
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 220, 260
Bpu10I CCTNAGC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 20, 47
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 157
Bsh1236I CGCG 2 cut(s) 96, 138
BsiHKAI GWGCWC 3 cut(s) 30, 57, 105
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 30, 57, 105
Bsp13I TCCGGA 1 cut(s) 105
BspACI CCGC 5 cut(s) 21, 96, 122, 184, 264
BspCNI CTCAG 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 2 cut(s) 96, 138
BspLI GGNNCC 2 cut(s) 6, 269
Bst2UI CCWGG 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 152
BstFNI CGCG 2 cut(s) 96, 138
BstHHI GCGC 3 cut(s) 73, 96, 138
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 39
BstUI CGCG 2 cut(s) 96, 138
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 2 cut(s) 220, 260
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 3 cut(s) 73, 96, 138
CseI GACGC 2 cut(s) 127, 157
CsiI ACCWGGT 1 cut(s) 39
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 7, 28, 55, 84, 157, 308, 334
CviKI_1 RGCY 7 cut(s) 7, 28, 55, 84, 157, 308, 334
DdeI CTNAG 1 cut(s) 152
DraIII CACNNNGTG 1 cut(s) 43
EciI GGCGGA 1 cut(s) 10
Ecl136II GAGCTC 2 cut(s) 28, 55
Eco24I GRGCYC 2 cut(s) 30, 57
Eco53kI GAGCTC 2 cut(s) 28, 55
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 2 cut(s) 28, 55
EcoRII CCWGG 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 30, 57
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 1 cut(s) 190
FaiI YATR 5 cut(s) 81, 188, 222, 312, 337
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 92, 97
FriOI GRGCYC 2 cut(s) 30, 57
Fsp4HI GCNGC 2 cut(s) 92, 97
GlaI GCGC 3 cut(s) 72, 95, 137
GluI GCNGC 2 cut(s) 92, 97
GsaI CCCAGC 1 cut(s) 161
HapII CCGG 1 cut(s) 106
HgaI GACGC 2 cut(s) 127, 157
HhaI GCGC 3 cut(s) 73, 96, 138
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 3 cut(s) 71, 94, 136
HinP1I GCGC 3 cut(s) 71, 94, 136
HinfI GANTC 3 cut(s) 109, 200, 341
HpaII CCGG 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 106, 145, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 3 cut(s) 71, 94, 136
Kpn2I TCCGGA 1 cut(s) 105
LmnI GCTCC 4 cut(s) 4, 33, 60, 108
LpnPI CCDG 8 cut(s) 26, 53, 59, 119, 139, 143, 246, 305
Lsp1109I GCAGC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 39
MboII GAAGA 2 cut(s) 225, 265
MhlI GDGCHC 3 cut(s) 30, 57, 105
MluCI AATT 2 cut(s) 223, 313
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 4 cut(s) 41, 68, 152, 228
MroI TCCGGA 1 cut(s) 105
MseI TTAA 1 cut(s) 320
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 2 cut(s) 96, 138
MwoI GCNNNNNNNGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 6, 269
NmeAIII GCCGAG 1 cut(s) 49
NspI RCATGY 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 143
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 93, 98
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 2 cut(s) 30, 57
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 6, 269
SacI GAGCTC 2 cut(s) 30, 57
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 2 cut(s) 92, 97
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 3 cut(s) 30, 57, 105
SetI ASST 8 cut(s) 30, 42, 57, 86, 220, 294, 310, 336
SexAI ACCWGGT 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 223, 313
SsiI CCGC 5 cut(s) 21, 96, 122, 184, 264
SstI GAGCTC 2 cut(s) 30, 57
StyD4I CCNGG 1 cut(s) 39
TaqI TCGA 3 cut(s) 132, 144, 230
TasI AATT 2 cut(s) 223, 313
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 37, 159
XceI RCATGY 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.