RchiOBHm_Chr1g0332551

sodium metabolite cotransporter BASS4

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
23918781 .. 23919999
1219 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGTGTTTTTGTTATGGACAAAATGTTTGTGGATTACTATGTGCAGCTCTTGTTGGTGGAGTGACGTTAGGGTTTGCGTATCCAAGCCTAGGTTGTCTTGCTGATTCATACTCTTTGTCAAAATTTTCCACGTTCGGGATTTTTATCATCTCTGGGTTAACCTTGCACACTGGCAAAATTATTGCAGCTGCAGACGCATGGCCTGTTGGAATCTTCGGACTAGTTATCAGAATTGTTGTGAGGTTTAAAGGTTTTTGTTGA

Protein Analysis

86

Amino Acids

9.03

Weight (kDa)

8.63

Isoelectric Point (pI)

7.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 89, 135
AhlI ACTAGT 1 cut(s) 220
AluBI AGCT 2 cut(s) 47, 188
AluI AGCT 2 cut(s) 47, 188
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 44, 185, 188
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AspA2I CCTAGG 1 cut(s) 88
AvrII CCTAGG 1 cut(s) 88
BbvI GCAGC 3 cut(s) 56, 175, 197
BciVI GTATCC 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 89, 221
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 90
BisI GCNGC 3 cut(s) 45, 186, 189
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 3 cut(s) 46, 187, 190
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 135
Bse1I ACTGG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 89, 135
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 56, 175, 197
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 89, 135
BsnI GGCC 1 cut(s) 202
BspANI GGCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 193
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 56, 175, 197
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 168
CseI GACGC 1 cut(s) 203
CviAII CATG 1 cut(s) 198
CviJI RGCY 4 cut(s) 47, 87, 188, 202
CviKI_1 RGCY 4 cut(s) 47, 87, 188, 202
DraI TTTAAA 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 201
FaiI YATR 4 cut(s) 15, 40, 109, 199
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 3 cut(s) 45, 186, 189
Fsp4HI GCNGC 3 cut(s) 45, 186, 189
FspBI CTAG 2 cut(s) 89, 221
GluI GCNGC 3 cut(s) 45, 186, 189
HaeIII GGCC 1 cut(s) 202
HgaI GACGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 201
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 2 cut(s) 104, 210
HpaI GTTAAC 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 218, 230
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 159
HpyCH4IV ACGT 2 cut(s) 65, 131
HpyCH4V TGCA 4 cut(s) 44, 166, 185, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 2 cut(s) 65, 131
Hsp92II CATG 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 138, 156, 216
Lsp1109I GCAGC 3 cut(s) 56, 175, 197
MaeI CTAG 2 cut(s) 89, 221
MaeII ACGT 2 cut(s) 65, 131
MaeIII GTNAC 1 cut(s) 61
MboII GAAGA 1 cut(s) 205
MluCI AATT 3 cut(s) 122, 177, 231
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 1 cut(s) 234
MseI TTAA 2 cut(s) 158, 246
MspA1I CMGCKG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 194
NlaIII CATG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 104, 210
PkrI GCNGC 3 cut(s) 46, 187, 190
PstI CTGCAG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 158, 246
SatI GCNGC 3 cut(s) 45, 186, 189
SetI ASST 8 cut(s) 49, 68, 94, 134, 164, 190, 245, 253
SfcI CTRYAG 1 cut(s) 189
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 3 cut(s) 122, 177, 231
SspMI CTAG 2 cut(s) 89, 221
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 2 cut(s) 68, 134
TasI AATT 3 cut(s) 122, 177, 231
TfiI GAWTC 2 cut(s) 104, 210
Tru1I TTAA 2 cut(s) 158, 246
Tru9I TTAA 2 cut(s) 158, 246
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 44, 185, 188
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 175
XapI RAATTY 1 cut(s) 122
XmaJI CCTAGG 1 cut(s) 88
XspI CTAG 2 cut(s) 89, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.