Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003201

Physical Location & Seq

Genomic Coordinates Reverse (-)

41386373 .. 41387344

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATGCTTCCACATGTTCTTCTGGCAAAGATGCTTTTGGGTTATAACGCGTGGAAGTATACAGATGTGGAGGCAATGAAAGAAAAGTTTGCAAAGCTGCTATTGGGTGAAGATATTACAGGAGGGTACAAGGGCCTCAGCACTGCTTTAGCATTGTCAAATGCCATCACAAATTTAGCAACAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGCAAAGAGAAATGGACTGGTTACTCTCTCCTACCAACTATATGGTTGAGCTAGTTCCTTCCAGGCAAAATGGTGCTAATGGCCGGACAGTAGAGATTATGATTCCGAAAGCTCGTGCAGATATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACAAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCTCAGGTACCAGCTACTGGACTCTCTGATACAGCAAAGAATAAGTTACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

192

Amino Acids

21.49

Weight (kDa)

8.71

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	22 - 191	2.4e-83	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31650 AT1G31650
fragaria_vesca	FvH4_5g24650 FvH4_5g24650 FvH4_5g24650
malus_domestica	MD06G1012300.v1.1
prunus_persica	Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1 Prupe.5G015000_v2.0.a1
pyrus_communis	pycom06g01030
rosa_chinensis	RchiOBHm_Chr1g0348481 RchiOBHm_Chr3g0483451 RchiOBHm_Chr5g0060521 RchiOBHm_Chr7g0215031
rosa_laevigata	RLG00000002698 RLG00000022617
rosa_multiflora	Rmu_ssc0000134.1_g000066
rosa_roxburghii	Rroxscaffold_3G00244650
rosa_rugosa	Rorug03G0254500 Rorug07G0149700 Rorug07G0149700
rosa_samantha	Rh1AG253100 Rh3AG184200 Rh3AG254500 Rh4AG241100 Rh4CG255300 Rh5AG463000 Rh5BG374200 Rh5CG248600 Rh7AG170100 Rh7AG286600 Rh7BG278100 Rh7CG306000 Rh7DG290100
rosa_wichuraiana	Rw6G016450 Rw7G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	128, 531
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflII	CTTAAG	1 cut(s)	386
AflIII	ACRYGT	2 cut(s)	13, 48
AgsI	TTSAA	2 cut(s)	413, 426
AjnI	CCWGG	2 cut(s)	302, 490
AluBI	AGCT	5 cut(s)	97, 199, 292, 353, 536
AluI	AGCT	5 cut(s)	97, 199, 292, 353, 536
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	2 cut(s)	133, 322
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	119, 513
AxyI	CCTNAGG	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	3 cut(s)	173, 501, 526
BciT130I	CCWGG	2 cut(s)	304, 492
BciVI	GTATCC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	304, 492
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	3 cut(s)	213, 515, 531
BmrFI	CCNGG	2 cut(s)	304, 492
BmsI	GCATC	2 cut(s)	21, 393
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	3 cut(s)	213, 263, 544
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	304, 492
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	151, 429, 539
BseNI	ACTGG	3 cut(s)	213, 263, 544
BseXI	GCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	135, 324
BshNI	GGYRCC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	539
BsnI	GGCC	2 cut(s)	135, 324
BspANI	GGCC	2 cut(s)	135, 324
BspCNI	CTCAG	3 cut(s)	150, 430, 538
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	213, 515, 531
BspT107I	GGYRCC	1 cut(s)	529
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	213, 263, 544
BssNAI	GTATAC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	304, 492
Bst4CI	ACNGT	2 cut(s)	187, 331
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	386
BstDEI	CTNAG	3 cut(s)	137, 438, 525
BstFNI	CGCG	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	304, 492
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	302, 490
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstZ17I	GTATAC	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	135, 324
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	127, 530
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	8 cut(s)	97, 135, 199, 292, 324, 353, 514, 536
CviKI_1	RGCY	8 cut(s)	97, 135, 199, 292, 324, 353, 514, 536
CviQI	GTAC	2 cut(s)	127, 530
DdeI	CTNAG	3 cut(s)	137, 438, 525
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	302, 490
FaeI	CATG	1 cut(s)	17
FaiI	YATR	8 cut(s)	15, 45, 60, 282, 284, 341, 365, 450
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	135, 324
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	4 cut(s)	343, 398, 422, 543
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	2 cut(s)	119, 513
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	4 cut(s)	223, 348, 498, 550
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	309, 449, 467
HpyCH4III	ACNGT	2 cut(s)	187, 331
HpyCH4V	TGCA	2 cut(s)	92, 359
HpyF3I	CTNAG	3 cut(s)	137, 438, 525
Hsp92II	CATG	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	533
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	2 cut(s)	21, 393
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	261, 567
MboII	GAAGA	4 cut(s)	11, 122, 236, 368
MluCI	AATT	1 cut(s)	172
MluI	ACGCGT	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	392, 537
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	64, 116, 146, 222, 534
MseI	TTAA	2 cut(s)	387, 573
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	304, 492
MvaI	CCWGG	2 cut(s)	304, 492
MvnI	CGCG	1 cut(s)	50
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	213, 515, 531
NspI	RCATGY	1 cut(s)	17
PciI	ACATGT	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	343, 422
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	2 cut(s)	392, 537
PpsI	GAGTC	2 cut(s)	392, 537
PscI	ACATGT	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	302, 490
PspGI	CCWGG	2 cut(s)	302, 490
PspN4I	GGNNCC	3 cut(s)	213, 515, 531
PspPI	GGNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	539
RsaI	GTAC	2 cut(s)	128, 531
RsaNI	GTAC	2 cut(s)	127, 530
SaqAI	TTAA	2 cut(s)	387, 573
SatI	GCNGC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	2 cut(s)	392, 537
ScrFI	CCNGG	2 cut(s)	304, 492
SetI	ASST	9 cut(s)	99, 201, 294, 355, 460, 496, 526, 531, 538
SfaNI	GCATC	2 cut(s)	21, 393
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	302, 490
TaaI	ACNGT	2 cut(s)	187, 331
TaqI	TCGA	1 cut(s)	401
TasI	AATT	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	343, 422
Tru1I	TTAA	2 cut(s)	387, 573
Tru9I	TTAA	2 cut(s)	387, 573
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	539
Vha464I	CTTAAG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.