Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

41965877 .. 41967444

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGAAGCACAAGTGTAAGCTTTGCATGAGGAGCTTCTCTAATGGCAGAGCTTTAGGGGGTCATATGAGGTCTCACATGATGAACCTTCCGATTCATCAGAATCCAGAAGGGGGGGAGGAGGAGGAGGAGGAAGAAGCGCCACATGATCAAATGCTCATTGATGAAATAGACTCGGTTTCAGCTTCTTCTTCTGATGATGATGATGATGAAGAAGAAGAACAAGGAGAAGGGGAGGAGGAGGAAGAAGAAGATGAAGAAGGTTTGTATTACGGGCTTAGAGAAAATCCAAAGAGGAGCATTCGATTAGTAGATCATGAGTTTTCTTTTGCTGTGGATGCTGGCTCTGTTGTTCTTCAGGACAGAGAGAGTGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGGTCCAAGCGGACTCGGAAATCGGCCATGTTTGATCATCATCATCATCATGACGATCATCAGCAACATCAACATCAACTTCATAATCAATACCACCAGCATGATCCAAAGCTTAATCAACATCACCTAGAAGCCTTCAAGAAAATTAAGCTGAAAAACAAGATAGATTCTTGTGCTAATAATGTAGAGCCAGAACCGGTGAGTTCAATTTCTGATGCCACAACAGAGGAAGATGTAGCCTTTTGTCTCATGATGTTATCGAGAGACAAATGGAAAAAACAAGATAAACAACAAGATGATCAAGACGAGGATGCTGAAGTTGAATTATATAGATCCTTGGACGACAGTGATGAATCCGAGGAACAACTGATCAAGTTTCAAAGAACAAAAAGTAGTCGGGGAAAGTACAAGTGCGAAACTTGCAAGAAAGTCTTCAAATCCTATCAAGCTCTTGGCGGGCACAGAGCGAGTCACAAGAAGATTAAAGCCGCCGCCGCTGCTGCTGCTAATCCAAATCCGAATCGCATTGTTTACGAGCCCGAACCCGACCCAAAAATTAACCACAATGCAGGCAGTTCTTCTTTCGCAAAAACCCATCAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACAGGTTCCGCAGCCATTAATAACACTCATCATTATACTCCTCCTGTAAAAAGCTTGGCAAAGATAGGGGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGATTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

416

Amino Acids

47.29

Weight (kDa)

5.46

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	4 - 27	2.3e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	271 - 295	2.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	334 - 356	9.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	382
AciI	CCGC	7 cut(s)	415, 861, 894, 897, 900, 1080, 1211
AclWI	GGATC	2 cut(s)	503, 732
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	1226
AcuI	CTGAAG	2 cut(s)	341, 741
AfaI	GTAC	1 cut(s)	812
AfeI	AGCGCT	1 cut(s)	1044
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	1066
AgeI	ACCGGT	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	544, 612, 728, 785, 841
AluBI	AGCT	8 cut(s)	22, 36, 53, 185, 517, 556, 854, 1125
AluI	AGCT	8 cut(s)	22, 36, 53, 185, 517, 556, 854, 1125
Alw26I	GTCTC	5 cut(s)	78, 368, 397, 656, 663
AlwI	GGATC	2 cut(s)	503, 732
Aor51HI	AGCGCT	1 cut(s)	1044
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	4 cut(s)	902, 905, 908, 1082
ApoI	RAATTY	1 cut(s)	1226
AseI	ATTAAT	1 cut(s)	1089
AsiGI	ACCGGT	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	836
AspLEI	GCGC	2 cut(s)	142, 1045
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	521, 616
AvaII	GGWCC	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	945
BbsI	GAAGAC	2 cut(s)	829, 1018
BbvI	GCAGC	4 cut(s)	889, 892, 895, 1094
BccI	CCATC	1 cut(s)	1008
BcgI	CGANNNNNNTGC	2 cut(s)	1190, 1224
BclI	TGATCA	4 cut(s)	148, 439, 703, 774
BcoDI	GTCTC	5 cut(s)	78, 368, 397, 656, 663
BfaI	CTAG	1 cut(s)	533
BfoI	RGCGCY	2 cut(s)	143, 1046
BglII	AGATCT	1 cut(s)	1153
BisI	GCNGC	7 cut(s)	894, 897, 900, 903, 906, 909, 1083
BlsI	GCNGC	7 cut(s)	895, 898, 901, 904, 907, 910, 1084
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	1078
BmsI	GCATC	4 cut(s)	328, 610, 706, 1210
BpiI	GAAGAC	2 cut(s)	829, 1018
BsaBI	GATNNNNATC	2 cut(s)	444, 1158
BsaI	GGTCTC	2 cut(s)	78, 368
BsaJI	CCNNGG	2 cut(s)	741, 762
BsaWI	WCCGGW	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	601
Bse8I	GATNNNNATC	2 cut(s)	444, 1158
BseDI	CCNNGG	2 cut(s)	741, 762
BseGI	GGATG	2 cut(s)	343, 721
BseJI	GATNNNNATC	2 cut(s)	444, 1158
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	9 cut(s)	46, 134, 137, 140, 143, 251, 254, 310, 1101
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	4 cut(s)	889, 892, 895, 1094
BshFI	GGCC	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	1154
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	5 cut(s)	78, 368, 397, 656, 663
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	1154
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	2 cut(s)	78, 368
Bsp1286I	GDGCHC	2 cut(s)	867, 945
BspACI	CCGC	7 cut(s)	415, 861, 894, 897, 900, 1080, 1211
BspANI	GGCC	1 cut(s)	431
BspHI	TCATGA	3 cut(s)	316, 454, 654
BspLI	GGNNCC	1 cut(s)	1078
BspPI	GGATC	2 cut(s)	503, 732
BspTNI	GGTCTC	2 cut(s)	78, 368
BsrFI	RCCGGY	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	741, 762
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	408, 752
BstC8I	GCNNGC	4 cut(s)	343, 863, 976, 1041
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	343, 721
BstH2I	RGCGCY	2 cut(s)	143, 1046
BstHHI	GCGC	2 cut(s)	142, 1045
BstMAI	GTCTC	5 cut(s)	78, 368, 397, 656, 663
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 338, 825, 899, 902, 905, 908
BstNSI	RCATGY	1 cut(s)	1070
BstSLI	GKGCMC	1 cut(s)	867
BstV1I	GCAGC	4 cut(s)	889, 892, 895, 1094
BstV2I	GAAGAC	2 cut(s)	829, 1018
BstX2I	RGATCY	2 cut(s)	737, 1153
BstYI	RGATCY	2 cut(s)	737, 1153
BsuRI	GGCC	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	343, 721
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	343, 863, 976, 1041
CciI	TCATGA	3 cut(s)	316, 454, 654
CfoI	GCGC	2 cut(s)	142, 1045
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	811
CspAI	ACCGGT	1 cut(s)	601
CviAII	CATG	9 cut(s)	28, 79, 146, 317, 433, 455, 506, 655, 1067
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	1 cut(s)	278
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	945
Eco31I	GGTCTC	2 cut(s)	78, 368
Eco47I	GGWCC	1 cut(s)	408
Eco47III	AGCGCT	1 cut(s)	1044
Eco57I	CTGAAG	2 cut(s)	341, 741
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	9 cut(s)	31, 82, 149, 320, 436, 458, 509, 658, 1070
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	1154
FatI	CATG	9 cut(s)	27, 78, 145, 316, 432, 454, 505, 654, 1066
FauI	CCCGC	1 cut(s)	854
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	4 cut(s)	148, 439, 703, 774
Fnu4HI	GCNGC	7 cut(s)	894, 897, 900, 903, 906, 909, 1083
FokI	GGATG	2 cut(s)	350, 728
FriOI	GRGCYC	1 cut(s)	945
Fsp4HI	GCNGC	7 cut(s)	894, 897, 900, 903, 906, 909, 1083
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	2 cut(s)	141, 1044
GluI	GCNGC	7 cut(s)	894, 897, 900, 903, 906, 909, 1083
HaeII	RGCGCY	2 cut(s)	143, 1046
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	1 cut(s)	602
HhaI	GCGC	2 cut(s)	142, 1045
Hin1II	CATG	9 cut(s)	31, 82, 149, 320, 436, 458, 509, 658, 1070
Hin6I	GCGC	2 cut(s)	140, 1043
HinP1I	GCGC	2 cut(s)	140, 1043
HindIII	AAGCTT	3 cut(s)	20, 515, 1123
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	2 cut(s)	521, 616
Hpy166II	GTNNAC	3 cut(s)	937, 1052, 1234
Hpy188III	TCNNGA	9 cut(s)	107, 317, 359, 455, 544, 655, 666, 707, 1201
Hpy8I	GTNNAC	3 cut(s)	937, 1052, 1234
HpyAV	CCTTC	5 cut(s)	98, 104, 224, 254, 550
HpyCH4III	ACNGT	2 cut(s)	408, 752
HpyCH4V	TGCA	3 cut(s)	27, 828, 974
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 338, 825, 899, 902, 905, 908
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	9 cut(s)	31, 82, 149, 320, 436, 458, 509, 658, 1070
HspAI	GCGC	2 cut(s)	140, 1043
Ksp22I	TGATCA	4 cut(s)	148, 439, 703, 774
LmnI	GCTCC	3 cut(s)	33, 297, 1174
Lsp1109I	GCAGC	4 cut(s)	889, 892, 895, 1094
LweI	GCATC	4 cut(s)	328, 610, 706, 1210
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	2 cut(s)	875, 1069
MflI	RGATCY	2 cut(s)	737, 1153
MhlI	GDGCHC	2 cut(s)	867, 945
MluCI	AATT	6 cut(s)	549, 612, 728, 960, 1226, 1239
MlyI	GAGTC	5 cut(s)	167, 389, 412, 883, 1032
MroXI	GAANNNNTTC	1 cut(s)	836
MseI	TTAA	6 cut(s)	519, 552, 888, 963, 1089, 1158
MslI	CAYNNNNRTG	2 cut(s)	453, 504
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	7 cut(s)	33, 338, 825, 899, 902, 905, 908
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	9 cut(s)	31, 82, 149, 320, 436, 458, 509, 658, 1070
NlaIV	GGNNCC	1 cut(s)	1078
NmuCI	GTSAC	2 cut(s)	875, 1069
NspI	RCATGY	1 cut(s)	1070
PagI	TCATGA	3 cut(s)	316, 454, 654
PciI	ACATGT	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	836
PfeI	GAWTC	5 cut(s)	94, 103, 572, 758, 925
PflFI	GACNNNGTC	1 cut(s)	379
PinAI	ACCGGT	1 cut(s)	601
PkrI	GCNGC	7 cut(s)	895, 898, 901, 904, 907, 910, 1084
PleI	GAGTC	5 cut(s)	167, 388, 412, 882, 1031
PpsI	GAGTC	5 cut(s)	167, 388, 412, 882, 1031
PscI	ACATGT	1 cut(s)	1066
PshBI	ATTAAT	1 cut(s)	1089
PspN4I	GGNNCC	1 cut(s)	1078
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	737, 1153
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	2 cut(s)	453, 504
SaqAI	TTAA	6 cut(s)	519, 552, 888, 963, 1089, 1158
SatI	GCNGC	7 cut(s)	894, 897, 900, 903, 906, 909, 1083
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	5 cut(s)	167, 389, 412, 883, 1032
SduI	GDGCHC	2 cut(s)	867, 945
SfaNI	GCATC	4 cut(s)	328, 610, 706, 1210
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	453, 504
Sse9I	AATT	6 cut(s)	549, 612, 728, 960, 1226, 1239
SsiI	CCGC	7 cut(s)	415, 861, 894, 897, 900, 1080, 1211
SspMI	CTAG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	408, 752
TaqI	TCGA	3 cut(s)	304, 665, 1200
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	6 cut(s)	549, 612, 728, 960, 1226, 1239
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	3 cut(s)	896, 899, 902
TfiI	GAWTC	5 cut(s)	94, 103, 572, 758, 925
Tru1I	TTAA	6 cut(s)	519, 552, 888, 963, 1089, 1158
Tru9I	TTAA	6 cut(s)	519, 552, 888, 963, 1089, 1158
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	2 cut(s)	875, 1069
TseI	GCWGC	4 cut(s)	902, 905, 908, 1082
Tsp45I	GTSAC	2 cut(s)	875, 1069
TspDTI	ATGAA	7 cut(s)	86, 98, 180, 225, 270, 476, 771
TspRI	CASTG	1 cut(s)	757
Tth111I	GACNNNGTC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	408
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	1 cut(s)	1226
XceI	RCATGY	1 cut(s)	1070
XmnI	GAANNNNTTC	1 cut(s)	836
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.