RchiOBHm_Chr1g0352751

Polynucleotide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005030
Physical Location & Seq
Forward (+)
46188474 .. 46190842
2369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGTTGGAACAACACTTCAACTCTGGCATTTCCATTGATATGAAACAATCTTTTTATATTGGTGATGCTGCTGGAAGAAGCAATGATCACAGTGATGCTGTCTTAAGTTTGCAGAGTTCTGTTGTCAGAGTTTTGGACTACCTGATCACCTGTCAGAATTTAATTGAAAAATGCTTCAAGCCAATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

63

Amino Acids

7.07

Weight (kDa)

5.39

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNK3P PF08645 2 - 33 1.9e-06 Polynucleotide kinase 3 phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 157
AflII CTTAAG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 19, 167, 178
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 74, 139
BbvI GCAGC 1 cut(s) 55
BclI TGATCA 2 cut(s) 85, 144
BfrI CTTAAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 2 cut(s) 55, 85
Bse3DI GCAATG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 85, 144
BspTI CTTAAG 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 88
BssMI GATC 2 cut(s) 85, 144
Bst4CI ACNGT 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 103
BstKTI GATC 2 cut(s) 88, 147
BstMBI GATC 2 cut(s) 85, 144
BstV1I GCAGC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 97
CviJI RGCY 1 cut(s) 181
CviKI_1 RGCY 1 cut(s) 181
DpnI GATC 2 cut(s) 87, 146
DpnII GATC 2 cut(s) 85, 144
FaiI YATR 2 cut(s) 41, 57
FbaI TGATCA 2 cut(s) 85, 144
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspEI CC 8 cut(s) 9, 45, 46, 57, 119, 155, 163, 170
GluI GCNGC 1 cut(s) 69
HphI GGTGA 2 cut(s) 74, 139
Hpy188I TCNGA 2 cut(s) 128, 156
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 112
Ksp22I TGATCA 2 cut(s) 85, 144
Kzo9I GATC 2 cut(s) 85, 144
LpnPI CCDG 4 cut(s) 9, 57, 155, 163
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 55, 85
MalI GATC 2 cut(s) 87, 146
MboI GATC 2 cut(s) 85, 144
MboII GAAGA 1 cut(s) 87
MluCI AATT 2 cut(s) 157, 162
MseI TTAA 3 cut(s) 104, 161, 190
MslI CAYNNNNRTG 2 cut(s) 38, 93
MspCI CTTAAG 1 cut(s) 103
NdeII GATC 2 cut(s) 85, 144
PkrI GCNGC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 38, 93
SaqAI TTAA 3 cut(s) 104, 161, 190
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 85, 144
SetI ASST 2 cut(s) 144, 152
SfaNI GCATC 2 cut(s) 55, 85
SgeI CNNG 4 cut(s) 36, 84, 154, 162
SmiMI CAYNNNNRTG 2 cut(s) 38, 93
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 157, 162
TaaI ACNGT 1 cut(s) 92
TasI AATT 2 cut(s) 157, 162
Tru1I TTAA 3 cut(s) 104, 161, 190
Tru9I TTAA 3 cut(s) 104, 161, 190
TscAI CASTG 1 cut(s) 97
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 97
Vha464I CTTAAG 1 cut(s) 103
XapI RAATTY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.