Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006097

Physical Location & Seq

Genomic Coordinates Forward (+)

49071772 .. 49082468

Gene Structure 10697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6798 bp

ATGCAATCGGGCGGAGGAGGAGGAGGTGGGCCCGGGCGGAACCCGGGGGTGGGGCCGGCGGGACGGGCAACGTCGAATTCGTCGGCTGCTTCGCCGTCCTCGTCGTCGTCGGCGGTGTCGACGCCGCACTTGGGGTTTGATTCGGTGCAGCAGCATCAGCAACAGCAGCAGCAATTGGGGTCTAGACAGCCGTTGCAACAACAATATTTAAGAAAGCCTGAAGGGAATGAAGCTCTTTTAGCATATCAAGCTGCTGCTTTCCAAGGAGTTTTGAGTGGGAACAATTTTGTTTCAGCTCCCGGCTCCACTCAAATGCCTCAACAACCTAGGAAGTTCATGGATATGGCTCAACAGCATGGTTCACAGGAGGGGCAGAATAGGAGTCAAGGTGTTGACCAGCAAGTGCTAAATCCAGTCCATCAAGCTTATCTTCAGTATGCTTTTCAGGCTTCACAGCAGAAGTCTGGTTTGGCAATGCAATCTCAGCAGCAACCTAAAATGGGGATGTTGGGGCCTCCATCGGGAAAGGATCAAGACATGCGGTCTGCAAATTTGAAAATGCAGGAATTCAATTCTATGCAGGCAGCTAGCCAGGCACAAGCATCATCATCAAAAAACTTGTCATCAAAGAACTCAACAGAGCATTTTGCTCGTGGAGAAAAGCAGATGGACCGAGGACAGTCACCAGCTTCGGACCAAAGGAGTGAATCTAAGCCTTCAGCCCAGCCAGCAGCTGTAGGACAATTCATGCCTGGAAATCTCATGAGGCCAATGATGGCTCCACAGCAAAGCATGCAAAATATGCCAAACAACCAGATGGCACTGGCTGCTCAGTTGCAAGCATTTGCACTTGAGCACAATATTGATCTTTCACAACCTGGAAATGCCAGCTTGATGGCACAGCTGATTCCAATGTTGCAGTCTAGGATGGCTACTCAACAAAAGGCGAATGAGAGCAACATGGGTGTACAATCGTCTTCTGCTCCGGTTTCAAAGCAGCAGGTTACTTCTCCTCAAGTTGCAAGTGAGAGTTCTCCTCATGCTAATTCATCAAGTGATGTATCTGGGCAGTCAGGCTCTGCAAAAGCAAAGCAGACAGTTTCACCTAGCCCTTTTGGCTCAGGGTCAAGTAGTGGGATCTTTAACAATAGTAACAACATTCCTATGCAGCAGTTTTCTGGTCACGGCAGAGAAAACCAGATACCTCCTAGGCAGTCAGCTCCTTTTGTAAATGGAATGGCTCCTACCCATCCCACACACCCATCTACAAACACAAGCCAAGGTCTCGATCAATCTCTCCATGTAAAAAATTTACCTAACAATCCTGAAACATTGCAAATGCAATACCCTAGGCAGTTAAATCGTTCTTCTCCACAAGCTGTCGTTCCTAATGATGGGGGTTCGGGCAATCACAGTGTTCAGTCACAAGGTGGACCAGCTCCTCAGGTGCCACAACAACGCCCTGGATTCACCAAACAGCAGCTGCATGTTCTCAAAGCACAAATACTAGCATTTAGGCGAATCAAGAAAGGTGAAGGTACACTCCCTCAGGAACTTCTTCGGGCGATTGCTCCACCACCTCTAGAGCAACAGCTACAGCAGCAAATTCTTCCTGGAGGAAATATTCAGGACAAATCTTCTGGGAAGATTGTAGAAGAACATGCTGTGGAGTCCAGTGAAAAAGATTCTCATTCACAGGCTGTGGCATCAGTGAATGGACCGAACATTTCAAAACAGGAAGCTCTTACAGGAGATGAGAAGGCAACTGTATCAACAATTAATGTGCATGGAATGCCTGCTGTGCTGAAGGAACCTACTCCTGTGGTCTCTGTGGGAAAAGAACAACATTCTGCTGTAGCTTCAGTTAAGTCAGACCATGAAGTTGAACGTAGTAACCAAAAAGATTCTGTCAGAAGTGATTTTTCTGTAGATAGGGGAAAGTCTGTTGCACCACAAGTTGCTGTATCTGATGCCATGCAACTTAAAAAGCCCGCACAAGCAAGCTCCACACCCCAGCCAAAAGATGCAGGCTCTGCCAGAAAGTATCATGGACCACTGTTTGATTTCCCCTTTTTCACTAGGAAACATGACTCCTTTGGTTCAGCAATGATGGTAAACAACAACAGCAACAACAGTAATAATAATAATTTAACATTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGTGGAAGTTCTTAACAAGAAGAGGACAGAAAATATAAAGAAGATTGGTGGTCTCTTGGCGGTAAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTTTTGCGGCTGCAAATTGAAGAGAAAAAGCTCCGACTTTTGGATTTTCAGGCACGTTTAAGAGATGAAATTGATCAACAGCAGCAAGAGATAATGGCAATGCCTGACAGGCCTTATCGCAAGTTTGTTCGTCTTTGTGAGCGTCAGCGTATGGAGCTAGCCAGGCAAGTGCAGGCCTCTCAGAAAGCTATGAGAGAGAAGCAACTGAAATCTATTTTCCTGTGGCGTAAAAGGCTTCTTGAAGCTCACTGGTCCATTCGTGATGCACGAACTGCACGCAACAGGGGAGTTGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAAAGAAAGGATGATGATAGAAGCAGAAGGATGGAAGCATTGAAGAATAATGATGTTGAAAGGTACAGGGAAATGTTGCTAGAACAGCAGACTAGTATTACAGGGGATGCAGCAGAGAGATATGCTGTTCTTTCATCATTCCTGAGCCAGACAGAGGAATATCTTCATAAGCTTGGGAGTAAAATAACAGCTGCTAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAATGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTGTCCGAGGAAGAAGTTAGGGTGGCAGCTGCTTGTGCTGGAGAGGAAGTATTGATTAGAAATCGGTTTATAGAAATGAATGCACCAAGAGATAGTTCATCCGTCAACAAGTATTATAGTCTTGCACATGCTGTAAATGAAAGGGTCATAAGACAACCATCAATGTTACGGACTGGAACCTTAAGAGACTATCAACTTGTTGGGCTTCAATGGATGCTTTCTCTGTATAACAACAAGTTAAATGGAATATTGGCAGATGAAATGGGTCTTGGGAAAACTGTACAGGTAATGGCATTGATTGCATATTTGATGGAGTTCAAGGGGAACTATGGACCGCATCTCATAATTGTTCCAAACGCTGTTTTGGTAAATTGGAAGAGTGAGTTGCATACTTGGCTTCCATCTGTCTCTTGCATTTATTATGTTGGGAGCAAGGATCAACGATCAAAATTGTTTTCTCAAGAGGTTTGTGCCTTGAAGTTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGCTCCAAACTATCAAAAATTGATTGGAAGTATATAATAATTGATGAAGCACAGAGGATGAAAGACAGGGAATCCGTTCTAGCACGTGATCTTGATAGATATCGTTGCCAACGGCGCTTGCTGTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCAGAAGTTTTTGATAATCGCAAAGCATTTCATGACTGGTTTTCTAAACCGTTTCAAAGGGAGGCTCCTACACCGGATGCGGATGATGATTGGCTTGAGACTGAGAAAAAGGTTATCATTATCCATCGACTCCATCAAATATTAGAGCCGTTTATGCTCAGGCGGCGGGTTGAAGATGTCGAAGGCGCACTTCCACCAAAGATCTCCATAGTTTTAAGGTGTAGAATGTCGGCTATTCAAAGTGCTGTATATGATTGGATAAAATCAACAGGCACCATTCGTGTTGATCCCGAAGACGAGAAGCTAAGGGTCCAAAAAAATCCACTTTATCAGCCCAAGGTGTATAAAACCTTAAATAATAGGTGTATGGAACTTCGAAAAACTTGCAATCATCCTCTGCTTAATTACCCATACTTCAATGATTTTTCAAAGGATTTTCTCATAAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTAATTAAACTTCAGAGAACAGGGCATCGGGTACTTCTTTTCAGTACCATGACAAAACTCCTTGATATATTGGAGGAATACTTGCAGTGGAGGCGACTTGTGTACAGACGAATTGATGGAACCACCAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAATAGCCCTGGTTCAGACTGCTTCATCTTCTTGCTTAGTATTCGTGCAGCTGGTCGGGGTCTTAATCTCCAGTCTGCGGACACTGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAACAGGCAGTTGCTAGAGCCCACCGTATTGGACAGAAGAGGGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATCCCTAGCCATCAGAAAGAGGATGAACTAAGAACTGGAGGCACTGTTGATTCAGAGGATGACCTTGCTGGTAAGGACCGATATATGGGATCAATTGAGAGCCTCATAAGAAATAATATTCAGCAATACAAGATAGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACTACTCATGAAGAGCGACGAATGACTCTGGAAACTTTACTGCATGATGATGAGAGGTATCAAGAAACTCTCCATGATGTTCCCTCATTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAAGAAGTTGAATTGTTTGATCAAATGGACGAAGAATATGACTGGATTGAGGAGATGACGAGGTATGATCAGGTTCCCAAGTGGCTTCGTACTAGTACAAGAGAAGTAAATACTGTGATTGCTAGTTTATCGAAACGACCATCAAAGAACACTTTGTTGGGTGGAAATATTGGTTTGGAGTCGAGTGAAGTGGGTTCTGAGACTGAAAGAAAGAGGGGTCGACCCAAGGGAAAAAAGCATCTCAGCTATAAGGAAGTAGATGATGAAACTGGAGAATATTCAGAAGCAAGTTCTGATGAGAGAAATGGATATCCCATGCATGAAGAGGAAGGAGAAGTAGGAGAATTGGAAGATGATGAATATAGTGGTGCTGTTGAGGCAACTCCAGTTGAAGATAAGGAACAAGTGGAAGATGGTCCTGAATGTGATGGTGGGTATGATTATCCACCAGCTTCAGAAAGAGTTGGAAATGACCTCATCGTAGAAGAAGCTGGTTCCTCAGGTTCTTCGTCAGACAGTCGGAGATTGATGCAGCCACTTTCTCCTGTTTCCTCTCAGAAGTTTGGTTCCCTGTCTGCCTTAGATGGTAGGTCAGGATCTATTTCAAAGAGGCTGCCAGATGAAGTAGAGGAAGGGGAGATCGTTGTATCTGGAGATTCTCACATGGAACAGGTACAATCTGGAAGTTGGAATCATGACCGTGACGAAGGTGAAGATGAACAGGTTTTGCAGCCCAAGATCAAGAGGAAGCGTAGTATTAGGATTCGCCCTCGTCATACCATAGAAAGGCCTGAAGAGAAGTCTGGTAGTGAGACACAATCTGTCCAACGGGGAGATTCATCTTTGTTACCTTTCCAAGCGGACCATAAATCTCAAGCACATATAAGGGGTGATCCTGAAATGAAAACATATGGAGAATCCAGTGCTTTGAAGCATGACCAAAGTGATTCATCCTCAAAAAGTCGACGAAATTTGCCTACAAGGAGAGCTGCTAGTGCATCAAAATTGCACCCTTCAGCCAAATCTGGCAGATTGAATAACATTTCTGATCCTGCAGATGCTGCTGATCACTACAGAGAAAATTGGGAAGGGAAAGTTGGGAATACAAGTGGGACTTCAGGTTATGTTACAAAAATGCCTGACATCATACAGAGAAGGTGCAAGAATGTTATTAGCAAGCTCCAGAGGAGAATTGATAAGGAAGGTCCTCAAATAGTACCTTTACTCACAGATTTGTGGAAGCGGATTGAAAATTCTGGTTACACAAGTGGATCGGCAAATAACATCTTGGATTTACGAAAAATTGATCAGCGCATAGAGCGGTTAGAGTATAGTGGAGTCATGGAGCTCGTGTTTGATGTCCAGTCTATGTTGAAAAGTTCAATGCAATATTATGGGTTCTCGCATGAGGTACGAACTGAAGCGAGGAAAGTACATGATCTTTTCTTTGATATCTTGAAAATTGCCTTTGCTGACACTGACTTTCGAGAAGCCAGAAGTGCACTCTCTTTTACCAGCCCAGTTGTGGCCACCAATGCTCTATCCCCAAGACCAGGTGTTGGACAAAGCAAGAGACACAAATCGATAAATGAGGTGGAACCTGACCCCAGTCCTCTACAGAAGCCACTACGGGGACCTATTATCAGTAGCGAAGAAACAAGGGTAAGAAGCCATATGCCTCAGAAGGAATCAAGACTTGGGAGTGGTAGTGGTAATAGTCGGGAGCACTATCAGCCAGAGGATTCTCCATTGCTTGCTCATCCAGGAGATCTGGTTATCTGCAAGAAGAAGAGAAAAGACAGGGAAAAGACTGGGGTAAAGACTAGGAATGGACCAGCTGGCCCTGTTTCACCCCCTAGCATGGGTCGCAGTATTAGAAGTCCTGGGCCAAATTCAGTCCCAAGGGAGACAAGATCAACCCAACAGGCATCACATTCACAAGGGTGGGCCAACCAGCCTTCGCAGCCTGCTCAGCCCGCAAACAGGGGTACAGGGTCCGTTGGTTGGGCAAATCCAGTAAAGAGGTTAAGGACGGATTCTGGAAAGAGAAGGCCAAGCCACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

2265

Amino Acids

253.51

Weight (kDa)

8.8

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	490 - 523	5.5e-08	QLQ
ResIII	PF04851	1018 - 1178	2e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1022 - 1326	3.1e-84	SNF2-related domain
DEAD	PF00270	1039 - 1182	1.8e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	1347 - 1460	1.5e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020
fragaria_vesca	FvH4_7g14720
malus_domestica	MD01G1065800.v1.1 MD07G1134800.v1.1
prunus_persica	Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1
pyrus_communis	pycom01g09500 pycom01g09510 pycom07g13210
rosa_chinensis	RchiOBHm_Chr1g0356661
rosa_laevigata	RLG00000028089
rosa_multiflora	Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299450
rosa_rugosa	Rorug01G0250400
rosa_samantha	Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500
rosa_wichuraiana	Rw1G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	4310
Acc36I	ACCTGC	1 cut(s)	991
AccB1I	GGYRCC	2 cut(s)	1447, 3854
AccB7I	CCANNNNNTGG	1 cut(s)	6290
AccBSI	CCGCTC	1 cut(s)	6052
AccI	GTMKAC	3 cut(s)	119, 4951, 5695
AcoI	YGGCCR	1 cut(s)	6258
AcsI	RAATTY	8 cut(s)	76, 550, 566, 1309, 1605, 5701, 5983, 6622
AcvI	CACGTG	1 cut(s)	3482
AcyI	GRCGYC	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	1430
AflII	CTTAAG	1 cut(s)	3055
AhdI	GACNNNNNGTC	1 cut(s)	541
AhlI	ACTAGT	2 cut(s)	2708, 4823
AleI	CACNNNNGTG	1 cut(s)	6673
Alw21I	GWGCWC	4 cut(s)	858, 6081, 6235, 6459
Alw44I	GTGCAC	1 cut(s)	6231
AlwNI	CAGNNNCTG	7 cut(s)	734, 1079, 1483, 2033, 2858, 2875, 5792
Ama87I	CYCGRG	2 cut(s)	32, 43
ApaI	GGGCCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	6231
ApoI	RAATTY	8 cut(s)	76, 550, 566, 1309, 1605, 5701, 5983, 6622
ArsI	GACNNNNNNTTYG	4 cut(s)	605, 637, 2165, 2197
AseI	ATTAAT	1 cut(s)	1779
Asp700I	GAANNNNTTC	3 cut(s)	1557, 2778, 3471
AspA2I	CCTAGG	3 cut(s)	326, 1208, 1349
AspLEI	GCGC	3 cut(s)	3513, 3770, 6045
AsuC2I	CCSGG	5 cut(s)	33, 34, 44, 45, 300
AsuHPI	GGTGA	7 cut(s)	675, 1095, 1462, 1544, 5453, 5633, 6573
AsuII	TTCGAA	1 cut(s)	3958
AsuNHI	GCTAGC	2 cut(s)	587, 2446
AvaI	CYCGRG	2 cut(s)	32, 43
AvrII	CCTAGG	3 cut(s)	326, 1208, 1349
AxyI	CCTNAGG	3 cut(s)	1443, 1548, 5230
BaeGI	GKGCMC	2 cut(s)	33, 6235
BalI	TGGCCA	1 cut(s)	6260
BamHI	GGATCC	2 cut(s)	4047, 4059
BanI	GGYRCC	2 cut(s)	1447, 3854
BanII	GRGCYC	3 cut(s)	33, 4369, 6081
BauI	CACGAG	2 cut(s)	651, 6080
BbrPI	CACGTG	1 cut(s)	3482
BbsI	GAAGAC	2 cut(s)	969, 3882
Bbv12I	GWGCWC	4 cut(s)	858, 6081, 6235, 6459
BceAI	ACGGC	5 cut(s)	79, 175, 1201, 3524, 3715
BcgI	CGANNNNNNTGC	6 cut(s)	632, 666, 1343, 1377, 3948, 3982
BclI	TGATCA	5 cut(s)	2362, 4750, 4798, 5797, 6037
BcnI	CCSGG	5 cut(s)	33, 34, 44, 45, 300
BcuI	ACTAGT	2 cut(s)	2708, 4823
BfmI	CTRYAG	9 cut(s)	735, 1595, 1854, 1926, 2850, 4212, 5784, 5803, 6347
BfoI	RGCGCY	1 cut(s)	3514
BfrI	CTTAAG	1 cut(s)	3055
BfuAI	ACCTGC	1 cut(s)	991
BglI	GCCNNNNNGGC	2 cut(s)	1116, 2398
BglII	AGATCT	3 cut(s)	2284, 3783, 6499
BlnI	CCTAGG	3 cut(s)	326, 1208, 1349
BlpI	GCTNAGC	1 cut(s)	6702
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmeT110I	CYCGRG	2 cut(s)	32, 43
BmrI	ACTGGG	3 cut(s)	6245, 6333, 6552
BmtI	GCTAGC	2 cut(s)	591, 2450
BmuI	ACTGGG	3 cut(s)	6245, 6333, 6552
BoxI	GACNNNNGTC	1 cut(s)	6339
BpiI	GAAGAC	2 cut(s)	969, 3882
BplI	GAGNNNNNCTC	4 cut(s)	1021, 1053, 4597, 4629
BpmI	CTGGAG	8 cut(s)	1635, 2934, 4277, 4485, 5022, 5100, 5403, 5897
Bpu10I	CCTNAGC	4 cut(s)	1120, 2759, 3740, 3887
Bpu1102I	GCTNAGC	1 cut(s)	6702
Bpu14I	TTCGAA	1 cut(s)	3958
BpuEI	CTTGAG	5 cut(s)	872, 999, 3318, 3698, 5589
BpuMI	CCSGG	5 cut(s)	33, 34, 44, 45, 300
Bsa29I	ATCGAT	1 cut(s)	6314
BsaAI	YACGTR	1 cut(s)	3482
BsaBI	GATNNNNATC	2 cut(s)	3495, 4326
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	3 cut(s)	1289, 1831, 2249
BsaWI	WCCGGW	2 cut(s)	985, 3655
Bse118I	RCCGGY	1 cut(s)	55
Bse21I	CCTNAGG	3 cut(s)	1443, 1548, 5230
Bse3DI	GCAATG	7 cut(s)	480, 1331, 2112, 2394, 3533, 4694, 6479
Bse8I	GATNNNNATC	2 cut(s)	3495, 4326
BseCI	ATCGAT	1 cut(s)	6314
BseJI	GATNNNNATC	2 cut(s)	3495, 4326
BseMI	GCAATG	7 cut(s)	480, 1331, 2112, 2394, 3533, 4694, 6479
BseRI	GAGGAG	8 cut(s)	30, 33, 36, 1002, 1026, 1431, 4796, 5932
BseSI	GKGCMC	2 cut(s)	33, 6235
BseYI	CCCAGC	3 cut(s)	723, 2013, 4589
BsgI	GTGCAG	5 cut(s)	167, 2480, 2547, 2844, 4290
BshNI	GGYRCC	2 cut(s)	1447, 3854
BshVI	ATCGAT	1 cut(s)	6314
BsiHKAI	GWGCWC	4 cut(s)	858, 6081, 6235, 6459
BsiHKCI	CYCGRG	2 cut(s)	32, 43
BsiSI	CCGG	6 cut(s)	33, 44, 56, 300, 986, 3656
BslFI	GGGAC	4 cut(s)	75, 5857, 6378, 6614
BsmFI	GGGAC	4 cut(s)	75, 5857, 6378, 6614
BsmI	GAATGC	2 cut(s)	1797, 2959
Bso31I	GGTCTC	3 cut(s)	1289, 1831, 2249
BsoBI	CYCGRG	2 cut(s)	32, 43
Bsp119I	TTCGAA	1 cut(s)	3958
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	6 cut(s)	33, 858, 4369, 6081, 6235, 6459
Bsp1407I	TGTACA	3 cut(s)	967, 3154, 4164
Bsp1720I	GCTNAGC	1 cut(s)	6702
BspDI	ATCGAT	1 cut(s)	6314
BspHI	TCATGA	5 cut(s)	762, 2590, 3613, 4615, 5425
BspMAI	CTGCAG	2 cut(s)	2854, 5788
BspMI	ACCTGC	1 cut(s)	991
BspOI	GCTAGC	2 cut(s)	591, 2450
BspQI	GCTCTTC	1 cut(s)	4614
BspT104I	TTCGAA	1 cut(s)	3958
BspT107I	GGYRCC	2 cut(s)	1447, 3854
BspTI	CTTAAG	1 cut(s)	3055
BspTNI	GGTCTC	3 cut(s)	1289, 1831, 2249
BsrBI	CCGCTC	1 cut(s)	6052
BsrDI	GCAATG	7 cut(s)	480, 1331, 2112, 2394, 3533, 4694, 6479
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	3 cut(s)	967, 3154, 4164
BssAI	RCCGGY	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	122
BssSI	CACGAG	2 cut(s)	651, 6080
BssT1I	CCWWGG	8 cut(s)	262, 326, 1208, 1279, 1349, 3918, 4956, 6632
Bst2BI	CACGAG	2 cut(s)	651, 6080
Bst6I	CTCTTC	9 cut(s)	2207, 2304, 2826, 3245, 4379, 4614, 5049, 5520, 6515
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	3055
BstAUI	TGTACA	3 cut(s)	967, 3154, 4164
BstBAI	YACGTR	1 cut(s)	3482
BstBI	TTCGAA	1 cut(s)	3958
BstH2I	RGCGCY	1 cut(s)	3514
BstHHI	GCGC	3 cut(s)	3513, 3770, 6045
BstNSI	RCATGY	5 cut(s)	541, 796, 1490, 1664, 3005
BstPAI	GACNNNNGTC	1 cut(s)	6339
BstSFI	CTRYAG	9 cut(s)	735, 1595, 1854, 1926, 2850, 4212, 5784, 5803, 6347
BstSLI	GKGCMC	2 cut(s)	33, 6235
BstV2I	GAAGAC	2 cut(s)	969, 3882
BstX2I	RGATCY	8 cut(s)	1137, 2284, 3783, 4028, 4047, 4059, 5327, 6499
BstXI	CCANNNNNNTGG	2 cut(s)	895, 4376
BstYI	RGATCY	8 cut(s)	1137, 2284, 3783, 4028, 4047, 4059, 5327, 6499
Bsu15I	ATCGAT	1 cut(s)	6314
Bsu36I	CCTNAGG	3 cut(s)	1443, 1548, 5230
BsuTUI	ATCGAT	1 cut(s)	6314
BtsI	GCAGTG	1 cut(s)	4154
BveI	ACCTGC	1 cut(s)	991
CaiI	CAGNNNCTG	7 cut(s)	734, 1079, 1483, 2033, 2858, 2875, 5792
CciI	TCATGA	5 cut(s)	762, 2590, 3613, 4615, 5425
CfoI	GCGC	3 cut(s)	3513, 3770, 6045
Cfr10I	RCCGGY	1 cut(s)	55
Cfr9I	CCCGGG	2 cut(s)	32, 43
ClaI	ATCGAT	1 cut(s)	6314
CseI	GACGC	2 cut(s)	130, 2420
CsiI	ACCWGGT	1 cut(s)	6283
DraI	TTTAAA	1 cut(s)	3570
DraIII	CACNNNGTG	1 cut(s)	1430
DrdI	GACNNNNNNGTC	1 cut(s)	4310
DriI	GACNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	4310
EaeI	YGGCCR	1 cut(s)	6258
Eam1104I	CTCTTC	9 cut(s)	2207, 2304, 2826, 3245, 4379, 4614, 5049, 5520, 6515
Eam1105I	GACNNNNNGTC	1 cut(s)	541
EarI	CTCTTC	9 cut(s)	2207, 2304, 2826, 3245, 4379, 4614, 5049, 5520, 6515
EciI	GGCGGA	2 cut(s)	27, 52
Ecl136II	GAGCTC	1 cut(s)	6079
Eco130I	CCWWGG	8 cut(s)	262, 326, 1208, 1279, 1349, 3918, 4956, 6632
Eco147I	AGGCCT	3 cut(s)	2401, 2465, 5521
Eco24I	GRGCYC	3 cut(s)	33, 4369, 6081
Eco31I	GGTCTC	3 cut(s)	1289, 1831, 2249
Eco32I	GATATC	3 cut(s)	3497, 5042, 6184
Eco53kI	GAGCTC	1 cut(s)	6079
Eco72I	CACGTG	1 cut(s)	3482
Eco81I	CCTNAGG	3 cut(s)	1443, 1548, 5230
Eco88I	CYCGRG	2 cut(s)	32, 43
EcoICRI	GAGCTC	1 cut(s)	6079
EcoO109I	RGGNCCY	3 cut(s)	512, 5936, 6365
EcoRI	GAATTC	2 cut(s)	76, 566
EcoRV	GATATC	3 cut(s)	3497, 5042, 6184
EcoT14I	CCWWGG	8 cut(s)	262, 326, 1208, 1279, 1349, 3918, 4956, 6632
EcoT22I	ATGCAT	1 cut(s)	5052
EcoT38I	GRGCYC	3 cut(s)	33, 4369, 6081
ErhI	CCWWGG	8 cut(s)	262, 326, 1208, 1279, 1349, 3918, 4956, 6632
FalI	AAGNNNNNCTT	8 cut(s)	414, 446, 2163, 2195, 3756, 3788, 5830, 5862
FaqI	GGGAC	4 cut(s)	75, 5857, 6378, 6614
FauI	CCCGC	4 cut(s)	52, 1999, 3741, 6715
FauNDI	CATATG	3 cut(s)	2161, 5641, 6405
FbaI	TGATCA	5 cut(s)	2362, 4750, 4798, 5797, 6037
FblI	GTMKAC	3 cut(s)	119, 4951, 5695
FriOI	GRGCYC	3 cut(s)	33, 4369, 6081
GlaI	GCGC	3 cut(s)	3512, 3769, 6044
GsaI	CCCAGC	3 cut(s)	727, 2017, 4593
GsuI	CTGGAG	8 cut(s)	1635, 2934, 4277, 4485, 5022, 5100, 5403, 5897
HaeII	RGCGCY	1 cut(s)	3514
HapII	CCGG	6 cut(s)	33, 44, 56, 300, 986, 3656
HgaI	GACGC	2 cut(s)	130, 2420
HhaI	GCGC	3 cut(s)	3513, 3770, 6045
Hin1I	GRCGYC	1 cut(s)	122
Hin6I	GCGC	3 cut(s)	3511, 3768, 6043
HinP1I	GCGC	3 cut(s)	3511, 3768, 6043
HincII	GTYRAC	7 cut(s)	120, 394, 2980, 3522, 4423, 4952, 5696
HindII	GTYRAC	7 cut(s)	120, 394, 2980, 3522, 4423, 4952, 5696
HindIII	AAGCTT	2 cut(s)	423, 2786
HpaII	CCGG	6 cut(s)	33, 44, 56, 300, 986, 3656
HphI	GGTGA	7 cut(s)	675, 1095, 1462, 1544, 5453, 5633, 6573
Hpy99I	CGWCG	8 cut(s)	76, 85, 106, 109, 112, 124, 4629, 5700
HpyCH4IV	ACGT	4 cut(s)	71, 1888, 2344, 3481
HpySE526I	ACGT	4 cut(s)	71, 1888, 2344, 3481
Hsp92I	GRCGYC	1 cut(s)	122
HspAI	GCGC	3 cut(s)	3511, 3768, 6043
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	5 cut(s)	2362, 4750, 4798, 5797, 6037
LguI	GCTCTTC	1 cut(s)	4614
MabI	ACCWGGT	1 cut(s)	6283
MaeII	ACGT	4 cut(s)	71, 1888, 2344, 3481
MbiI	CCGCTC	1 cut(s)	6052
MfeI	CAATTG	2 cut(s)	173, 4521
MflI	RGATCY	8 cut(s)	1137, 2284, 3783, 4028, 4047, 4059, 5327, 6499
MhlI	GDGCHC	6 cut(s)	33, 858, 4369, 6081, 6235, 6459
MlsI	TGGCCA	1 cut(s)	6260
MluNI	TGGCCA	1 cut(s)	6260
MlyI	GAGTC	7 cut(s)	391, 1679, 2084, 3705, 4627, 4919, 6078
MmeI	TCCRAC	6 cut(s)	2347, 5176, 5231, 5399, 5581, 6271
Mox20I	TGGCCA	1 cut(s)	6260
Mph1103I	ATGCAT	1 cut(s)	5052
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	3 cut(s)	1557, 2778, 3471
MscI	TGGCCA	1 cut(s)	6260
MslI	CAYNNNNRTG	7 cut(s)	311, 341, 1163, 4406, 4656, 5430, 6673
Msp20I	TGGCCA	1 cut(s)	6260
MspA1I	CMGCKG	8 cut(s)	734, 904, 1483, 2807, 2855, 2903, 4274, 6569
MspCI	CTTAAG	1 cut(s)	3055
MspI	CCGG	6 cut(s)	33, 44, 56, 300, 986, 3656
MunI	CAATTG	2 cut(s)	173, 4521
Mva1269I	GAATGC	2 cut(s)	1797, 2959
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	5 cut(s)	33, 34, 44, 45, 300
NdeI	CATATG	3 cut(s)	2161, 5641, 6405
NgoMIV	GCCGGC	1 cut(s)	55
NheI	GCTAGC	2 cut(s)	587, 2446
NmuCI	GTSAC	6 cut(s)	681, 1181, 1422, 3367, 3561, 5432
NsiI	ATGCAT	1 cut(s)	5052
NspI	RCATGY	5 cut(s)	541, 796, 1490, 1664, 3005
NspV	TTCGAA	1 cut(s)	3958
OliI	CACNNNNGTG	1 cut(s)	6673
PaeI	GCATGC	1 cut(s)	796
PagI	TCATGA	5 cut(s)	762, 2590, 3613, 4615, 5425
PceI	AGGCCT	3 cut(s)	2401, 2465, 5521
PciSI	GCTCTTC	1 cut(s)	4614
PcsI	WCGNNNNNNNCGW	4 cut(s)	77, 98, 116, 2554
PctI	GAATGC	2 cut(s)	1797, 2959
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	3 cut(s)	1557, 2778, 3471
PflMI	CCANNNNNTGG	1 cut(s)	6290
PfoI	TCCNGGA	3 cut(s)	1612, 4050, 6493
PleI	GAGTC	7 cut(s)	390, 1678, 2084, 3705, 4627, 4918, 6077
PmaCI	CACGTG	1 cut(s)	3482
PmlI	CACGTG	1 cut(s)	3482
PpsI	GAGTC	7 cut(s)	390, 1678, 2084, 3705, 4627, 4918, 6077
Ppu21I	YACGTR	1 cut(s)	3482
PpuMI	RGGWCCY	2 cut(s)	5936, 6365
PshAI	GACNNNNGTC	1 cut(s)	6339
PshBI	ATTAAT	1 cut(s)	1779
Psp124BI	GAGCTC	1 cut(s)	6081
Psp5II	RGGWCCY	2 cut(s)	5936, 6365
PspCI	CACGTG	1 cut(s)	3482
PspFI	CCCAGC	3 cut(s)	723, 2013, 4589
PspOMI	GGGCCC	1 cut(s)	29
PspPPI	RGGWCCY	2 cut(s)	5936, 6365
PstI	CTGCAG	2 cut(s)	2854, 5788
PstNI	CAGNNNCTG	7 cut(s)	734, 1079, 1483, 2033, 2858, 2875, 5792
PsuI	RGATCY	8 cut(s)	1137, 2284, 3783, 4028, 4047, 4059, 5327, 6499
PvuII	CAGCTG	8 cut(s)	734, 904, 1483, 2807, 2855, 2903, 4274, 6569
RseI	CAYNNNNRTG	7 cut(s)	311, 341, 1163, 4406, 4656, 5430, 6673
SacI	GAGCTC	1 cut(s)	6081
SalI	GTCGAC	3 cut(s)	118, 4950, 5694
SapI	GCTCTTC	1 cut(s)	4614
SchI	GAGTC	7 cut(s)	391, 1679, 2084, 3705, 4627, 4919, 6078
SduI	GDGCHC	6 cut(s)	33, 858, 4369, 6081, 6235, 6459
SexAI	ACCWGGT	1 cut(s)	6283
SfcI	CTRYAG	9 cut(s)	735, 1595, 1854, 1926, 2850, 4212, 5784, 5803, 6347
SfuI	TTCGAA	1 cut(s)	3958
SmaI	CCCGGG	2 cut(s)	34, 45
SmiMI	CAYNNNNRTG	7 cut(s)	311, 341, 1163, 4406, 4656, 5430, 6673
SmlI	CTYRAG	6 cut(s)	851, 1014, 3055, 3333, 3677, 5604
SmoI	CTYRAG	6 cut(s)	851, 1014, 3055, 3333, 3677, 5604
SpeI	ACTAGT	2 cut(s)	2708, 4823
SphI	GCATGC	1 cut(s)	796
SrfI	GCCCGGGC	1 cut(s)	34
SseBI	AGGCCT	3 cut(s)	2401, 2465, 5521
SspI	AATATT	9 cut(s)	206, 862, 1624, 3123, 3723, 4546, 4900, 5009, 6122
SstI	GAGCTC	1 cut(s)	6081
StuI	AGGCCT	3 cut(s)	2401, 2465, 5521
StyI	CCWWGG	8 cut(s)	262, 326, 1208, 1279, 1349, 3918, 4956, 6632
TaiI	ACGT	4 cut(s)	74, 1891, 2347, 3484
TaqII	GACCGA	3 cut(s)	687, 1735, 4521
TatI	WGTACW	5 cut(s)	967, 3154, 4164, 4826, 6163
TauI	GCSGC	3 cut(s)	127, 2299, 3748
TseFI	GTSAC	6 cut(s)	681, 1181, 1422, 3367, 3561, 5432
Tsp45I	GTSAC	6 cut(s)	681, 1181, 1422, 3367, 3561, 5432
TspGWI	ACGGA	5 cut(s)	2965, 3058, 3460, 6718, 6779
TspMI	CCCGGG	2 cut(s)	32, 43
Van91I	CCANNNNNTGG	1 cut(s)	6290
Vha464I	CTTAAG	1 cut(s)	3055
VneI	GTGCAC	1 cut(s)	6231
VspI	ATTAAT	1 cut(s)	1779
XapI	RAATTY	8 cut(s)	76, 550, 566, 1309, 1605, 5701, 5983, 6622
XbaI	TCTAGA	2 cut(s)	182, 1582
XceI	RCATGY	5 cut(s)	541, 796, 1490, 1664, 3005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	6253
XmaI	CCCGGG	2 cut(s)	32, 43
XmaJI	CCTAGG	3 cut(s)	326, 1208, 1349
XmiI	GTMKAC	3 cut(s)	119, 4951, 5695
XmnI	GAANNNNTTC	3 cut(s)	1557, 2778, 3471
Zsp2I	ATGCAT	1 cut(s)	5052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.