RchiOBHm_Chr1g0365881

helix loop helix domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002277
Physical Location & Seq
Reverse (-)
56660087 .. 56662433
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
ATGACAAATTGGGATACTCAAATGAACATGAATAGAAAGATTGGCTTTTGCATGGGGTCCAAAGCAATAGAAAGTGACAACGAAACAGGAGACATTTCTGATGTTCCTTTTGATCAGTCATCACTCTTTACCTATCAGACAGCAGTAACAGCAGGTTATTCCAATGGGGAATTCAGATATGATCATGGCATTTTTCAGCACCCAATGTTGTTTGACAAGAATATTAATTCAGCTACCCAATTTCAAGAGGATTTGCAGGTCATACAGAATGCAAGGAAGCGCCCAATAATTGAGGTCAATGATATCTTGCCCAAAAATGACCTTGGTGGTTCAATTGGTGAGAGAACAACTTCAAATGAATGGAACCAAAACAAGAGAAACAAGGGGACAAATTCTCAACAACAATGGCATAATCAATTCCAAGAAGCATCTATGGAAAAACAAGACAATAGGAAGTTGCAAGTTCCTGTGAGGCGAAGCCAAAAGCTTAGTGACAAAATCACTGCTCTTCAAAAATTGGTTTCCCCCTATGGCAAGACTGACACTGCCTCAGTTCTTCAAGAGGCTTCGATTTACATCGTGCTTCTTCAACAACAAATTCAGAATCTGCATCGGATCTTTAGTAGTTCATACAAGAATGCTGCAGGACTTCACACACAAGAATCTGGGAGTAGTAGCCAAGTGCTTGACCTCAGAAGCAATGGCCTTTGTTTGGTTCCGATTTCCTTGACTCAGAAAGTGACTATGGAAGAGGGTTTTGATGAGGATCATCTTTCTACATCAAGAAAATTTGTCATAGCTAACCATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.64

Weight (kDa)

6.39

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 143, 247
AclWI GGATC 2 cut(s) 623, 774
AcsI RAATTY 4 cut(s) 170, 391, 597, 788
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 6 cut(s) 245, 333, 354, 512, 560, 590
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 233, 487, 800
AluI AGCT 3 cut(s) 233, 487, 800
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 2 cut(s) 623, 774
AlwNI CAGNNNCTG 1 cut(s) 607
AoxI GGCC 1 cut(s) 703
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 4 cut(s) 170, 391, 597, 788
AseI ATTAAT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 349
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 628
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 2 cut(s) 112, 181
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 811
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 283
BfuAI ACCTGC 2 cut(s) 143, 247
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 58, 365, 717
BmsI GCATC 2 cut(s) 437, 619
BsaBI GATNNNNATC 2 cut(s) 575, 765
BsaJI CCNNGG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 2 cut(s) 575, 765
BseDI CCNNGG 1 cut(s) 322
BseJI GATNNNNATC 2 cut(s) 575, 765
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 3 cut(s) 564, 706, 746
BseXI GCAGC 1 cut(s) 628
BshFI GGCC 1 cut(s) 705
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 2 cut(s) 274, 643
BsnI GGCC 1 cut(s) 705
Bsp143I GATC 4 cut(s) 112, 181, 615, 766
BspANI GGCC 1 cut(s) 705
BspCNI CTCAG 3 cut(s) 563, 705, 745
BspLI GGNNCC 3 cut(s) 58, 365, 717
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 2 cut(s) 143, 247
BspPI GGATC 2 cut(s) 623, 774
BspQI GCTCTTC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 706
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 4 cut(s) 112, 181, 615, 766
BssT1I CCWWGG 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 513, 744
BstDEI CTNAG 4 cut(s) 488, 550, 692, 732
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 4 cut(s) 115, 184, 618, 769
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 112, 181, 615, 766
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 615
BstYI RGATCY 1 cut(s) 615
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 705
BtsI GCAGTG 2 cut(s) 501, 543
BtsIMutI CAGTG 2 cut(s) 501, 543
BveI ACCTGC 2 cut(s) 143, 247
CaiI CAGNNNCTG 1 cut(s) 607
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 3 cut(s) 28, 52, 185
CviJI RGCY 8 cut(s) 45, 233, 480, 487, 566, 678, 705, 800
CviKI_1 RGCY 8 cut(s) 45, 233, 480, 487, 566, 678, 705, 800
DdeI CTNAG 4 cut(s) 488, 550, 692, 732
DpnI GATC 4 cut(s) 114, 183, 617, 768
DpnII GATC 4 cut(s) 112, 181, 615, 766
Eam1104I CTCTTC 2 cut(s) 513, 744
EarI CTCTTC 2 cut(s) 513, 744
Eco130I CCWWGG 1 cut(s) 322
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 170
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 3 cut(s) 31, 55, 188
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 27, 51, 184
FbaI TGATCA 2 cut(s) 112, 181
Fnu4HI GCNGC 1 cut(s) 642
Fsp4HI GCNGC 1 cut(s) 642
FspBI CTAG 1 cut(s) 811
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 1 cut(s) 705
HhaI GCGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 31, 55, 188
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 3 cut(s) 604, 662, 730
HphI GGTGA 1 cut(s) 350
Hpy188I TCNGA 8 cut(s) 100, 138, 176, 603, 615, 695, 720, 735
Hpy188III TCNNGA 3 cut(s) 245, 560, 783
HpyCH4V TGCA 6 cut(s) 51, 256, 272, 460, 610, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 4 cut(s) 488, 550, 692, 732
Hsp92II CATG 3 cut(s) 31, 55, 188
HspAI GCGC 1 cut(s) 280
Ksp22I TGATCA 2 cut(s) 112, 181
Kzo9I GATC 4 cut(s) 112, 181, 615, 766
LguI GCTCTTC 1 cut(s) 513
LpnPI CCDG 6 cut(s) 72, 138, 242, 480, 630, 651
Lsp1109I GCAGC 1 cut(s) 628
LweI GCATC 2 cut(s) 437, 619
MaeI CTAG 1 cut(s) 811
MaeIII GTNAC 4 cut(s) 74, 145, 491, 739
MalI GATC 4 cut(s) 114, 183, 617, 768
MboI GATC 4 cut(s) 112, 181, 615, 766
MboII GAAGA 4 cut(s) 500, 548, 578, 761
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 615
MlyI GAGTC 1 cut(s) 724
MnlI CCTC 8 cut(s) 241, 286, 465, 556, 559, 701, 745, 757
MroXI GAANNNNTTC 1 cut(s) 349
MseI TTAA 1 cut(s) 225
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 2 cut(s) 274, 643
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 4 cut(s) 112, 181, 615, 766
NlaIII CATG 3 cut(s) 31, 55, 188
NlaIV GGNNCC 3 cut(s) 58, 365, 717
NmuCI GTSAC 3 cut(s) 74, 491, 739
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 2 cut(s) 274, 643
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 2 cut(s) 604, 662
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PshBI ATTAAT 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 58, 365, 717
PspPI GGNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 1 cut(s) 615
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 4 cut(s) 112, 181, 615, 766
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 724
SetI ASST 9 cut(s) 134, 157, 235, 261, 297, 324, 489, 693, 802
SfaNI GCATC 2 cut(s) 437, 619
SfcI CTRYAG 1 cut(s) 642
SinI GGWCC 1 cut(s) 57
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 811
StyI CCWWGG 1 cut(s) 322
TaqI TCGA 1 cut(s) 569
TfiI GAWTC 2 cut(s) 604, 662
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 508, 550
TseFI GTSAC 3 cut(s) 74, 491, 739
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 3 cut(s) 74, 491, 739
TspDTI ATGAA 4 cut(s) 38, 44, 372, 618
TspRI CASTG 2 cut(s) 508, 550
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 4 cut(s) 170, 391, 597, 788
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.