RchiOBHm_Chr1g0378241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005288
Physical Location & Seq
Reverse (-)
64803246 .. 64805988
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
ATGATCAGTTCTTCTAGCATGATCAGCATGGGAAAATGCAAAGGTTGTGGGAAATTAGGAAGAATGATGCCAAGGGGTGGATCAGTGAGCACGTATCAGTTTGCCCTTCTGTTGTCTCCTGTTGTTTCTGTCTGGGATTGCATCGTACGCAAAATGAGAAAAGTTAAGAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAGGCTGAGAAAAAGAAGAGGCGCTTGGAGAAAGCTCTTGCTACTTCAGCTGCCATCATTTCGGAACTAGAAAAGAAAAAACAGAAGAAGAAGGAAGAGCAACAGAGGCTTGATGAAGAGGGTGCTGCAATTGCCGAGGCTGTTGCCCTGCATGTTCTATTGGACGAAGACTCTGATGACAGGTGCGAAATTGTTATGAACAAAGATGAAGTGCTTAAGTCCTGGGATTGTCCTGGTGATTTTGACTTGTTTATGGGTGGAGGAAGGGCTTGCTATCCTTACCAGGATTCTGCAAAGTGTTCACTTGAAGGAATGGGGTGGGGATCTAATGGTTACAGATCAGGGTGCAAGTGGGGTGGTTTGGGGAACAATGAATGGGCATTCTCAACTAGGCCTTATGGAAGGGATTACCGCCACCCTTCATTTTGCCAGGAAGCAGGTTGGGGGCCAACAGGATTTGCTGCTGGTCTCATTGCGGCACAGGCTGTTTCATCTCTCCAGATTGCAGAGGATTCACATGAAGGCACAATTGTGCTTGATGGTATGCTAAGACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.02

Weight (kDa)

8.77

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 2 cut(s) 166, 632
AccB7I CCANNNNNTGG 1 cut(s) 77
AciI CCGC 2 cut(s) 616, 680
AclWI GGATC 3 cut(s) 88, 201, 535
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 77
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 512
AjnI CCWGG 4 cut(s) 425, 436, 486, 633
AjuI GAANNNNNNNTTGG 4 cut(s) 173, 205, 212, 244
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 2 cut(s) 239, 254
AluI AGCT 2 cut(s) 239, 254
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 2 cut(s) 120, 677
AlwI GGATC 3 cut(s) 88, 201, 535
AoxI GGCC 2 cut(s) 596, 650
ApeKI GCWGC 3 cut(s) 254, 329, 665
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 2 cut(s) 190, 452
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 241, 316, 652
BccI CCATC 2 cut(s) 266, 737
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 4 cut(s) 427, 438, 488, 635
BclI TGATCA 2 cut(s) 3, 21
BcoDI GTCTC 2 cut(s) 120, 677
BfaI CTAG 3 cut(s) 15, 272, 594
BfoI RGCGCY 1 cut(s) 229
BfrI CTTAAG 1 cut(s) 419
BfuAI ACCTGC 2 cut(s) 166, 632
BisI GCNGC 4 cut(s) 255, 330, 666, 681
BlsI GCNGC 4 cut(s) 256, 331, 667, 682
Bme1390I CCNGG 4 cut(s) 427, 438, 488, 635
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 4 cut(s) 427, 438, 488, 635
BmsI GCATC 2 cut(s) 57, 150
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 686
BsaAI YACGTR 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 3 cut(s) 71, 339, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 675
BseBI CCWGG 4 cut(s) 427, 438, 488, 635
BseDI CCNNGG 3 cut(s) 71, 339, 426
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 241, 316, 652
BshFI GGCC 2 cut(s) 598, 652
BsiHKAI GWGCWC 1 cut(s) 92
BsiWI CGTACG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 120, 677
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 598, 652
Bso31I GGTCTC 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 6 cut(s) 3, 21, 80, 193, 527, 542
BspACI CCGC 2 cut(s) 616, 680
BspANI GGCC 2 cut(s) 598, 652
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 651
BspMI ACCTGC 2 cut(s) 166, 632
BspPI GGATC 3 cut(s) 88, 201, 535
BspQI GCTCTTC 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 675
BssECI CCNNGG 3 cut(s) 71, 339, 426
BssMI GATC 6 cut(s) 3, 21, 80, 193, 527, 542
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 4 cut(s) 427, 438, 488, 635
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 3 cut(s) 215, 294, 315
BstAFI CTTAAG 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 2 cut(s) 210, 752
BstF5I GGATG 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 6, 24, 83, 196, 530, 545
BstMAI GTCTC 2 cut(s) 120, 677
BstMBI GATC 6 cut(s) 3, 21, 80, 193, 527, 542
BstMWI GCNNNNNNNGC 6 cut(s) 24, 147, 251, 310, 335, 686
BstNI CCWGG 4 cut(s) 427, 438, 488, 635
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 4 cut(s) 425, 436, 486, 633
BstV1I GCAGC 3 cut(s) 241, 316, 652
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuRI GGCC 2 cut(s) 598, 652
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 2 cut(s) 166, 632
Cac8I GCNNGC 1 cut(s) 475
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 650
Csp6I GTAC 1 cut(s) 146
CspCI CAANNNNNGTGG 4 cut(s) 28, 63, 541, 576
CviAII CATG 4 cut(s) 19, 28, 356, 722
CviJI RGCY 9 cut(s) 209, 239, 254, 313, 344, 473, 598, 652, 689
CviKI_1 RGCY 9 cut(s) 209, 239, 254, 313, 344, 473, 598, 652, 689
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 210, 752
DpnI GATC 6 cut(s) 5, 23, 82, 195, 529, 544
DpnII GATC 6 cut(s) 3, 21, 80, 193, 527, 542
Eam1104I CTCTTC 3 cut(s) 215, 294, 315
EarI CTCTTC 3 cut(s) 215, 294, 315
Eco130I CCWWGG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 598
Eco31I GGTCTC 1 cut(s) 677
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 4 cut(s) 425, 436, 486, 633
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 4 cut(s) 22, 31, 359, 725
FaiI YATR 8 cut(s) 20, 29, 357, 401, 458, 603, 723, 749
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 4 cut(s) 18, 27, 355, 721
FbaI TGATCA 2 cut(s) 3, 21
Fnu4HI GCNGC 4 cut(s) 255, 330, 666, 681
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 4 cut(s) 255, 330, 666, 681
FspBI CTAG 3 cut(s) 15, 272, 594
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 255, 330, 666, 681
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 598, 652
HhaI GCGC 1 cut(s) 228
Hin1II CATG 4 cut(s) 22, 31, 359, 725
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 3 cut(s) 374, 491, 716
HphI GGTGA 2 cut(s) 190, 452
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 3 cut(s) 201, 268, 379
Hpy188III TCNNGA 1 cut(s) 703
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 8 cut(s) 116, 175, 289, 462, 506, 600, 633, 719
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 7 cut(s) 39, 141, 332, 355, 497, 552, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 147, 251, 310, 335, 686
HpyF3I CTNAG 2 cut(s) 210, 752
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 4 cut(s) 22, 31, 359, 725
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 2 cut(s) 3, 21
Kzo9I GATC 6 cut(s) 3, 21, 80, 193, 527, 542
LguI GCTCTTC 1 cut(s) 294
Lsp1109I GCAGC 3 cut(s) 241, 316, 652
LweI GCATC 2 cut(s) 57, 150
MaeI CTAG 3 cut(s) 15, 272, 594
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 536
MalI GATC 6 cut(s) 5, 23, 82, 195, 529, 544
MboI GATC 6 cut(s) 3, 21, 80, 193, 527, 542
MboII GAAGA 9 cut(s) 3, 72, 181, 232, 301, 304, 311, 332, 383
MfeI CAATTG 2 cut(s) 333, 732
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 53, 333, 393, 732
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 6 cut(s) 216, 303, 316, 334, 458, 706
MseI TTAA 2 cut(s) 165, 420
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 419
MspR9I CCNGG 4 cut(s) 427, 438, 488, 635
MunI CAATTG 2 cut(s) 333, 732
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 4 cut(s) 427, 438, 488, 635
MwoI GCNNNNNNNGC 6 cut(s) 24, 147, 251, 310, 335, 686
NdeII GATC 6 cut(s) 3, 21, 80, 193, 527, 542
NlaIII CATG 4 cut(s) 22, 31, 359, 725
NlaIV GGNNCC 1 cut(s) 651
NmeAIII GCCGAG 1 cut(s) 364
NspI RCATGY 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 734
PaqCI CACCTGC 1 cut(s) 166
PceI AGGCCT 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 294
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 2 cut(s) 491, 716
Pfl23II CGTACG 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 4 cut(s) 256, 331, 667, 682
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 93
Psp6I CCWGG 4 cut(s) 425, 436, 486, 633
PspGI CCWGG 4 cut(s) 425, 436, 486, 633
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 650
PsuI RGATCY 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 165, 420
SatI GCNGC 4 cut(s) 255, 330, 666, 681
Sau3AI GATC 6 cut(s) 3, 21, 80, 193, 527, 542
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 4 cut(s) 427, 438, 488, 635
SduI GDGCHC 1 cut(s) 92
SetI ASST 7 cut(s) 46, 95, 180, 241, 256, 389, 646
SfaNI GCATC 2 cut(s) 57, 150
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 53, 333, 393, 732
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 2 cut(s) 616, 680
SspMI CTAG 3 cut(s) 15, 272, 594
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 4 cut(s) 425, 436, 486, 633
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 1 cut(s) 95
TasI AATT 4 cut(s) 53, 333, 393, 732
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 2 cut(s) 491, 716
Tru1I TTAA 2 cut(s) 165, 420
Tru9I TTAA 2 cut(s) 165, 420
TscAI CASTG 1 cut(s) 90
TseI GCWGC 3 cut(s) 254, 329, 665
TspDTI ATGAA 7 cut(s) 333, 416, 426, 591, 615, 684, 738
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 419
XceI RCATGY 1 cut(s) 359
XspI CTAG 3 cut(s) 15, 272, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.