Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005292

Physical Location & Seq

Genomic Coordinates Reverse (-)

66159712 .. 66161183

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATTTCGAATCCGGGTCTGGTGTACTACGCCTGCATTGCCCAGAAGGAAACGATTCTCGGCGAGATTGCGAAGGAGCCCGGAATCGGAGCCCTAGCTCAGAAATGCATTGCGAAAACCCCACCGCACCACTCCCTGTACACCCACACCGTCAGAAAGCGGACCTACGTATTCTTGGTCGTCGACCCTTTTGTGTTCTTCGGCATTTTCGATCAAGATCTCGATCAGTCCGAGGCGCTTTCGTTCTTGAATCGATTGAGATGCGATTTCGAGAAGGTGAATGGAGTTGGGTCGGTCTTGGATGGAGGAGATTTCGAATCGCATTGTTTTCAAGCTGAGTTTGATTCGATTATGAGGGAGCTGATGGCGTCGGAGATGGATTCGGCGGCGTCGACGCCGGCGAGCCGGAATCTGAGCATGGATTCGAGTAGTAGTAAAGGGAAGAAATTGGTGCTGGCGCCGCTGCTGGGGAACCAGGGGTTGAAGAAGAAGAAGAGATTGTCTGGGGAGGTGAATGGGGAGCTGTGCAAAGATGTGGTGATGGGCACGATGGAGAAGAAGCTGGATGTGGGTGGTGAGGATGGAAGGGATTTCGCAATGCCGGCGCTGAAGAGTGGGGGTTTGCATCCGTGTGAGCGGCAGAAGGCCAAGCAGGTGTGGAGGAGGCATGTGTGGGTGGTGCTGGTGCTGGACTTGTTCGTGTGTGCCGTCTTGTTTGGGGTTTGGTTGTGGGTTTGCAGGGGGTTTAAGTGCATCGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.13

Weight (kDa)

8.04

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27840 AT5G52990
fragaria_vesca	FvH4_7g31440
malus_domestica	MD01G1217900.v1.1 MD07G1287600.v1.1
prunus_persica	Prupe.2G309300_v2.0.a1
pyrus_communis	pycom01g22800 pycom07g26050
rosa_chinensis	RchiOBHm_Chr1g0359031 RchiOBHm_Chr1g0380501 RchiOBHm_Chr2g0122261
rosa_laevigata	RLG00000026291
rosa_multiflora	Rmu_co8212514.1_g000001 Rmu_sc0001733.1_g000002 Rmu_sc0006267.1_g000010 Rmu_sc0006712.1_g000003 Rmu_sc0021603.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279270
rosa_rugosa	Rorug01G0267400 Rorug01G0421300
rosa_samantha	Rh1AG280600 Rh1AG446400 Rh1BG247600 Rh1BG401600 Rh1CG415900 Rh1DG431800 Rh2BG305100 Rh2CG283500
rosa_wichuraiana	Rw1G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	457
AccBSI	CCGCTC	1 cut(s)	637
AccI	GTMKAC	2 cut(s)	183, 392
AciI	CCGC	5 cut(s)	125, 160, 386, 461, 637
AcuI	CTGAAG	1 cut(s)	629
AcyI	GRCGYC	4 cut(s)	368, 389, 395, 458
AfaI	GTAC	2 cut(s)	26, 140
AfiI	CCNNNNNNNGG	2 cut(s)	86, 467
AgsI	TTSAA	3 cut(s)	250, 332, 484
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	5 cut(s)	98, 335, 361, 523, 562
AluI	AGCT	5 cut(s)	98, 335, 361, 523, 562
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	463
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	3 cut(s)	238, 460, 607
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	15, 81
AsuHPI	GGTGA	4 cut(s)	289, 523, 550, 587
AsuII	TTCGAA	2 cut(s)	8, 315
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	2 cut(s)	81, 94
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	6 cut(s)	296, 358, 370, 535, 544, 575
BceAI	ACGGC	1 cut(s)	692
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	1 cut(s)	476
BcnI	CCSGG	2 cut(s)	15, 81
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	3 cut(s)	239, 461, 608
BfuAI	ACCTGC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	4 cut(s)	387, 461, 464, 638
BlsI	GCNGC	4 cut(s)	388, 462, 465, 639
Bme1390I	CCNGG	3 cut(s)	15, 81, 476
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	4 cut(s)	78, 91, 459, 473
BmrFI	CCNGG	3 cut(s)	15, 81, 476
BmsI	GCATC	2 cut(s)	251, 634
Bpu14I	TTCGAA	2 cut(s)	8, 315
BpuMI	CCSGG	2 cut(s)	15, 81
Bsa29I	ATCGAT	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	169
BsaBI	GATNNNNATC	2 cut(s)	216, 222
BsaHI	GRCGYC	4 cut(s)	368, 389, 395, 458
BsaJI	CCNNGG	2 cut(s)	231, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 467
Bse118I	RCCGGY	2 cut(s)	397, 601
Bse3DI	GCAATG	3 cut(s)	36, 108, 603
Bse8I	GATNNNNATC	2 cut(s)	216, 222
BseBI	CCWGG	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	231, 475
BseGI	GGATG	4 cut(s)	307, 571, 586, 625
BseJI	GATNNNNATC	2 cut(s)	216, 222
BseLI	CCNNNNNNNGG	2 cut(s)	86, 467
BseMI	GCAATG	3 cut(s)	36, 108, 603
BseMII	CTCAG	3 cut(s)	113, 327, 404
BseRI	GAGGAG	2 cut(s)	321, 676
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	450
BseYI	CCCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	647
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	253
BsiSI	CCGG	5 cut(s)	14, 81, 398, 406, 602
BslI	CCNNNNNNNGG	2 cut(s)	86, 467
BsnI	GGCC	1 cut(s)	647
Bsp119I	TTCGAA	2 cut(s)	8, 315
Bsp1286I	GDGCHC	3 cut(s)	81, 94, 548
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	211, 217, 223
BspACI	CCGC	5 cut(s)	125, 160, 386, 461, 637
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	3 cut(s)	112, 328, 405
BspDI	ATCGAT	1 cut(s)	253
BspLI	GGNNCC	4 cut(s)	78, 91, 459, 473
BspMI	ACCTGC	1 cut(s)	643
BspT104I	TTCGAA	2 cut(s)	8, 315
BspT107I	GGYRCC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	3 cut(s)	36, 108, 603
BsrFI	RCCGGY	2 cut(s)	397, 601
BsrGI	TGTACA	1 cut(s)	138
BssAI	RCCGGY	2 cut(s)	397, 601
BssECI	CCNNGG	2 cut(s)	231, 475
BssMI	GATC	3 cut(s)	211, 217, 223
BssNI	GRCGYC	4 cut(s)	368, 389, 395, 458
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	151, 761
Bst6I	CTCTTC	2 cut(s)	488, 605
BstACI	GRCGYC	4 cut(s)	368, 389, 395, 458
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	169
BstBI	TTCGAA	2 cut(s)	8, 315
BstC8I	GCNNGC	5 cut(s)	34, 399, 403, 456, 603
BstDEI	CTNAG	3 cut(s)	99, 336, 413
BstF5I	GGATG	4 cut(s)	307, 571, 586, 625
BstH2I	RGCGCY	3 cut(s)	239, 461, 608
BstHHI	GCGC	3 cut(s)	238, 460, 607
BstKTI	GATC	3 cut(s)	214, 220, 226
BstMBI	GATC	3 cut(s)	211, 217, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 460, 602
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	13, 79, 474
BstSLI	GKGCMC	1 cut(s)	548
BstSNI	TACGTA	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	647
BsuTUI	ATCGAT	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	307, 571, 586, 625
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	5 cut(s)	34, 399, 403, 456, 603
CfoI	GCGC	3 cut(s)	238, 460, 607
Cfr10I	RCCGGY	2 cut(s)	397, 601
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	3 cut(s)	357, 378, 403
Csp6I	GTAC	2 cut(s)	25, 139
CviAII	CATG	2 cut(s)	418, 668
CviJI	RGCY	9 cut(s)	79, 92, 98, 335, 361, 405, 523, 562, 647
CviKI_1	RGCY	9 cut(s)	79, 92, 98, 335, 361, 405, 523, 562, 647
CviQI	GTAC	2 cut(s)	25, 139
DdeI	CTNAG	3 cut(s)	99, 336, 413
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	3 cut(s)	213, 219, 225
DpnII	GATC	3 cut(s)	211, 217, 223
Eam1104I	CTCTTC	2 cut(s)	488, 605
EarI	CTCTTC	2 cut(s)	488, 605
Eco105I	TACGTA	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	81, 94
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	81, 94
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
FaeI	CATG	2 cut(s)	421, 671
FaiI	YATR	3 cut(s)	353, 419, 669
FatI	CATG	2 cut(s)	417, 667
FblI	GTMKAC	2 cut(s)	183, 392
Fnu4HI	GCNGC	4 cut(s)	387, 461, 464, 638
FokI	GGATG	4 cut(s)	314, 578, 593, 612
FriOI	GRGCYC	2 cut(s)	81, 94
Fsp4HI	GCNGC	4 cut(s)	387, 461, 464, 638
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	3 cut(s)	237, 459, 606
GluI	GCNGC	4 cut(s)	387, 461, 464, 638
GsaI	CCCAGC	1 cut(s)	470
HaeII	RGCGCY	3 cut(s)	239, 461, 608
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	5 cut(s)	14, 81, 398, 406, 602
HgaI	GACGC	3 cut(s)	357, 378, 403
HhaI	GCGC	3 cut(s)	238, 460, 607
Hin1I	GRCGYC	4 cut(s)	368, 389, 395, 458
Hin1II	CATG	2 cut(s)	421, 671
Hin6I	GCGC	3 cut(s)	236, 458, 605
HinP1I	GCGC	3 cut(s)	236, 458, 605
HincII	GTYRAC	2 cut(s)	184, 393
HindII	GTYRAC	2 cut(s)	184, 393
HinfI	GANTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 409, 422
HpaII	CCGG	5 cut(s)	14, 81, 398, 406, 602
HphI	GGTGA	4 cut(s)	289, 523, 550, 587
Hpy166II	GTNNAC	4 cut(s)	25, 141, 184, 393
Hpy188I	TCNGA	6 cut(s)	89, 102, 155, 232, 373, 414
Hpy188III	TCNNGA	4 cut(s)	215, 221, 247, 271
Hpy8I	GTNNAC	4 cut(s)	25, 141, 184, 393
Hpy99I	CGWCG	4 cut(s)	185, 373, 394, 397
HpyAV	CCTTC	5 cut(s)	40, 67, 268, 579, 637
HpyCH4III	ACNGT	2 cut(s)	151, 761
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	36, 108, 528, 625, 738, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 460, 602
HpyF3I	CTNAG	3 cut(s)	99, 336, 413
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	4 cut(s)	368, 389, 395, 458
Hsp92II	CATG	2 cut(s)	421, 671
HspAI	GCGC	3 cut(s)	236, 458, 605
KasI	GGCGCC	1 cut(s)	457
KroI	GCCGGC	2 cut(s)	397, 601
KroNI	GCCGGC	2 cut(s)	399, 603
Kzo9I	GATC	3 cut(s)	211, 217, 223
LmnI	GCTCC	4 cut(s)	76, 89, 358, 520
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	2 cut(s)	251, 634
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	168
MalI	GATC	3 cut(s)	213, 219, 225
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	3 cut(s)	211, 217, 223
MboII	GAAGA	8 cut(s)	190, 454, 496, 499, 502, 505, 568, 622
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	81, 94, 548
MluCI	AATT	1 cut(s)	446
Mly113I	GGCGCC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	226, 299, 348, 502, 571, 654, 657
Mph1103I	ATGCAT	1 cut(s)	110
MreI	CGCCGGCG	1 cut(s)	397
MroNI	GCCGGC	2 cut(s)	397, 601
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	5 cut(s)	14, 81, 398, 406, 602
MspR9I	CCNGG	3 cut(s)	15, 81, 476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	38, 460, 602
NaeI	GCCGGC	2 cut(s)	399, 603
NarI	GGCGCC	1 cut(s)	458
NciI	CCSGG	2 cut(s)	15, 81
NdeII	GATC	3 cut(s)	211, 217, 223
NgoMIV	GCCGGC	2 cut(s)	397, 601
NlaIII	CATG	2 cut(s)	421, 671
NlaIV	GGNNCC	4 cut(s)	78, 91, 459, 473
NmeAIII	GCCGAG	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	671
NspV	TTCGAA	2 cut(s)	8, 315
PaqCI	CACCTGC	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	5 cut(s)	207, 228, 389, 398, 705
PdiI	GCCGGC	2 cut(s)	399, 603
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 409, 422
PkrI	GCNGC	4 cut(s)	388, 462, 465, 639
PluTI	GGCGCC	1 cut(s)	461
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	78, 91, 459, 473
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	26, 140
RsaNI	GTAC	2 cut(s)	25, 139
RseI	CAYNNNNRTG	1 cut(s)	630
SalI	GTCGAC	2 cut(s)	182, 391
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	4 cut(s)	387, 461, 464, 638
Sau3AI	GATC	3 cut(s)	211, 217, 223
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	15, 81, 476
SduI	GDGCHC	3 cut(s)	81, 94, 548
SfaNI	GCATC	2 cut(s)	251, 634
SfoI	GGCGCC	1 cut(s)	459
SfuI	TTCGAA	2 cut(s)	8, 315
SgrAI	CRCCGGYG	1 cut(s)	397
SgrDI	CGTCGACG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	630
SnaBI	TACGTA	1 cut(s)	169
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	5 cut(s)	125, 160, 386, 461, 637
SspDI	GGCGCC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	13, 79, 474
TaaI	ACNGT	2 cut(s)	151, 761
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	446
TatI	WGTACW	2 cut(s)	24, 138
TauI	GCSGC	3 cut(s)	389, 463, 640
TfiI	GAWTC	9 cut(s)	10, 55, 84, 250, 317, 344, 380, 409, 422
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TseI	GCWGC	1 cut(s)	463
TspGWI	ACGGA	1 cut(s)	618
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	671
XmiI	GTMKAC	2 cut(s)	183, 392
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.