Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

55710407 .. 55711475

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCTGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGCAGACTAGTCTTGAAGTTTCCAATGCTGTTAAGGTTGAGTTTGGAAAGCAGGACAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGCGCAGCAAATCAAGCCATGTCACAGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGTAAGGAACCTTCCTGGTCAGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTGTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCCTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAACGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCATCCGGGACCGGTCGGTATCAATATATCTGTTTCCATTGTTGACGAAGGTAACCTCAGAGGACAACTTTTGGAGATCACAGCGCAGTCTTTATCAGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTAGGGAAATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAATACGGGCTTTCTTAAAGACAATTTGTCCCTTGCATATTACAATGTAGGGGCAGGACAAACACTTGCTCTTTCAATAAGAGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

325

Amino Acids

35.54

Weight (kDa)

9.2

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP21_like_P	PF12230	5 - 55	3.1e-14	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	264 - 320	8.4e-09	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	202, 413
AccB7I	CCANNNNNTGG	2 cut(s)	48, 368
AccI	GTMKAC	1 cut(s)	508
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	247, 593, 610, 626
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	2 cut(s)	244, 611
AcsI	RAATTY	2 cut(s)	689, 825
AcuI	CTGAAG	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	427, 516
AfiI	CCNNNNNNNGG	3 cut(s)	48, 368, 847
AgeI	ACCGGT	1 cut(s)	712
AgsI	TTSAA	3 cut(s)	164, 669, 948
AhdI	GACNNNNNGTC	1 cut(s)	898
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	3 cut(s)	47, 328, 367
AluBI	AGCT	4 cut(s)	55, 503, 658, 844
AluI	AGCT	4 cut(s)	55, 503, 658, 844
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	18, 334
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	3 cut(s)	244, 555, 611
ApeKI	GCWGC	3 cut(s)	208, 251, 500
ApoI	RAATTY	2 cut(s)	689, 825
AsiGI	ACCGGT	1 cut(s)	712
AspLEI	GCGC	2 cut(s)	251, 787
AspS9I	GGNCC	1 cut(s)	710
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	710
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	220, 263, 512
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	3 cut(s)	49, 330, 369
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	18, 334
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	4 cut(s)	156, 393, 504, 831
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	2 cut(s)	202, 413
BisI	GCNGC	5 cut(s)	209, 247, 252, 501, 611
BlsI	GCNGC	5 cut(s)	210, 248, 253, 502, 612
Bme1390I	CCNGG	4 cut(s)	49, 330, 369, 708
Bme18I	GGWCC	1 cut(s)	710
BmeRI	GACNNNNNGTC	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	323, 711
BmrFI	CCNGG	4 cut(s)	49, 330, 369, 708
BmsI	GCATC	2 cut(s)	573, 712
Bpu10I	CCTNAGC	1 cut(s)	639
BpuMI	CCSGG	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 368, 847
Bse118I	RCCGGY	1 cut(s)	712
Bse1I	ACTGG	2 cut(s)	12, 247
BseBI	CCWGG	3 cut(s)	49, 330, 369
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	138, 229, 703
BseLI	CCNNNNNNNGG	3 cut(s)	48, 368, 847
BseMII	CTCAG	3 cut(s)	69, 525, 772
BseNI	ACTGG	2 cut(s)	12, 247
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	220, 263, 512
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	717
BshFI	GGCC	3 cut(s)	246, 557, 613
BshTI	ACCGGT	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	707, 713, 848
BslFI	GGGAC	3 cut(s)	44, 723, 886
BslI	CCNNNNNNNGG	3 cut(s)	48, 368, 847
BsmAI	GTCTC	2 cut(s)	18, 334
BsmFI	GGGAC	3 cut(s)	44, 723, 886
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	246, 557, 613
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	3, 103, 777
BspACI	CCGC	4 cut(s)	247, 593, 610, 626
BspANI	GGCC	3 cut(s)	246, 557, 613
BspCNI	CTCAG	3 cut(s)	70, 526, 771
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	323, 711
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	2 cut(s)	202, 413
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	12, 247
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	3 cut(s)	3, 103, 777
BssNAI	GTATAC	1 cut(s)	509
Bst1107I	GTATAC	1 cut(s)	509
Bst2UI	CCWGG	3 cut(s)	49, 330, 369
Bst4CI	ACNGT	2 cut(s)	412, 805
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	5 cut(s)	78, 141, 534, 639, 758
BstEII	GGTNACC	1 cut(s)	752
BstF5I	GGATG	3 cut(s)	138, 229, 703
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	251, 787
BstKTI	GATC	3 cut(s)	6, 106, 780
BstMAI	GTCTC	2 cut(s)	18, 334
BstMBI	GATC	3 cut(s)	3, 103, 777
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	5 cut(s)	205, 246, 260, 592, 607
BstNI	CCWGG	3 cut(s)	49, 330, 369
BstNSI	RCATGY	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	752
BstSCI	CCNGG	4 cut(s)	47, 328, 367, 706
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	220, 263, 512
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstZ17I	GTATAC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	246, 557, 613
BtsCI	GGATG	3 cut(s)	138, 229, 703
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	19, 240, 442
BveI	ACCTGC	2 cut(s)	202, 413
Cac8I	GCNNGC	1 cut(s)	630
CaiI	CAGNNNCTG	1 cut(s)	803
CfoI	GCGC	2 cut(s)	251, 787
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	710
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	426, 515
CspAI	ACCGGT	1 cut(s)	712
CspCI	CAANNNNNGTGG	2 cut(s)	579, 614
CviAII	CATG	7 cut(s)	28, 85, 230, 265, 547, 605, 629
CviQI	GTAC	2 cut(s)	426, 515
DdeI	CTNAG	5 cut(s)	78, 141, 534, 639, 758
DpnI	GATC	3 cut(s)	5, 105, 779
DpnII	GATC	3 cut(s)	3, 103, 777
DraIII	CACNNNGTG	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	898
EaeI	YGGCCR	2 cut(s)	244, 611
Eam1104I	CTCTTC	1 cut(s)	363
Eam1105I	GACNNNNNGTC	1 cut(s)	898
EarI	CTCTTC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	752
EcoO65I	GGTNACC	1 cut(s)	752
EcoRII	CCWGG	3 cut(s)	47, 328, 367
FaeI	CATG	7 cut(s)	31, 88, 233, 268, 550, 608, 632
FaqI	GGGAC	3 cut(s)	44, 723, 886
FatI	CATG	7 cut(s)	27, 84, 229, 264, 546, 604, 628
FauNDI	CATATG	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	209, 247, 252, 501, 611
FokI	GGATG	3 cut(s)	145, 236, 690
Fsp4HI	GCNGC	5 cut(s)	209, 247, 252, 501, 611
FspBI	CTAG	4 cut(s)	156, 393, 504, 831
GlaI	GCGC	2 cut(s)	250, 786
GluI	GCNGC	5 cut(s)	209, 247, 252, 501, 611
HaeIII	GGCC	3 cut(s)	246, 557, 613
HapII	CCGG	3 cut(s)	707, 713, 848
HhaI	GCGC	2 cut(s)	251, 787
Hin1II	CATG	7 cut(s)	31, 88, 233, 268, 550, 608, 632
Hin6I	GCGC	2 cut(s)	249, 785
HinP1I	GCGC	2 cut(s)	249, 785
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	2 cut(s)	145, 665
HpaII	CCGG	3 cut(s)	707, 713, 848
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	4 cut(s)	307, 509, 540, 745
Hpy188I	TCNGA	5 cut(s)	79, 535, 761, 799, 816
Hpy188III	TCNNGA	2 cut(s)	161, 680
Hpy8I	GTNNAC	4 cut(s)	307, 509, 540, 745
HpyAV	CCTTC	3 cut(s)	335, 354, 743
HpyCH4III	ACNGT	2 cut(s)	412, 805
HpyCH4V	TGCA	6 cut(s)	404, 422, 500, 550, 632, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	205, 246, 260, 592, 607
HpyF3I	CTNAG	5 cut(s)	78, 141, 534, 639, 758
Hsp92II	CATG	7 cut(s)	31, 88, 233, 268, 550, 608, 632
HspAI	GCGC	2 cut(s)	249, 785
Kzo9I	GATC	3 cut(s)	3, 103, 777
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	220, 263, 512
LweI	GCATC	2 cut(s)	573, 712
MabI	ACCWGGT	1 cut(s)	367
MaeI	CTAG	4 cut(s)	156, 393, 504, 831
MaeIII	GTNAC	2 cut(s)	267, 752
MalI	GATC	3 cut(s)	5, 105, 779
MboI	GATC	3 cut(s)	3, 103, 777
MboII	GAAGA	5 cut(s)	344, 350, 380, 695, 978
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	5 cut(s)	452, 689, 825, 863, 895
MseI	TTAA	4 cut(s)	180, 384, 465, 888
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	3 cut(s)	707, 713, 848
MspR9I	CCNGG	4 cut(s)	49, 330, 369, 708
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	3 cut(s)	49, 330, 369
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	205, 246, 260, 592, 607
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	3 cut(s)	3, 103, 777
NlaIII	CATG	7 cut(s)	31, 88, 233, 268, 550, 608, 632
NlaIV	GGNNCC	2 cut(s)	323, 711
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	632
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	145, 665
PflMI	CCANNNNNTGG	2 cut(s)	48, 368
PfoI	TCCNGGA	1 cut(s)	706
PinAI	ACCGGT	1 cut(s)	712
PkrI	GCNGC	5 cut(s)	210, 248, 253, 502, 612
Psp6I	CCWGG	3 cut(s)	47, 328, 367
PspEI	GGTNACC	1 cut(s)	752
PspGI	CCWGG	3 cut(s)	47, 328, 367
PspN4I	GGNNCC	2 cut(s)	323, 711
PspPI	GGNCC	1 cut(s)	710
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	427, 516
RsaNI	GTAC	2 cut(s)	426, 515
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	4 cut(s)	180, 384, 465, 888
SatI	GCNGC	5 cut(s)	209, 247, 252, 501, 611
Sau3AI	GATC	3 cut(s)	3, 103, 777
Sau96I	GGNCC	1 cut(s)	710
ScrFI	CCNGG	4 cut(s)	49, 330, 369, 708
SduI	GDGCHC	1 cut(s)	84
SexAI	ACCWGGT	1 cut(s)	367
SfaNI	GCATC	2 cut(s)	573, 712
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	551
SpeI	ACTAGT	1 cut(s)	155
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	5 cut(s)	452, 689, 825, 863, 895
SsiI	CCGC	4 cut(s)	247, 593, 610, 626
SspMI	CTAG	4 cut(s)	156, 393, 504, 831
StyD4I	CCNGG	4 cut(s)	47, 328, 367, 706
TaaI	ACNGT	2 cut(s)	412, 805
TasI	AATT	5 cut(s)	452, 689, 825, 863, 895
TauI	GCSGC	2 cut(s)	249, 613
TfiI	GAWTC	2 cut(s)	145, 665
Tru1I	TTAA	4 cut(s)	180, 384, 465, 888
Tru9I	TTAA	4 cut(s)	180, 384, 465, 888
TscAI	CASTG	3 cut(s)	19, 247, 442
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	3 cut(s)	208, 251, 500
Tsp45I	GTSAC	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	3 cut(s)	19, 247, 442
Van91I	CCANNNNNTGG	2 cut(s)	48, 368
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	2 cut(s)	689, 825
XceI	RCATGY	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	508
XspI	CTAG	4 cut(s)	156, 393, 504, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.