Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010788.1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Reverse (-)

3081 .. 4418

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010788.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atgatgatgatgatgataagttccatctcgcccttaccagctcctcctacttctgtcaccacacatacaaagcctattggcatcatccctccacctccagaaacagcaaaaatcatcaacaaaactgccaagcacgtttccaagaatggaccgaaatttgagacgaaggtcatcactgaaaagactagactaaatccagatccaaaattcgactttttgaattcctcacatccctaccatgcatattatcagcaccgggtggccgcgttcctttcccagcctgatcagtcttctgaagagccagctccagttgtagatgttaaagctggaacaccaaagcctgattccctctcccagcttagacctgaatgcaaagtgcccgaaccaccagaacccgaagagtttactgttcagctccctcaaggaattagtggagaagaactggatgttatgaagctcacagcccagtttgtagctcggaatgggaaatcgtttttgacagaattgacaagtagagagagtaaaaacccccagttctattttctcaatcataaacatagcttgttcaggttttttacttctctggcggatgcatattcaaaggtgttgatgacagaagaagggatgacagagaaactgaagaagaacgcggcggacatgagcatcgtgctagagcggtgtgtgcatcggctggggtgggagcattatcaaaagcaggcaaagcagaagactgaagatgagattgagcaggaaaggttacaaatggctgcaattgattggcacgataatgtcttggtcgaagtcatagactttgatgatgttgaggatgactatttacctcctccgctgagccttgaagaggttataagtaggagcaaagtcgttatggaagcagatgataatgtcgaggagcatagggatgttgaaatggatttggatgaagaagagatgcagcttgttgaagaaggcatgaaagtaacggaggtggaacaagcaccaatgagaattgtgaacaactggaagagacccgaggagaggatgatccaatccagtgccgaaagagacatgacgatttcccccattacctgggagcttgtccctaacaatgagatgtctgagcacatgaggatttccctcattgatccaagatacagagaacagaaagaaaggatgtttgctaagattcgggagactagtcttgttcttgctcaggacaatgagatctcaagaaacattgtgaaccttgcgagaacccggcctgacatttttggttccacagaggaggaagttagatgccaatgctgtaccatacatgtcttgatgaaagtcttgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

445

Amino Acids

51.2

Weight (kDa)

5.1

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	1086
AccBSI	CCGCTC	1 cut(s)	676
AccII	CGCG	2 cut(s)	266, 650
AciI	CCGC	6 cut(s)	264, 587, 650, 653, 676, 845
AclWI	GGATC	3 cut(s)	194, 1036, 1136
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	155, 206, 220
AcuI	CTGAAG	3 cut(s)	315, 659, 753
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	1306
AfiI	CCNNNNNNNGG	3 cut(s)	859, 1035, 1086
AflIII	ACRYGT	1 cut(s)	1312
AgsI	TTSAA	6 cut(s)	220, 600, 857, 926, 962, 1333
AhlI	ACTAGT	1 cut(s)	1193
AjnI	CCWGG	1 cut(s)	1085
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	4 cut(s)	155, 1018, 1056, 1184
AlwI	GGATC	3 cut(s)	194, 1036, 1136
Ama87I	CYCGRG	1 cut(s)	1028
AoxI	GGCC	2 cut(s)	261, 1256
ApeKI	GCWGC	2 cut(s)	767, 952
ApoI	RAATTY	3 cut(s)	155, 206, 220
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	257, 1255
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	282, 734
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	2 cut(s)	754, 964
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	1087
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	257, 1255
BcoDI	GTCTC	4 cut(s)	155, 1018, 1056, 1184
BcuI	ACTAGT	1 cut(s)	1193
BfaI	CTAG	4 cut(s)	186, 671, 1194, 1336
BglII	AGATCT	1 cut(s)	1221
BisI	GCNGC	4 cut(s)	264, 651, 768, 953
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	4 cut(s)	265, 652, 769, 954
Bme1390I	CCNGG	3 cut(s)	257, 1087, 1255
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	1273
BmrFI	CCNGG	3 cut(s)	257, 1087, 1255
BmrI	ACTGGG	2 cut(s)	460, 526
BmsI	GCATC	6 cut(s)	90, 580, 672, 694, 939, 1283
BmuI	ACTGGG	2 cut(s)	460, 526
BoxI	GACNNNNGTC	1 cut(s)	167
BpiI	GAAGAC	2 cut(s)	282, 734
BpmI	CTGGAG	2 cut(s)	81, 291
Bpu10I	CCTNAGC	1 cut(s)	1209
Bpu1102I	GCTNAGC	1 cut(s)	848
BpuEI	CTTGAG	2 cut(s)	405, 1210
BpuMI	CCSGG	2 cut(s)	257, 1255
BsaI	GGTCTC	1 cut(s)	1018
BsaJI	CCNNGG	2 cut(s)	1029, 1086
Bsc4I	CCNNNNNNNGG	3 cut(s)	859, 1035, 1086
Bse1I	ACTGG	6 cut(s)	308, 447, 466, 532, 1022, 1050
BseBI	CCWGG	1 cut(s)	1087
BseDI	CCNNGG	2 cut(s)	1029, 1086
BseLI	CCNNNNNNNGG	3 cut(s)	859, 1035, 1086
BseMII	CTCAG	3 cut(s)	839, 1107, 1223
BseNI	ACTGG	6 cut(s)	308, 447, 466, 532, 1022, 1050
BseRI	GAGGAG	5 cut(s)	33, 831, 923, 1046, 1295
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	754, 964
BseYI	CCCAGC	3 cut(s)	276, 354, 691
Bsh1236I	CGCG	2 cut(s)	266, 650
BshFI	GGCC	2 cut(s)	263, 1258
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiHKCI	CYCGRG	1 cut(s)	1028
BsiSI	CCGG	2 cut(s)	256, 1255
BslFI	GGGAC	1 cut(s)	1082
BslI	CCNNNNNNNGG	3 cut(s)	859, 1035, 1086
BsmAI	GTCTC	4 cut(s)	155, 1018, 1056, 1184
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	1082
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	263, 1258
Bso31I	GGTCTC	1 cut(s)	1018
BsoBI	CYCGRG	1 cut(s)	1028
Bsp1286I	GDGCHC	2 cut(s)	381, 1122
Bsp143I	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
Bsp1720I	GCTNAGC	1 cut(s)	848
BspACI	CCGC	6 cut(s)	264, 587, 650, 653, 676, 845
BspANI	GGCC	2 cut(s)	263, 1258
BspCNI	CTCAG	3 cut(s)	840, 1108, 1222
BspFNI	CGCG	2 cut(s)	266, 650
BspLI	GGNNCC	1 cut(s)	1273
BspPI	GGATC	3 cut(s)	194, 1036, 1136
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	1018
BsrBI	CCGCTC	1 cut(s)	676
BsrI	ACTGG	6 cut(s)	308, 447, 466, 532, 1022, 1050
BssECI	CCNNGG	2 cut(s)	1029, 1086
BssMI	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	5 cut(s)	291, 393, 852, 939, 1016
BstC8I	GCNNGC	2 cut(s)	303, 717
BstDEI	CTNAG	5 cut(s)	359, 848, 1116, 1179, 1209
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstFNI	CGCG	2 cut(s)	266, 650
BstKTI	GATC	5 cut(s)	202, 286, 1044, 1144, 1224
BstMAI	GTCTC	4 cut(s)	155, 1018, 1056, 1184
BstMBI	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
BstMWI	GCNNNNNNNGC	2 cut(s)	682, 721
BstNI	CCWGG	1 cut(s)	1087
BstNSI	RCATGY	1 cut(s)	1316
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	255, 1085, 1253
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	2 cut(s)	266, 650
BstV1I	GCAGC	2 cut(s)	754, 964
BstV2I	GAAGAC	2 cut(s)	282, 734
BstX2I	RGATCY	2 cut(s)	199, 1221
BstYI	RGATCY	2 cut(s)	199, 1221
BsuRI	GGCC	2 cut(s)	263, 1258
BtsIMutI	CAGTG	2 cut(s)	174, 1057
Cac8I	GCNNGC	2 cut(s)	303, 717
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	1305
CviAII	CATG	6 cut(s)	239, 658, 970, 1066, 1123, 1313
CviQI	GTAC	1 cut(s)	1305
DdeI	CTNAG	5 cut(s)	359, 848, 1116, 1179, 1209
DpnI	GATC	5 cut(s)	201, 285, 1043, 1143, 1223
DpnII	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
DraIII	CACNNNGTG	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	5 cut(s)	291, 393, 852, 939, 1016
EarI	CTCTTC	5 cut(s)	291, 393, 852, 939, 1016
EciI	GGCGGA	2 cut(s)	602, 668
Eco31I	GGTCTC	1 cut(s)	1018
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	3 cut(s)	315, 659, 753
Eco88I	CYCGRG	1 cut(s)	1028
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	1085
EcoT22I	ATGCAT	2 cut(s)	244, 595
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	6 cut(s)	242, 661, 973, 1069, 1126, 1316
FaqI	GGGAC	1 cut(s)	1082
FatI	CATG	6 cut(s)	238, 657, 969, 1065, 1122, 1312
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	264, 651, 768, 953
Fsp4HI	GCNGC	4 cut(s)	264, 651, 768, 953
FspBI	CTAG	4 cut(s)	186, 671, 1194, 1336
GluI	GCNGC	4 cut(s)	264, 651, 768, 953
GsaI	CCCAGC	3 cut(s)	280, 358, 695
GsuI	CTGGAG	2 cut(s)	81, 291
HaeIII	GGCC	2 cut(s)	263, 1258
HapII	CCGG	2 cut(s)	256, 1255
Hin1II	CATG	6 cut(s)	242, 661, 973, 1069, 1126, 1316
HinfI	GANTC	2 cut(s)	344, 1183
HpaII	CCGG	2 cut(s)	256, 1255
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	405, 1012, 1240
Hpy188I	TCNGA	3 cut(s)	295, 480, 1117
Hpy188III	TCNNGA	7 cut(s)	98, 197, 1187, 1211, 1227, 1318, 1330
Hpy8I	GTNNAC	3 cut(s)	405, 1012, 1240
HpyAV	CCTTC	3 cut(s)	160, 614, 959
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	242, 372, 593, 685, 770, 952
HpyF10VI	GCNNNNNNNGC	2 cut(s)	682, 721
HpyF3I	CTNAG	5 cut(s)	359, 848, 1116, 1179, 1209
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	242, 661, 973, 1069, 1126, 1316
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	7 cut(s)	46, 310, 420, 700, 873, 910, 1090
Lsp1109I	GCAGC	2 cut(s)	754, 964
LweI	GCATC	6 cut(s)	90, 580, 672, 694, 939, 1283
MaeI	CTAG	4 cut(s)	186, 671, 1194, 1336
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	55, 756, 976
MalI	GATC	5 cut(s)	201, 285, 1043, 1143, 1223
MbiI	CCGCTC	1 cut(s)	676
MboI	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	2 cut(s)	199, 1221
MhlI	GDGCHC	2 cut(s)	381, 1122
MluCI	AATT	7 cut(s)	155, 206, 220, 426, 503, 771, 1005
Mph1103I	ATGCAT	2 cut(s)	244, 595
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	2 cut(s)	786, 918
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	2 cut(s)	256, 1255
MspR9I	CCNGG	3 cut(s)	257, 1087, 1255
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	1087
MvnI	CGCG	2 cut(s)	266, 650
MwoI	GCNNNNNNNGC	2 cut(s)	682, 721
NciI	CCSGG	2 cut(s)	257, 1255
NdeII	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
NlaIII	CATG	6 cut(s)	242, 661, 973, 1069, 1126, 1316
NlaIV	GGNNCC	1 cut(s)	1273
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	2 cut(s)	244, 595
NspI	RCATGY	1 cut(s)	1316
PciI	ACATGT	1 cut(s)	1312
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	344, 1183
PflMI	CCANNNNNTGG	1 cut(s)	1086
PkrI	GCNGC	4 cut(s)	265, 652, 769, 954
PscI	ACATGT	1 cut(s)	1312
PshAI	GACNNNNGTC	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	866
Psp6I	CCWGG	1 cut(s)	1085
PspFI	CCCAGC	3 cut(s)	276, 354, 691
PspGI	CCWGG	1 cut(s)	1085
PspN4I	GGNNCC	1 cut(s)	1273
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	199, 1221
RsaI	GTAC	1 cut(s)	1306
RsaNI	GTAC	1 cut(s)	1305
RseI	CAYNNNNRTG	2 cut(s)	786, 918
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	264, 651, 768, 953
Sau3AI	GATC	5 cut(s)	199, 283, 1041, 1141, 1221
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	257, 1087, 1255
SduI	GDGCHC	2 cut(s)	381, 1122
SfaNI	GCATC	6 cut(s)	90, 580, 672, 694, 939, 1283
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	786, 918
SmlI	CTYRAG	2 cut(s)	420, 1225
SmoI	CTYRAG	2 cut(s)	420, 1225
SpeI	ACTAGT	1 cut(s)	1193
Sse9I	AATT	7 cut(s)	155, 206, 220, 426, 503, 771, 1005
SsiI	CCGC	6 cut(s)	264, 587, 650, 653, 676, 845
SspMI	CTAG	4 cut(s)	186, 671, 1194, 1336
StyD4I	CCNGG	3 cut(s)	255, 1085, 1253
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	210, 798, 906
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	7 cut(s)	155, 206, 220, 426, 503, 771, 1005
TauI	GCSGC	2 cut(s)	266, 653
TfiI	GAWTC	2 cut(s)	344, 1183
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	181, 1057
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	767, 952
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	467, 954, 986, 1337
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	2 cut(s)	181, 1057
Van91I	CCANNNNNTGG	1 cut(s)	1086
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	3 cut(s)	155, 206, 220
XceI	RCATGY	1 cut(s)	1316
XspI	CTAG	4 cut(s)	186, 671, 1194, 1336
Zsp2I	ATGCAT	2 cut(s)	244, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.