Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

27542528 .. 27545223

Gene Structure 2696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG145600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATGATGATGATAAGCTCCATCTCGCCCTTACCAGCTCCTCCAACTTCTGTCACGACACATACAAAGCCTATTGGCATCATCCCTCCACCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGAAATTTGAGACGAAGGTCATCACTGAAAAGACTAGACTAAATCCAGATCCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGGTGGCCGCGTTCCTTTCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCAGTTGTAGATGTTAAAGCTGGAACACCAAAGCCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCATCAGAACCCGAAGAGTTTACTGTTCATCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGAATTGAGAAGTAGAGAGAGTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGACAGAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAGCGGTGTGTGCATCGGCTGGGGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGAGGTACAATGGTAATGAAAGGTTTACAAAATGGAGTCAAGAGAATCAGGAAAAAAAACAAGCAAAACCAAAGCCTGTTTGATGCTGAGGGGTGGCAAGTGGTACAGTATGGAAGGAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

291

Amino Acids

33.1

Weight (kDa)

9.27

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	36 - 89	8.2e-18	Surp module
Surp	PF01805	147 - 198	4.9e-18	Surp module

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	673
AccII	CGCG	2 cut(s)	263, 647
AciI	CCGC	5 cut(s)	261, 584, 647, 650, 673
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	152, 203, 217
AcuI	CTGAAG	3 cut(s)	312, 656, 750
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	2 cut(s)	757, 855
AgsI	TTSAA	3 cut(s)	217, 565, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	8 cut(s)	18, 38, 302, 323, 355, 454, 473, 558
AluI	AGCT	8 cut(s)	18, 38, 302, 323, 355, 454, 473, 558
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	3 cut(s)	152, 203, 217
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	378
BaeI	ACNNNNGTAYC	2 cut(s)	747, 780
BbsI	GAAGAC	2 cut(s)	279, 731
BbvCI	CCTCAGC	1 cut(s)	837
BccI	CCATC	3 cut(s)	29, 391, 668
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	183, 668
BisI	GCNGC	2 cut(s)	261, 648
BlsI	GCNGC	2 cut(s)	262, 649
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	254
BmrI	ACTGGG	2 cut(s)	457, 523
BmsI	GCATC	4 cut(s)	87, 577, 691, 823
BmuI	ACTGGG	2 cut(s)	457, 523
BoxI	GACNNNNGTC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	279, 731
BpmI	CTGGAG	2 cut(s)	78, 288
Bpu10I	CCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	254
Bse1I	ACTGG	4 cut(s)	305, 444, 463, 529
BseGI	GGATG	5 cut(s)	81, 226, 448, 592, 627
BseMII	CTCAG	1 cut(s)	828
BseNI	ACTGG	4 cut(s)	305, 444, 463, 529
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	378
BseYI	CCCAGC	3 cut(s)	273, 351, 688
Bsh1236I	CGCG	2 cut(s)	263, 647
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	196, 280
BspACI	CCGC	5 cut(s)	261, 584, 647, 650, 673
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	829
BspFNI	CGCG	2 cut(s)	263, 647
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	673
BsrI	ACTGG	4 cut(s)	305, 444, 463, 529
BssMI	GATC	2 cut(s)	196, 280
Bst4CI	ACNGT	2 cut(s)	406, 858
Bst6I	CTCTTC	2 cut(s)	288, 390
BstC8I	GCNNGC	2 cut(s)	300, 714
BstDEI	CTNAG	2 cut(s)	356, 837
BstF5I	GGATG	5 cut(s)	81, 226, 448, 592, 627
BstFNI	CGCG	2 cut(s)	263, 647
BstKTI	GATC	2 cut(s)	199, 283
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	2 cut(s)	196, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	679, 718
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	378
BstUI	CGCG	2 cut(s)	263, 647
BstV2I	GAAGAC	2 cut(s)	279, 731
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	5 cut(s)	81, 226, 448, 592, 627
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	300, 714
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	756, 854
CviAII	CATG	2 cut(s)	236, 655
CviQI	GTAC	2 cut(s)	756, 854
DdeI	CTNAG	2 cut(s)	356, 837
DpnI	GATC	2 cut(s)	198, 282
DpnII	GATC	2 cut(s)	196, 280
DraIII	CACNNNGTG	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	288, 390
EarI	CTCTTC	2 cut(s)	288, 390
EciI	GGCGGA	2 cut(s)	599, 665
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	3 cut(s)	312, 656, 750
EcoRI	GAATTC	1 cut(s)	217
EcoT22I	ATGCAT	2 cut(s)	241, 592
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	239, 658
FaiI	YATR	9 cut(s)	63, 237, 241, 449, 549, 555, 592, 656, 861
FatI	CATG	2 cut(s)	235, 654
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	261, 648
FokI	GGATG	5 cut(s)	68, 213, 455, 599, 634
Fsp4HI	GCNGC	2 cut(s)	261, 648
FspBI	CTAG	2 cut(s)	183, 668
GluI	GCNGC	2 cut(s)	261, 648
GsaI	CCCAGC	3 cut(s)	277, 355, 692
GsuI	CTGGAG	2 cut(s)	78, 288
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	2 cut(s)	239, 658
HinfI	GANTC	3 cut(s)	341, 786, 795
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	402, 776
Hpy188I	TCNGA	4 cut(s)	292, 388, 477, 875
Hpy188III	TCNNGA	5 cut(s)	55, 95, 194, 790, 799
Hpy8I	GTNNAC	2 cut(s)	402, 776
HpyAV	CCTTC	3 cut(s)	157, 611, 858
HpyCH4III	ACNGT	2 cut(s)	406, 858
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	239, 369, 590, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	679, 718
HpyF3I	CTNAG	2 cut(s)	356, 837
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	239, 658
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	196, 280
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	4 cut(s)	23, 43, 307, 697
LweI	GCATC	4 cut(s)	87, 577, 691, 823
MaeI	CTAG	2 cut(s)	183, 668
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	198, 282
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	2 cut(s)	196, 280
MboII	GAAGA	9 cut(s)	279, 305, 407, 446, 626, 649, 652, 736, 743
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	5 cut(s)	152, 203, 217, 423, 500
MlyI	GAGTC	1 cut(s)	795
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	51, 96, 102, 232, 356, 426, 746, 832, 861
Mph1103I	ATGCAT	2 cut(s)	241, 592
MseI	TTAA	1 cut(s)	318
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	371
MvnI	CGCG	2 cut(s)	263, 647
MwoI	GCNNNNNNNGC	2 cut(s)	679, 718
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	196, 280
NlaIII	CATG	2 cut(s)	239, 658
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	2 cut(s)	241, 592
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	341, 795
PkrI	GCNGC	2 cut(s)	262, 649
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
PshAI	GACNNNNGTC	1 cut(s)	164
PspFI	CCCAGC	3 cut(s)	273, 351, 688
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	2 cut(s)	757, 855
RsaNI	GTAC	2 cut(s)	756, 854
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	261, 648
Sau3AI	GATC	2 cut(s)	196, 280
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	795
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	4 cut(s)	87, 577, 691, 823
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	5 cut(s)	152, 203, 217, 423, 500
SsiI	CCGC	5 cut(s)	261, 584, 647, 650, 673
SspMI	CTAG	2 cut(s)	183, 668
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	406, 858
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	5 cut(s)	152, 203, 217, 423, 500
TauI	GCSGC	2 cut(s)	263, 650
TfiI	GAWTC	2 cut(s)	341, 795
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	398, 464, 782
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	3 cut(s)	152, 203, 217
XspI	CTAG	2 cut(s)	183, 668
Zsp2I	ATGCAT	2 cut(s)	241, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.