Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8391555.1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 355

Gene Structure 355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8391555.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 355 bp

tccgcatgcagaacctaagccaaagcgacagaagcttgatgattcaatgcttattccagaagataaatttctggcacagcatccgggaccggtcggtatcaatatatctgtttccattgttgacgaaggtaacctcagaggacaacttttggagatcacagtgcagtctttatcagaaactgttggcagtctgaaagagaaaatttctagggaaatccagcttccggcaaacaaacagaaattgagtggaaatacgggctttcttaaagacaatttgtcccttgcatattacaatgtaggggcaggacaaacacttgctctttcaataagagagcgtggtggaagaaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

117

Amino Acids

12.82

Weight (kDa)

9.53

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	66, 202
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	46, 325
AhdI	GACNNNNNGTC	1 cut(s)	275
AluBI	AGCT	2 cut(s)	35, 221
AluI	AGCT	2 cut(s)	35, 221
AlwNI	CAGNNNCTG	1 cut(s)	180
ApoI	RAATTY	2 cut(s)	66, 202
AsiGI	ACCGGT	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	85
BfaI	CTAG	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	87
BmeRI	GACNNNNNGTC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	89
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	94
BshTI	ACCGGT	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	84, 90, 225
BslFI	GGGAC	2 cut(s)	100, 263
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	100, 263
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	3
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	161, 182
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	16, 135
BstEII	GGTNACC	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	87
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	4 cut(s)	20, 35, 221, 259
CviKI_1	RGCY	4 cut(s)	20, 35, 221, 259
DdeI	CTNAG	2 cut(s)	16, 135
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	275
Eam1105I	GACNNNNNGTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	129
FaeI	CATG	1 cut(s)	9
FaiI	YATR	3 cut(s)	7, 105, 287
FaqI	GGGAC	2 cut(s)	100, 263
FatI	CATG	1 cut(s)	5
FokI	GGATG	1 cut(s)	67
FspBI	CTAG	1 cut(s)	208
HapII	CCGG	3 cut(s)	84, 90, 225
Hin1II	CATG	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	122
HindII	GTYRAC	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	3 cut(s)	84, 90, 225
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	138, 176, 193
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	161, 182
HpyCH4V	TGCA	3 cut(s)	9, 164, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	16, 135
Hsp92II	CATG	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	57, 70, 97, 103, 231, 238, 289
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	72, 355
MluCI	AATT	4 cut(s)	66, 202, 240, 272
MnlI	CCTC	2 cut(s)	132, 144
MseI	TTAA	1 cut(s)	265
MspI	CCGG	3 cut(s)	84, 90, 225
MspR9I	CCNGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	89
PspEI	GGTNACC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	265
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	5 cut(s)	17, 37, 131, 136, 223
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	87
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	4 cut(s)	66, 202, 240, 272
SsiI	CCGC	1 cut(s)	3
SspMI	CTAG	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	161, 182
TasI	AATT	4 cut(s)	66, 202, 240, 272
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	1 cut(s)	166
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	2 cut(s)	66, 202
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.