Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

9396734 .. 9418341

Gene Structure 21608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGATGATGATAAGCTCCATCTCGCCCTTACCTGCTCCTCCTACTTCTGTCACGACACATACGAAGCCTATTGGCATCATCCCTCCACCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGAAATTTGAGACAAAGGTCATCACTGAAAAGACTAGACTAAATCCAGATCCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGCCTGATCAGTCTTCTGAAGAGCCAGCTCCAGTTGTAGATGTTAAAGCTGGAACACCAAAGCCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTTCCCGAACCATCAGAACCCGAAGAGTTTACTGTTCAGCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGAATTGAGAAGTAGAGAGAGTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCACATCCAAAGGTGTTGATGAGAGAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAGCGGTGTGTGCATCGGCTGGGGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCGAAGTCATAGACTGTGATGATGTTGAGGATGACTATTTACCTCCTCCGCTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTCGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGATTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACGGAGTTGGAACAAGCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGGCCTGACATTTTTGGTTCCACAGAGGAGGAAGTTTCCAATGCTGTTAAGGCTGAGTTTGGAAAGCAGGACAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGCGCAGCAAATCAAGCCATGTCACAGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGTAAGGAACCTTCCTGGTCAGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTGTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCTGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCCTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAGCGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTAGCACAGCATCCGGGACCGCACAGCATCCGGGACCGGTCGGCATCAATATATCTGTTTCCATTGTTGACGAAGGTAACCTCAGAGGACAACTTTTGGAGATCACAGTGCAGTCTTTATCAGAAACTGTTGGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

642

Amino Acids

72.41

Weight (kDa)

5.47

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	35 - 84	6.2e-16	Surp module
Surp	PF01805	139 - 186	4e-17	Surp module
PRP21_like_P	PF12230	209 - 408	1.9e-45	Pre-mRNA splicing factor PRP21 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
Acc36I	ACCTGC	3 cut(s)	40, 1297, 1508
AccB7I	CCANNNNNTGG	1 cut(s)	1463
AccBSI	CCGCTC	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	1603
AccII	CGCG	2 cut(s)	623, 1344
AclWI	GGATC	3 cut(s)	188, 1009, 1109
AcoI	YGGCCR	2 cut(s)	1339, 1706
AcsI	RAATTY	4 cut(s)	149, 200, 214, 1784
AcuI	CTGAAG	4 cut(s)	288, 632, 726, 1425
AdeI	CACNNNGTG	1 cut(s)	1466
AfaI	GTAC	2 cut(s)	1522, 1611
AfiI	CCNNNNNNNGG	5 cut(s)	832, 1008, 1058, 1059, 1463
AgeI	ACCGGT	1 cut(s)	1824
AgsI	TTSAA	6 cut(s)	214, 541, 830, 899, 935, 1764
AhlI	ACTAGT	1 cut(s)	1166
AjnI	CCWGG	2 cut(s)	1423, 1462
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
Alw21I	GWGCWC	1 cut(s)	1095
Alw26I	GTCTC	5 cut(s)	149, 991, 1029, 1157, 1429
AlwI	GGATC	3 cut(s)	188, 1009, 1109
AlwNI	CAGNNNCTG	1 cut(s)	1915
Ama87I	CYCGRG	1 cut(s)	1001
AoxI	GGCC	5 cut(s)	251, 1229, 1339, 1650, 1706
ApeKI	GCWGC	5 cut(s)	740, 925, 1303, 1346, 1595
ApoI	RAATTY	4 cut(s)	149, 200, 214, 1784
AsiGI	ACCGGT	1 cut(s)	1824
AspLEI	GCGC	1 cut(s)	1346
AspS9I	GGNCC	3 cut(s)	143, 1805, 1822
AsuC2I	CCSGG	4 cut(s)	1060, 1228, 1803, 1820
AsuHPI	GGTGA	1 cut(s)	1394
AvaI	CYCGRG	1 cut(s)	1001
AvaII	GGWCC	3 cut(s)	143, 1805, 1822
BarI	GAAGNNNNNNTAC	2 cut(s)	1404, 1436
BbsI	GAAGAC	2 cut(s)	255, 707
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	5 cut(s)	727, 937, 1315, 1358, 1607
BccI	CCATC	4 cut(s)	26, 367, 644, 1313
BceAI	ACGGC	1 cut(s)	1460
BciT130I	CCWGG	2 cut(s)	1425, 1464
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	4 cut(s)	1060, 1228, 1803, 1820
BcoDI	GTCTC	5 cut(s)	149, 991, 1029, 1157, 1429
BcuI	ACTAGT	1 cut(s)	1166
BfaI	CTAG	6 cut(s)	180, 644, 1167, 1488, 1599, 1790
BfmI	CTRYAG	1 cut(s)	1593
BfuAI	ACCTGC	3 cut(s)	40, 1297, 1508
BglII	AGATCT	1 cut(s)	1194
BisI	GCNGC	8 cut(s)	624, 741, 926, 1304, 1342, 1347, 1596, 1706
BlpI	GCTNAGC	1 cut(s)	821
BlsI	GCNGC	8 cut(s)	625, 742, 927, 1305, 1343, 1348, 1597, 1707
Bme1390I	CCNGG	6 cut(s)	1060, 1228, 1425, 1464, 1803, 1820
Bme18I	GGWCC	3 cut(s)	143, 1805, 1822
BmeT110I	CYCGRG	1 cut(s)	1001
BmgT120I	GGNCC	3 cut(s)	143, 1805, 1822
BmiI	GGNNCC	4 cut(s)	1246, 1418, 1806, 1823
BmrFI	CCNGG	6 cut(s)	1060, 1228, 1425, 1464, 1803, 1820
BmrI	ACTGGG	2 cut(s)	433, 499
BmsI	GCATC	8 cut(s)	84, 553, 667, 912, 1668, 1807, 1824, 1841
BmuI	ACTGGG	2 cut(s)	433, 499
BoxI	GACNNNNGTC	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	255, 707
BpmI	CTGGAG	2 cut(s)	75, 264
Bpu10I	CCTNAGC	2 cut(s)	1182, 1734
Bpu1102I	GCTNAGC	1 cut(s)	821
BpuEI	CTTGAG	2 cut(s)	378, 1183
BpuMI	CCSGG	4 cut(s)	1060, 1228, 1803, 1820
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	2 cut(s)	991, 1429
BsaJI	CCNNGG	2 cut(s)	1002, 1059
BsaWI	WCCGGW	1 cut(s)	1824
Bsc4I	CCNNNNNNNGG	5 cut(s)	832, 1008, 1058, 1059, 1463
Bse118I	RCCGGY	2 cut(s)	249, 1824
Bse1I	ACTGG	7 cut(s)	281, 420, 439, 505, 995, 1023, 1342
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	1425, 1464
BseDI	CCNNGG	2 cut(s)	1002, 1059
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	5 cut(s)	832, 1008, 1058, 1059, 1463
BseMII	CTCAG	6 cut(s)	812, 1080, 1196, 1272, 1620, 1884
BseNI	ACTGG	7 cut(s)	281, 420, 439, 505, 995, 1023, 1342
BseRI	GAGGAG	6 cut(s)	27, 804, 896, 1019, 1268, 1605
BseXI	GCAGC	5 cut(s)	727, 937, 1315, 1358, 1607
BseYI	CCCAGC	2 cut(s)	327, 664
BsgI	GTGCAG	1 cut(s)	1918
Bsh1236I	CGCG	2 cut(s)	623, 1344
Bsh1285I	CGRYCG	1 cut(s)	1829
BshFI	GGCC	5 cut(s)	253, 1231, 1341, 1652, 1708
BshTI	ACCGGT	1 cut(s)	1824
BsiEI	CGRYCG	1 cut(s)	1829
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiHKCI	CYCGRG	1 cut(s)	1001
BsiSI	CCGG	6 cut(s)	250, 1059, 1228, 1802, 1819, 1825
BslFI	GGGAC	3 cut(s)	1055, 1818, 1835
BslI	CCNNNNNNNGG	5 cut(s)	832, 1008, 1058, 1059, 1463
BsmAI	GTCTC	5 cut(s)	149, 991, 1029, 1157, 1429
BsmFI	GGGAC	3 cut(s)	1055, 1818, 1835
BsmI	GAATGC	2 cut(s)	347, 1375
BsnI	GGCC	5 cut(s)	253, 1231, 1341, 1652, 1708
Bso31I	GGTCTC	2 cut(s)	991, 1429
BsoBI	CYCGRG	1 cut(s)	1001
Bsp1286I	GDGCHC	1 cut(s)	1095
Bsp143I	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
Bsp1720I	GCTNAGC	1 cut(s)	821
BspANI	GGCC	5 cut(s)	253, 1231, 1341, 1652, 1708
BspCNI	CTCAG	6 cut(s)	813, 1081, 1195, 1273, 1621, 1883
BspFNI	CGCG	2 cut(s)	623, 1344
BspLI	GGNNCC	4 cut(s)	1246, 1418, 1806, 1823
BspMAI	CTGCAG	1 cut(s)	1597
BspMI	ACCTGC	3 cut(s)	40, 1297, 1508
BspPI	GGATC	3 cut(s)	188, 1009, 1109
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	2 cut(s)	991, 1429
BsrBI	CCGCTC	1 cut(s)	649
BsrFI	RCCGGY	2 cut(s)	249, 1824
BsrI	ACTGG	7 cut(s)	281, 420, 439, 505, 995, 1023, 1342
BssAI	RCCGGY	2 cut(s)	249, 1824
BssECI	CCNNGG	2 cut(s)	1002, 1059
BssMI	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
BssNAI	GTATAC	1 cut(s)	1604
Bst1107I	GTATAC	1 cut(s)	1604
Bst2UI	CCWGG	2 cut(s)	1425, 1464
Bst4CI	ACNGT	5 cut(s)	382, 785, 1507, 1896, 1917
Bst6I	CTCTTC	6 cut(s)	264, 366, 825, 912, 989, 1458
BstC8I	GCNNGC	3 cut(s)	276, 690, 1725
BstDEI	CTNAG	9 cut(s)	332, 821, 1089, 1152, 1182, 1281, 1629, 1734, 1870
BstEII	GGTNACC	1 cut(s)	1864
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstFNI	CGCG	2 cut(s)	623, 1344
BstHHI	GCGC	1 cut(s)	1346
BstKTI	GATC	6 cut(s)	196, 259, 1017, 1117, 1197, 1892
BstMAI	GTCTC	5 cut(s)	149, 991, 1029, 1157, 1429
BstMBI	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
BstMCI	CGRYCG	1 cut(s)	1829
BstMWI	GCNNNNNNNGC	9 cut(s)	655, 694, 1277, 1300, 1341, 1355, 1687, 1702, 1750
BstNI	CCWGG	2 cut(s)	1425, 1464
BstNSI	RCATGY	1 cut(s)	1727
BstPAI	GACNNNNGTC	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	1864
BstSCI	CCNGG	6 cut(s)	1058, 1226, 1423, 1462, 1801, 1818
BstSFI	CTRYAG	1 cut(s)	1593
BstUI	CGCG	2 cut(s)	623, 1344
BstV1I	GCAGC	5 cut(s)	727, 937, 1315, 1358, 1607
BstV2I	GAAGAC	2 cut(s)	255, 707
BstX2I	RGATCY	2 cut(s)	193, 1194
BstXI	CCANNNNNNTGG	1 cut(s)	1648
BstYI	RGATCY	2 cut(s)	193, 1194
BstZ17I	GTATAC	1 cut(s)	1604
BsuRI	GGCC	5 cut(s)	253, 1231, 1341, 1652, 1708
BtsI	GCAGTG	1 cut(s)	1537
BtsIMutI	CAGTG	5 cut(s)	168, 1030, 1335, 1537, 1901
BveI	ACCTGC	3 cut(s)	40, 1297, 1508
Cac8I	GCNNGC	3 cut(s)	276, 690, 1725
CaiI	CAGNNNCTG	1 cut(s)	1915
CfoI	GCGC	1 cut(s)	1346
Cfr10I	RCCGGY	2 cut(s)	249, 1824
Cfr13I	GGNCC	3 cut(s)	143, 1805, 1822
CsiI	ACCWGGT	1 cut(s)	1462
Csp6I	GTAC	2 cut(s)	1521, 1610
CspAI	ACCGGT	1 cut(s)	1824
CspCI	CAANNNNNGTGG	2 cut(s)	1674, 1709
CviQI	GTAC	2 cut(s)	1521, 1610
DdeI	CTNAG	9 cut(s)	332, 821, 1089, 1152, 1182, 1281, 1629, 1734, 1870
DpnI	GATC	6 cut(s)	195, 258, 1016, 1116, 1196, 1891
DpnII	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
DraIII	CACNNNGTG	1 cut(s)	1466
EaeI	YGGCCR	2 cut(s)	1339, 1706
Eam1104I	CTCTTC	6 cut(s)	264, 366, 825, 912, 989, 1458
EarI	CTCTTC	6 cut(s)	264, 366, 825, 912, 989, 1458
EciI	GGCGGA	2 cut(s)	575, 641
Eco31I	GGTCTC	2 cut(s)	991, 1429
Eco47I	GGWCC	3 cut(s)	143, 1805, 1822
Eco57I	CTGAAG	4 cut(s)	288, 632, 726, 1425
Eco88I	CYCGRG	1 cut(s)	1001
Eco91I	GGTNACC	1 cut(s)	1864
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO65I	GGTNACC	1 cut(s)	1864
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	1423, 1462
EcoT22I	ATGCAT	1 cut(s)	238
FaqI	GGGAC	3 cut(s)	1055, 1818, 1835
FauNDI	CATATG	1 cut(s)	1313
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	1603
Fnu4HI	GCNGC	8 cut(s)	624, 741, 926, 1304, 1342, 1347, 1596, 1706
Fsp4HI	GCNGC	8 cut(s)	624, 741, 926, 1304, 1342, 1347, 1596, 1706
FspBI	CTAG	6 cut(s)	180, 644, 1167, 1488, 1599, 1790
GlaI	GCGC	1 cut(s)	1345
GluI	GCNGC	8 cut(s)	624, 741, 926, 1304, 1342, 1347, 1596, 1706
GsaI	CCCAGC	2 cut(s)	331, 668
GsuI	CTGGAG	2 cut(s)	75, 264
HaeIII	GGCC	5 cut(s)	253, 1231, 1341, 1652, 1708
HapII	CCGG	6 cut(s)	250, 1059, 1228, 1802, 1819, 1825
HhaI	GCGC	1 cut(s)	1346
Hin6I	GCGC	1 cut(s)	1344
HinP1I	GCGC	1 cut(s)	1344
HincII	GTYRAC	1 cut(s)	1857
HindII	GTYRAC	1 cut(s)	1857
HindIII	AAGCTT	1 cut(s)	1751
HinfI	GANTC	3 cut(s)	317, 1156, 1760
HpaII	CCGG	6 cut(s)	250, 1059, 1228, 1802, 1819, 1825
HphI	GGTGA	1 cut(s)	1394
Hpy166II	GTNNAC	6 cut(s)	378, 1213, 1402, 1604, 1635, 1857
Hpy188I	TCNGA	7 cut(s)	268, 364, 453, 1090, 1630, 1873, 1911
Hpy188III	TCNNGA	8 cut(s)	52, 92, 191, 353, 1160, 1184, 1200, 1775
Hpy8I	GTNNAC	6 cut(s)	378, 1213, 1402, 1604, 1635, 1857
HpyAV	CCTTC	5 cut(s)	587, 932, 1430, 1449, 1855
HpyCH4III	ACNGT	5 cut(s)	382, 785, 1507, 1896, 1917
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	9 cut(s)	655, 694, 1277, 1300, 1341, 1355, 1687, 1702, 1750
HpyF3I	CTNAG	9 cut(s)	332, 821, 1089, 1152, 1182, 1281, 1629, 1734, 1870
HpySE526I	ACGT	1 cut(s)	129
HspAI	GCGC	1 cut(s)	1344
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	8 cut(s)	20, 40, 283, 393, 673, 846, 883, 1063
Lsp1109I	GCAGC	5 cut(s)	727, 937, 1315, 1358, 1607
LweI	GCATC	8 cut(s)	84, 553, 667, 912, 1668, 1807, 1824, 1841
MabI	ACCWGGT	1 cut(s)	1462
MaeI	CTAG	6 cut(s)	180, 644, 1167, 1488, 1599, 1790
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	5 cut(s)	49, 729, 949, 1362, 1864
MalI	GATC	6 cut(s)	195, 258, 1016, 1116, 1196, 1891
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	2 cut(s)	193, 1194
MhlI	GDGCHC	1 cut(s)	1095
MluCI	AATT	9 cut(s)	149, 200, 214, 399, 476, 744, 978, 1547, 1784
MmeI	TCCRAC	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	4 cut(s)	294, 1275, 1479, 1560
MslI	CAYNNNNRTG	3 cut(s)	759, 891, 1646
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	6 cut(s)	250, 1059, 1228, 1802, 1819, 1825
MspR9I	CCNGG	6 cut(s)	1060, 1228, 1425, 1464, 1803, 1820
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	347, 1375
MvaI	CCWGG	2 cut(s)	1425, 1464
MvnI	CGCG	2 cut(s)	623, 1344
MwoI	GCNNNNNNNGC	9 cut(s)	655, 694, 1277, 1300, 1341, 1355, 1687, 1702, 1750
NciI	CCSGG	4 cut(s)	1060, 1228, 1803, 1820
NdeI	CATATG	1 cut(s)	1313
NdeII	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
NlaIV	GGNNCC	4 cut(s)	1246, 1418, 1806, 1823
NmuCI	GTSAC	2 cut(s)	49, 1362
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	1727
PaeI	GCATGC	1 cut(s)	1727
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	2 cut(s)	347, 1375
PfeI	GAWTC	3 cut(s)	317, 1156, 1760
PflMI	CCANNNNNTGG	1 cut(s)	1463
PfoI	TCCNGGA	2 cut(s)	1801, 1818
PinAI	ACCGGT	1 cut(s)	1824
PkrI	GCNGC	8 cut(s)	625, 742, 927, 1305, 1343, 1348, 1597, 1707
PshAI	GACNNNNGTC	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	839
Psp6I	CCWGG	2 cut(s)	1423, 1462
PspEI	GGTNACC	1 cut(s)	1864
PspFI	CCCAGC	2 cut(s)	327, 664
PspGI	CCWGG	2 cut(s)	1423, 1462
PspN4I	GGNNCC	4 cut(s)	1246, 1418, 1806, 1823
PspPI	GGNCC	3 cut(s)	143, 1805, 1822
PstI	CTGCAG	1 cut(s)	1597
PstNI	CAGNNNCTG	1 cut(s)	1915
PsuI	RGATCY	2 cut(s)	193, 1194
RsaI	GTAC	2 cut(s)	1522, 1611
RsaNI	GTAC	2 cut(s)	1521, 1610
RseI	CAYNNNNRTG	3 cut(s)	759, 891, 1646
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	294, 1275, 1479, 1560
SatI	GCNGC	8 cut(s)	624, 741, 926, 1304, 1342, 1347, 1596, 1706
Sau3AI	GATC	6 cut(s)	193, 256, 1014, 1114, 1194, 1889
Sau96I	GGNCC	3 cut(s)	143, 1805, 1822
ScrFI	CCNGG	6 cut(s)	1060, 1228, 1425, 1464, 1803, 1820
SduI	GDGCHC	1 cut(s)	1095
SexAI	ACCWGGT	1 cut(s)	1462
SfaNI	GCATC	8 cut(s)	84, 553, 667, 912, 1668, 1807, 1824, 1841
SfcI	CTRYAG	1 cut(s)	1593
SinI	GGWCC	3 cut(s)	143, 1805, 1822
SmiMI	CAYNNNNRTG	3 cut(s)	759, 891, 1646
SmlI	CTYRAG	2 cut(s)	393, 1198
SmoI	CTYRAG	2 cut(s)	393, 1198
SpeI	ACTAGT	1 cut(s)	1166
SphI	GCATGC	1 cut(s)	1727
Sse9I	AATT	9 cut(s)	149, 200, 214, 399, 476, 744, 978, 1547, 1784
SspMI	CTAG	6 cut(s)	180, 644, 1167, 1488, 1599, 1790
StyD4I	CCNGG	6 cut(s)	1058, 1226, 1423, 1462, 1801, 1818
TaaI	ACNGT	5 cut(s)	382, 785, 1507, 1896, 1917
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	204, 771, 879
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	9 cut(s)	149, 200, 214, 399, 476, 744, 978, 1547, 1784
TauI	GCSGC	3 cut(s)	626, 1344, 1708
TfiI	GAWTC	3 cut(s)	317, 1156, 1760
Tru1I	TTAA	4 cut(s)	294, 1275, 1479, 1560
Tru9I	TTAA	4 cut(s)	294, 1275, 1479, 1560
TscAI	CASTG	5 cut(s)	175, 1030, 1342, 1537, 1901
TseFI	GTSAC	2 cut(s)	49, 1362
TseI	GCWGC	5 cut(s)	740, 925, 1303, 1346, 1595
Tsp45I	GTSAC	2 cut(s)	49, 1362
TspDTI	ATGAA	3 cut(s)	440, 927, 959
TspGWI	ACGGA	1 cut(s)	968
TspRI	CASTG	5 cut(s)	175, 1030, 1342, 1537, 1901
Van91I	CCANNNNNTGG	1 cut(s)	1463
VpaK11BI	GGWCC	3 cut(s)	143, 1805, 1822
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	4 cut(s)	149, 200, 214, 1784
XceI	RCATGY	1 cut(s)	1727
XmiI	GTMKAC	1 cut(s)	1603
XspI	CTAG	6 cut(s)	180, 644, 1167, 1488, 1599, 1790
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.