Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Reverse (-)

25407360 .. 25409447

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGATAAGCTCCATCTCGCCCTTACCAGCTCCTCCTACTTCTGTCACGACACATACAAAGCCTATTGGCATCATCCCTCCACCTCCAGAAACAGCAAATATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGAAATTTGAGACGAAGGTCATCACTGAAAAGACTAGACTAAATCCAGATCCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTACCAGCACCGGGTGGCCGCGTTCCTTTCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCAGTTGTAGATGTTAAAGCTGGAACACCAAAGCCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCATCAGAACCCGAAGAGTTTACTGTTCAGCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGAATTGAGAAGTAGAGAGAGTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGACAGAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAGCGGTGTGTGCATCGGCTGGGGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCGAAGTCATAGACTTTGATGATGTTGAGGATGACTATTTACCTCCTCCGCTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTCGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGATTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACGGAGGTGGAACAAGCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGGCCTGACATTTTTGGTTCCACAGAGGAGGAAGTTTCCAATGCTGTTAAGGCTGAGTTTGGAAAGCAGGACAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGCGCAGCAAATCAAGCCATGTCACAGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGTAAGGAACCTTCCTGGTCAGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTGTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCCTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAGCGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCATCCGGGACCGATCACAGTGCAGTCTTTATCAGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTAGGGAAATCCAGCGTCCGGCAAACAAACAGAAATTGAGTGGAAATACGGGCTTTCTTAAAGACAATTTGTCCCTTGCATATTACAATGTAGGGGCAGGACAAACACTTGCTCTTTCAATAAGAGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

674

Amino Acids

75.48

Weight (kDa)

5.56

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	33 - 86	2.5e-17	Surp module
Surp	PF01805	144 - 195	1.6e-17	Surp module
PRP21_like_P	PF12230	214 - 413	2.7e-47	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	614 - 669	8.4e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
Acc36I	ACCTGC	2 cut(s)	1312, 1523
AccB7I	CCANNNNNTGG	1 cut(s)	1478
AccBSI	CCGCTC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	1618
AccII	CGCG	3 cut(s)	254, 638, 1359
AclWI	GGATC	3 cut(s)	182, 1024, 1124
AcoI	YGGCCR	3 cut(s)	249, 1354, 1721
AcsI	RAATTY	5 cut(s)	143, 194, 208, 1799, 1872
AcuI	CTGAAG	4 cut(s)	303, 647, 741, 1440
AdeI	CACNNNGTG	2 cut(s)	247, 1481
AfaI	GTAC	2 cut(s)	1537, 1626
AfiI	CCNNNNNNNGG	7 cut(s)	244, 847, 1023, 1073, 1074, 1478, 1894
AgsI	TTSAA	8 cut(s)	208, 556, 588, 845, 914, 950, 1779, 1995
AhdI	GACNNNNNGTC	1 cut(s)	1945
AhlI	ACTAGT	1 cut(s)	1181
AjnI	CCWGG	2 cut(s)	1438, 1477
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
Alw21I	GWGCWC	1 cut(s)	1110
Alw26I	GTCTC	5 cut(s)	143, 1006, 1044, 1172, 1444
AlwI	GGATC	3 cut(s)	182, 1024, 1124
AlwNI	CAGNNNCTG	1 cut(s)	1850
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	5 cut(s)	249, 1244, 1354, 1665, 1721
ApeKI	GCWGC	5 cut(s)	755, 940, 1318, 1361, 1610
ApoI	RAATTY	5 cut(s)	143, 194, 208, 1799, 1872
AspLEI	GCGC	1 cut(s)	1361
AspS9I	GGNCC	2 cut(s)	137, 1820
AsuC2I	CCSGG	4 cut(s)	245, 1075, 1243, 1818
AsuHPI	GGTGA	1 cut(s)	1409
AvaI	CYCGRG	1 cut(s)	1016
AvaII	GGWCC	2 cut(s)	137, 1820
BaeGI	GKGCMC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	1419, 1451
BbsI	GAAGAC	2 cut(s)	270, 722
Bbv12I	GWGCWC	1 cut(s)	1110
BbvI	GCAGC	5 cut(s)	742, 952, 1330, 1373, 1622
BccI	CCATC	4 cut(s)	20, 382, 659, 1328
BceAI	ACGGC	1 cut(s)	1475
BcgI	CGANNNNNNTGC	2 cut(s)	1813, 1847
BciT130I	CCWGG	2 cut(s)	1440, 1479
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	4 cut(s)	245, 1075, 1243, 1818
BcoDI	GTCTC	5 cut(s)	143, 1006, 1044, 1172, 1444
BcuI	ACTAGT	1 cut(s)	1181
BfaI	CTAG	6 cut(s)	174, 659, 1182, 1503, 1614, 1878
BfmI	CTRYAG	1 cut(s)	1608
BfuAI	ACCTGC	2 cut(s)	1312, 1523
BglII	AGATCT	1 cut(s)	1209
BisI	GCNGC	9 cut(s)	252, 639, 756, 941, 1319, 1357, 1362, 1611, 1721
BlpI	GCTNAGC	1 cut(s)	836
BlsI	GCNGC	9 cut(s)	253, 640, 757, 942, 1320, 1358, 1363, 1612, 1722
Bme1390I	CCNGG	6 cut(s)	245, 1075, 1243, 1440, 1479, 1818
Bme18I	GGWCC	2 cut(s)	137, 1820
BmeRI	GACNNNNNGTC	1 cut(s)	1945
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	2 cut(s)	137, 1820
BmiI	GGNNCC	3 cut(s)	1261, 1433, 1821
BmrFI	CCNGG	6 cut(s)	245, 1075, 1243, 1440, 1479, 1818
BmrI	ACTGGG	2 cut(s)	448, 514
BmsI	GCATC	6 cut(s)	78, 568, 682, 927, 1683, 1822
BmuI	ACTGGG	2 cut(s)	448, 514
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	270, 722
BpmI	CTGGAG	2 cut(s)	69, 279
Bpu10I	CCTNAGC	2 cut(s)	1197, 1749
Bpu1102I	GCTNAGC	1 cut(s)	836
BpuEI	CTTGAG	2 cut(s)	393, 1198
BpuMI	CCSGG	4 cut(s)	245, 1075, 1243, 1818
BsaI	GGTCTC	2 cut(s)	1006, 1444
BsaJI	CCNNGG	2 cut(s)	1017, 1074
BsaXI	ACNNNNNCTCC	2 cut(s)	1573, 1603
Bsc4I	CCNNNNNNNGG	7 cut(s)	244, 847, 1023, 1073, 1074, 1478, 1894
Bse1I	ACTGG	7 cut(s)	296, 435, 454, 520, 1010, 1038, 1357
BseBI	CCWGG	2 cut(s)	1440, 1479
BseDI	CCNNGG	2 cut(s)	1017, 1074
BseLI	CCNNNNNNNGG	7 cut(s)	244, 847, 1023, 1073, 1074, 1478, 1894
BseMII	CTCAG	5 cut(s)	827, 1095, 1211, 1287, 1635
BseNI	ACTGG	7 cut(s)	296, 435, 454, 520, 1010, 1038, 1357
BseRI	GAGGAG	6 cut(s)	21, 819, 911, 1034, 1283, 1620
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	5 cut(s)	742, 952, 1330, 1373, 1622
BseYI	CCCAGC	3 cut(s)	264, 342, 679
BsgI	GTGCAG	1 cut(s)	1853
Bsh1236I	CGCG	3 cut(s)	254, 638, 1359
BshFI	GGCC	5 cut(s)	251, 1246, 1356, 1667, 1723
BsiHKAI	GWGCWC	1 cut(s)	1110
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiSI	CCGG	5 cut(s)	244, 1074, 1243, 1817, 1895
BslFI	GGGAC	3 cut(s)	1070, 1833, 1933
BslI	CCNNNNNNNGG	7 cut(s)	244, 847, 1023, 1073, 1074, 1478, 1894
BsmAI	GTCTC	5 cut(s)	143, 1006, 1044, 1172, 1444
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	3 cut(s)	1070, 1833, 1933
BsmI	GAATGC	2 cut(s)	362, 1390
BsnI	GGCC	5 cut(s)	251, 1246, 1356, 1667, 1723
Bso31I	GGTCTC	2 cut(s)	1006, 1444
BsoBI	CYCGRG	1 cut(s)	1016
Bsp1286I	GDGCHC	2 cut(s)	369, 1110
Bsp143I	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
Bsp1720I	GCTNAGC	1 cut(s)	836
BspANI	GGCC	5 cut(s)	251, 1246, 1356, 1667, 1723
BspCNI	CTCAG	5 cut(s)	828, 1096, 1210, 1288, 1636
BspFNI	CGCG	3 cut(s)	254, 638, 1359
BspLI	GGNNCC	3 cut(s)	1261, 1433, 1821
BspMAI	CTGCAG	1 cut(s)	1612
BspMI	ACCTGC	2 cut(s)	1312, 1523
BspPI	GGATC	3 cut(s)	182, 1024, 1124
BspQI	GCTCTTC	1 cut(s)	279
BspTNI	GGTCTC	2 cut(s)	1006, 1444
BsrBI	CCGCTC	1 cut(s)	664
BsrI	ACTGG	7 cut(s)	296, 435, 454, 520, 1010, 1038, 1357
BssECI	CCNNGG	2 cut(s)	1017, 1074
BssMI	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
BssNAI	GTATAC	1 cut(s)	1619
Bst1107I	GTATAC	1 cut(s)	1619
Bst2UI	CCWGG	2 cut(s)	1440, 1479
Bst4CI	ACNGT	4 cut(s)	397, 1522, 1831, 1852
Bst6I	CTCTTC	6 cut(s)	279, 381, 840, 927, 1004, 1473
BstC8I	GCNNGC	3 cut(s)	291, 705, 1740
BstDEI	CTNAG	8 cut(s)	347, 836, 1104, 1167, 1197, 1296, 1644, 1749
BstENI	CCTNNNNNAGG	1 cut(s)	845
BstFNI	CGCG	3 cut(s)	254, 638, 1359
BstHHI	GCGC	1 cut(s)	1361
BstKTI	GATC	6 cut(s)	190, 274, 1032, 1132, 1212, 1827
BstMAI	GTCTC	5 cut(s)	143, 1006, 1044, 1172, 1444
BstMBI	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
BstMWI	GCNNNNNNNGC	9 cut(s)	670, 709, 1292, 1315, 1356, 1370, 1702, 1717, 1765
BstNI	CCWGG	2 cut(s)	1440, 1479
BstNSI	RCATGY	1 cut(s)	1742
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	6 cut(s)	243, 1073, 1241, 1438, 1477, 1816
BstSFI	CTRYAG	1 cut(s)	1608
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	3 cut(s)	254, 638, 1359
BstV1I	GCAGC	5 cut(s)	742, 952, 1330, 1373, 1622
BstV2I	GAAGAC	2 cut(s)	270, 722
BstX2I	RGATCY	2 cut(s)	187, 1209
BstXI	CCANNNNNNTGG	1 cut(s)	1663
BstYI	RGATCY	2 cut(s)	187, 1209
BstZ17I	GTATAC	1 cut(s)	1619
BsuRI	GGCC	5 cut(s)	251, 1246, 1356, 1667, 1723
BtsI	GCAGTG	1 cut(s)	1552
BtsIMutI	CAGTG	5 cut(s)	162, 1045, 1350, 1552, 1836
BveI	ACCTGC	2 cut(s)	1312, 1523
Cac8I	GCNNGC	3 cut(s)	291, 705, 1740
CaiI	CAGNNNCTG	1 cut(s)	1850
CfoI	GCGC	1 cut(s)	1361
Cfr13I	GGNCC	2 cut(s)	137, 1820
CseI	GACGC	1 cut(s)	1880
CsiI	ACCWGGT	1 cut(s)	1477
Csp6I	GTAC	2 cut(s)	1536, 1625
CspCI	CAANNNNNGTGG	2 cut(s)	1689, 1724
CviQI	GTAC	2 cut(s)	1536, 1625
DdeI	CTNAG	8 cut(s)	347, 836, 1104, 1167, 1197, 1296, 1644, 1749
DpnI	GATC	6 cut(s)	189, 273, 1031, 1131, 1211, 1826
DpnII	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
DraIII	CACNNNGTG	2 cut(s)	247, 1481
DriI	GACNNNNNGTC	1 cut(s)	1945
EaeI	YGGCCR	3 cut(s)	249, 1354, 1721
Eam1104I	CTCTTC	6 cut(s)	279, 381, 840, 927, 1004, 1473
Eam1105I	GACNNNNNGTC	1 cut(s)	1945
EarI	CTCTTC	6 cut(s)	279, 381, 840, 927, 1004, 1473
EciI	GGCGGA	2 cut(s)	590, 656
Eco31I	GGTCTC	2 cut(s)	1006, 1444
Eco47I	GGWCC	2 cut(s)	137, 1820
Eco57I	CTGAAG	4 cut(s)	303, 647, 741, 1440
Eco88I	CYCGRG	1 cut(s)	1016
EcoNI	CCTNNNNNAGG	1 cut(s)	845
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	1438, 1477
EcoT22I	ATGCAT	2 cut(s)	232, 583
Esp3I	CGTCTC	1 cut(s)	143
FaqI	GGGAC	3 cut(s)	1070, 1833, 1933
FauNDI	CATATG	1 cut(s)	1328
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	1618
Fnu4HI	GCNGC	9 cut(s)	252, 639, 756, 941, 1319, 1357, 1362, 1611, 1721
Fsp4HI	GCNGC	9 cut(s)	252, 639, 756, 941, 1319, 1357, 1362, 1611, 1721
FspBI	CTAG	6 cut(s)	174, 659, 1182, 1503, 1614, 1878
GlaI	GCGC	1 cut(s)	1360
GluI	GCNGC	9 cut(s)	252, 639, 756, 941, 1319, 1357, 1362, 1611, 1721
GsaI	CCCAGC	3 cut(s)	268, 346, 683
GsuI	CTGGAG	2 cut(s)	69, 279
HaeIII	GGCC	5 cut(s)	251, 1246, 1356, 1667, 1723
HapII	CCGG	5 cut(s)	244, 1074, 1243, 1817, 1895
HgaI	GACGC	1 cut(s)	1880
HhaI	GCGC	1 cut(s)	1361
Hin6I	GCGC	1 cut(s)	1359
HinP1I	GCGC	1 cut(s)	1359
HindIII	AAGCTT	1 cut(s)	1766
HinfI	GANTC	3 cut(s)	332, 1171, 1775
HpaII	CCGG	5 cut(s)	244, 1074, 1243, 1817, 1895
HphI	GGTGA	1 cut(s)	1409
Hpy166II	GTNNAC	5 cut(s)	393, 1228, 1417, 1619, 1650
Hpy188I	TCNGA	7 cut(s)	283, 379, 468, 1105, 1645, 1846, 1863
Hpy188III	TCNNGA	7 cut(s)	46, 86, 185, 1175, 1199, 1215, 1790
Hpy8I	GTNNAC	5 cut(s)	393, 1228, 1417, 1619, 1650
HpyAV	CCTTC	5 cut(s)	148, 602, 947, 1445, 1464
HpyCH4III	ACNGT	4 cut(s)	397, 1522, 1831, 1852
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	9 cut(s)	670, 709, 1292, 1315, 1356, 1370, 1702, 1717, 1765
HpyF3I	CTNAG	8 cut(s)	347, 836, 1104, 1167, 1197, 1296, 1644, 1749
HpySE526I	ACGT	1 cut(s)	123
HspAI	GCGC	1 cut(s)	1359
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	8 cut(s)	14, 34, 298, 408, 688, 861, 898, 1078
Lsp1109I	GCAGC	5 cut(s)	742, 952, 1330, 1373, 1622
LweI	GCATC	6 cut(s)	78, 568, 682, 927, 1683, 1822
MabI	ACCWGGT	1 cut(s)	1477
MaeI	CTAG	6 cut(s)	174, 659, 1182, 1503, 1614, 1878
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	4 cut(s)	43, 744, 964, 1377
MalI	GATC	6 cut(s)	189, 273, 1031, 1131, 1211, 1826
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	2 cut(s)	187, 1209
MhlI	GDGCHC	2 cut(s)	369, 1110
Mph1103I	ATGCAT	2 cut(s)	232, 583
MseI	TTAA	5 cut(s)	309, 1290, 1494, 1575, 1935
MslI	CAYNNNNRTG	3 cut(s)	774, 906, 1661
MspA1I	CMGCKG	1 cut(s)	835
MspI	CCGG	5 cut(s)	244, 1074, 1243, 1817, 1895
MspR9I	CCNGG	6 cut(s)	245, 1075, 1243, 1440, 1479, 1818
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	2 cut(s)	362, 1390
MvaI	CCWGG	2 cut(s)	1440, 1479
MvnI	CGCG	3 cut(s)	254, 638, 1359
MwoI	GCNNNNNNNGC	9 cut(s)	670, 709, 1292, 1315, 1356, 1370, 1702, 1717, 1765
NciI	CCSGG	4 cut(s)	245, 1075, 1243, 1818
NdeI	CATATG	1 cut(s)	1328
NdeII	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
NlaIV	GGNNCC	3 cut(s)	1261, 1433, 1821
NmuCI	GTSAC	2 cut(s)	43, 1377
NsiI	ATGCAT	2 cut(s)	232, 583
NspI	RCATGY	1 cut(s)	1742
PaeI	GCATGC	1 cut(s)	1742
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	2 cut(s)	362, 1390
PfeI	GAWTC	3 cut(s)	332, 1171, 1775
PflMI	CCANNNNNTGG	1 cut(s)	1478
PfoI	TCCNGGA	1 cut(s)	1816
PkrI	GCNGC	9 cut(s)	253, 640, 757, 942, 1320, 1358, 1363, 1612, 1722
PshAI	GACNNNNGTC	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	1438, 1477
PspFI	CCCAGC	3 cut(s)	264, 342, 679
PspGI	CCWGG	2 cut(s)	1438, 1477
PspN4I	GGNNCC	3 cut(s)	1261, 1433, 1821
PspPI	GGNCC	2 cut(s)	137, 1820
PstI	CTGCAG	1 cut(s)	1612
PstNI	CAGNNNCTG	1 cut(s)	1850
PsuI	RGATCY	2 cut(s)	187, 1209
RsaI	GTAC	2 cut(s)	1537, 1626
RsaNI	GTAC	2 cut(s)	1536, 1625
RseI	CAYNNNNRTG	3 cut(s)	774, 906, 1661
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	5 cut(s)	309, 1290, 1494, 1575, 1935
SatI	GCNGC	9 cut(s)	252, 639, 756, 941, 1319, 1357, 1362, 1611, 1721
Sau3AI	GATC	6 cut(s)	187, 271, 1029, 1129, 1209, 1824
Sau96I	GGNCC	2 cut(s)	137, 1820
ScrFI	CCNGG	6 cut(s)	245, 1075, 1243, 1440, 1479, 1818
SduI	GDGCHC	2 cut(s)	369, 1110
SexAI	ACCWGGT	1 cut(s)	1477
SfaNI	GCATC	6 cut(s)	78, 568, 682, 927, 1683, 1822
SfcI	CTRYAG	1 cut(s)	1608
SinI	GGWCC	2 cut(s)	137, 1820
SmiMI	CAYNNNNRTG	3 cut(s)	774, 906, 1661
SmlI	CTYRAG	2 cut(s)	408, 1213
SmoI	CTYRAG	2 cut(s)	408, 1213
SpeI	ACTAGT	1 cut(s)	1181
SphI	GCATGC	1 cut(s)	1742
SspMI	CTAG	6 cut(s)	174, 659, 1182, 1503, 1614, 1878
StyD4I	CCNGG	6 cut(s)	243, 1073, 1241, 1438, 1477, 1816
TaaI	ACNGT	4 cut(s)	397, 1522, 1831, 1852
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	198, 786, 894
TaqII	GACCGA	2 cut(s)	154, 1837
TauI	GCSGC	4 cut(s)	254, 641, 1359, 1723
TfiI	GAWTC	3 cut(s)	332, 1171, 1775
Tru1I	TTAA	5 cut(s)	309, 1290, 1494, 1575, 1935
Tru9I	TTAA	5 cut(s)	309, 1290, 1494, 1575, 1935
TscAI	CASTG	5 cut(s)	169, 1045, 1357, 1552, 1836
TseFI	GTSAC	2 cut(s)	43, 1377
TseI	GCWGC	5 cut(s)	755, 940, 1318, 1361, 1610
Tsp45I	GTSAC	2 cut(s)	43, 1377
TspDTI	ATGAA	3 cut(s)	455, 942, 974
TspGWI	ACGGA	2 cut(s)	983, 1581
TspRI	CASTG	5 cut(s)	169, 1045, 1357, 1552, 1836
Van91I	CCANNNNNTGG	1 cut(s)	1478
VpaK11BI	GGWCC	2 cut(s)	137, 1820
XagI	CCTNNNNNAGG	1 cut(s)	845
XapI	RAATTY	5 cut(s)	143, 194, 208, 1799, 1872
XceI	RCATGY	1 cut(s)	1742
XmiI	GTMKAC	1 cut(s)	1618
XspI	CTAG	6 cut(s)	174, 659, 1182, 1503, 1614, 1878
Zsp2I	ATGCAT	2 cut(s)	232, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.