Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Reverse (-)

9861434 .. 9863809

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGATGATGATGATGATAAGTTCCATCCCGCCCTTACCAGCTCCTCCTACTTCTGTCACGACACATACGAAGCCTATTGGCATCATCCCTCCTCCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGGAATTTGAGAAGAAGGTCATCACTGAAAAGACTAAACTAAATCCAGATTCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGGTGGCCGCGTTCCTTTCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCAGTTGTAGATGTTAAAGCTGGAACACCAAAGCCTGATTCCCCCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCACCAGAACCCGAAGAGTTTACTGTTCAACTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGAAAATCGTTTTTGACAGAATTGAGAAGCAGAGAGAGTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGCCACAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAACGGTGTGTGCATCGGCTGGAGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGGATACAAATGGCTGCAATTGATTGGCACGATAATATCTTGGTCGAAGTCATAGACTTTGACGATGTTGAGGATGACTATTTACCTCCTCCACTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTTGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGATTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACAGAGGTGGAACAAGCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGATGATTTCCCCCATTACCGGGGAGCTTGTCCCTAACACTGAGATGTCTGAGCACATGAGGATTTCCCTTATTGATCCAAGGTACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGGCCTGACATTTTTGGTTCCACAGAGGAGGAAGTTTCCAATGCTGTTAAGGCTGAGATTGGAAAGCAGGAAAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGCGCAGAAAATCAAGCCATGTCACAGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGCAAGGAACCTTCCTGGTCCGGAGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTCTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCATACATACCTACAAACACAATGCCGATGCCTCCGCCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAGCGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCACCCGGGACCGGTCGGCATCAATATATCTGTTCCCAATGTTGATGAAGGTAACCTCAATGGACAACTTTTGGAGATCACAGTGCAGTCTTTATCTGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTGGGGAAATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAATACGGGTTTTCTAAAAGACAATTTGTCCCTTGCATATTACAATGTAGGCGCACGACAAACACTTGCTCTTTCAATAAGAGAGCGCGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

699

Amino Acids

78.3

Weight (kDa)

5.31

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	37 - 90	3.7e-17	Surp module
Surp	PF01805	148 - 199	1.7e-17	Surp module
PRP21_like_P	PF12230	218 - 417	2.4e-47	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	627 - 694	2e-07	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
Acc36I	ACCTGC	2 cut(s)	1324, 1535
AccB7I	CCANNNNNTGG	1 cut(s)	1490
AccI	GTMKAC	1 cut(s)	1630
AccII	CGCG	4 cut(s)	266, 650, 1371, 2082
AccIII	TCCGGA	1 cut(s)	1456
AclWI	GGATC	2 cut(s)	1036, 1136
AcoI	YGGCCR	3 cut(s)	261, 1366, 1733
AcsI	RAATTY	5 cut(s)	155, 206, 220, 1811, 1947
AcuI	CTGAAG	4 cut(s)	315, 659, 753, 1452
AdeI	CACNNNGTG	2 cut(s)	259, 1493
AfaI	GTAC	3 cut(s)	1151, 1549, 1638
AfiI	CCNNNNNNNGG	8 cut(s)	620, 859, 1035, 1085, 1086, 1490, 1834, 1969
AgeI	ACCGGT	1 cut(s)	1834
AhdI	GACNNNNNGTC	1 cut(s)	2020
AhlI	ACTAGT	1 cut(s)	1193
AjnI	CCWGG	2 cut(s)	1450, 1489
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	4 cut(s)	1018, 1056, 1184, 1456
AlwI	GGATC	2 cut(s)	1036, 1136
Ama87I	CYCGRG	2 cut(s)	1028, 1828
Aor13HI	TCCGGA	1 cut(s)	1456
AoxI	GGCC	4 cut(s)	261, 1256, 1366, 1733
ApeKI	GCWGC	4 cut(s)	767, 952, 1330, 1622
ApoI	RAATTY	5 cut(s)	155, 206, 220, 1811, 1947
AsiGI	ACCGGT	1 cut(s)	1834
AspLEI	GCGC	3 cut(s)	1373, 2048, 2082
AspS9I	GGNCC	3 cut(s)	149, 1454, 1832
AsuC2I	CCSGG	5 cut(s)	257, 1087, 1255, 1829, 1830
AsuHPI	GGTGA	1 cut(s)	1421
AvaI	CYCGRG	2 cut(s)	1028, 1828
AvaII	GGWCC	3 cut(s)	149, 1454, 1832
BaeGI	GKGCMC	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	282, 734
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	4 cut(s)	754, 964, 1342, 1634
BccI	CCATC	3 cut(s)	32, 671, 1340
BceAI	ACGGC	1 cut(s)	1487
BciT130I	CCWGG	2 cut(s)	1452, 1491
BciVI	GTATCC	1 cut(s)	750
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	5 cut(s)	257, 1087, 1255, 1829, 1830
BcoDI	GTCTC	4 cut(s)	1018, 1056, 1184, 1456
BcuI	ACTAGT	1 cut(s)	1193
BfaI	CTAG	4 cut(s)	671, 1194, 1515, 1626
BfmI	CTRYAG	1 cut(s)	1620
BfuAI	ACCTGC	2 cut(s)	1324, 1535
BfuI	GTATCC	1 cut(s)	750
BglII	AGATCT	1 cut(s)	1221
BisI	GCNGC	9 cut(s)	264, 651, 768, 953, 1331, 1369, 1623, 1715, 1733
BlsI	GCNGC	9 cut(s)	265, 652, 769, 954, 1332, 1370, 1624, 1716, 1734
Bme1390I	CCNGG	7 cut(s)	257, 1087, 1255, 1452, 1491, 1829, 1830
Bme18I	GGWCC	3 cut(s)	149, 1454, 1832
BmeRI	GACNNNNNGTC	1 cut(s)	2020
BmeT110I	CYCGRG	2 cut(s)	1028, 1828
BmgT120I	GGNCC	3 cut(s)	149, 1454, 1832
BmiI	GGNNCC	3 cut(s)	1273, 1445, 1833
BmrFI	CCNGG	7 cut(s)	257, 1087, 1255, 1452, 1491, 1829, 1830
BmrI	ACTGGG	2 cut(s)	460, 526
BmsI	GCATC	7 cut(s)	90, 580, 600, 694, 939, 1695, 1851
BmuI	ACTGGG	2 cut(s)	460, 526
BpiI	GAAGAC	2 cut(s)	282, 734
BpmI	CTGGAG	3 cut(s)	81, 291, 713
Bpu10I	CCTNAGC	2 cut(s)	1209, 1761
BpuEI	CTTGAG	2 cut(s)	405, 1210
BpuMI	CCSGG	5 cut(s)	257, 1087, 1255, 1829, 1830
BsaI	GGTCTC	2 cut(s)	1018, 1456
BsaJI	CCNNGG	4 cut(s)	1029, 1086, 1145, 1828
BsaWI	WCCGGW	3 cut(s)	151, 1456, 1834
BsaXI	ACNNNNNCTCC	2 cut(s)	1585, 1615
Bsc4I	CCNNNNNNNGG	8 cut(s)	620, 859, 1035, 1085, 1086, 1490, 1834, 1969
Bse118I	RCCGGY	1 cut(s)	1834
Bse1I	ACTGG	7 cut(s)	308, 447, 466, 532, 1022, 1050, 1369
BseAI	TCCGGA	1 cut(s)	1456
BseBI	CCWGG	2 cut(s)	1452, 1491
BseDI	CCNNGG	4 cut(s)	1029, 1086, 1145, 1828
BseLI	CCNNNNNNNGG	8 cut(s)	620, 859, 1035, 1085, 1086, 1490, 1834, 1969
BseMII	CTCAG	6 cut(s)	839, 1098, 1107, 1223, 1299, 1647
BseNI	ACTGG	7 cut(s)	308, 447, 466, 532, 1022, 1050, 1369
BseRI	GAGGAG	8 cut(s)	33, 81, 84, 831, 923, 1046, 1295, 1632
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	4 cut(s)	754, 964, 1342, 1634
BseYI	CCCAGC	2 cut(s)	276, 354
BsgI	GTGCAG	1 cut(s)	1928
Bsh1236I	CGCG	4 cut(s)	266, 650, 1371, 2082
Bsh1285I	CGRYCG	1 cut(s)	1839
BshFI	GGCC	4 cut(s)	263, 1258, 1368, 1735
BshTI	ACCGGT	1 cut(s)	1834
BsiEI	CGRYCG	1 cut(s)	1839
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiHKCI	CYCGRG	2 cut(s)	1028, 1828
BsiSI	CCGG	8 cut(s)	152, 256, 1086, 1255, 1457, 1829, 1835, 1970
BslFI	GGGAC	3 cut(s)	1082, 1845, 2008
BslI	CCNNNNNNNGG	8 cut(s)	620, 859, 1035, 1085, 1086, 1490, 1834, 1969
BsmAI	GTCTC	4 cut(s)	1018, 1056, 1184, 1456
BsmFI	GGGAC	3 cut(s)	1082, 1845, 2008
BsmI	GAATGC	2 cut(s)	374, 1402
BsnI	GGCC	4 cut(s)	263, 1258, 1368, 1735
Bso31I	GGTCTC	2 cut(s)	1018, 1456
BsoBI	CYCGRG	2 cut(s)	1028, 1828
Bsp1286I	GDGCHC	2 cut(s)	381, 1122
Bsp13I	TCCGGA	1 cut(s)	1456
Bsp143I	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
BspANI	GGCC	4 cut(s)	263, 1258, 1368, 1735
BspCNI	CTCAG	6 cut(s)	840, 1099, 1108, 1222, 1300, 1648
BspEI	TCCGGA	1 cut(s)	1456
BspFNI	CGCG	4 cut(s)	266, 650, 1371, 2082
BspLI	GGNNCC	3 cut(s)	1273, 1445, 1833
BspMAI	CTGCAG	1 cut(s)	1624
BspMI	ACCTGC	2 cut(s)	1324, 1535
BspPI	GGATC	2 cut(s)	1036, 1136
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	2 cut(s)	1018, 1456
BsrFI	RCCGGY	1 cut(s)	1834
BsrI	ACTGG	7 cut(s)	308, 447, 466, 532, 1022, 1050, 1369
BssAI	RCCGGY	1 cut(s)	1834
BssECI	CCNNGG	4 cut(s)	1029, 1086, 1145, 1828
BssMI	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
BssNAI	GTATAC	1 cut(s)	1631
BssT1I	CCWWGG	1 cut(s)	1145
Bst1107I	GTATAC	1 cut(s)	1631
Bst2UI	CCWGG	2 cut(s)	1452, 1491
Bst4CI	ACNGT	5 cut(s)	409, 678, 1534, 1906, 1927
Bst6I	CTCTTC	6 cut(s)	291, 393, 852, 939, 1016, 1485
BstC8I	GCNNGC	3 cut(s)	303, 717, 1752
BstDEI	CTNAG	9 cut(s)	359, 848, 1107, 1116, 1179, 1209, 1308, 1656, 1761
BstEII	GGTNACC	1 cut(s)	1874
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstFNI	CGCG	4 cut(s)	266, 650, 1371, 2082
BstHHI	GCGC	3 cut(s)	1373, 2048, 2082
BstKTI	GATC	5 cut(s)	286, 1044, 1144, 1224, 1902
BstMAI	GTCTC	4 cut(s)	1018, 1056, 1184, 1456
BstMBI	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
BstMCI	CGRYCG	1 cut(s)	1839
BstMWI	GCNNNNNNNGC	8 cut(s)	721, 1304, 1327, 1368, 1714, 1720, 1729, 1777
BstNI	CCWGG	2 cut(s)	1452, 1491
BstNSI	RCATGY	1 cut(s)	1754
BstPI	GGTNACC	1 cut(s)	1874
BstSCI	CCNGG	7 cut(s)	255, 1085, 1253, 1450, 1489, 1827, 1828
BstSFI	CTRYAG	1 cut(s)	1620
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	4 cut(s)	266, 650, 1371, 2082
BstV1I	GCAGC	4 cut(s)	754, 964, 1342, 1634
BstV2I	GAAGAC	2 cut(s)	282, 734
BstX2I	RGATCY	1 cut(s)	1221
BstXI	CCANNNNNNTGG	1 cut(s)	1675
BstYI	RGATCY	1 cut(s)	1221
BstZ17I	GTATAC	1 cut(s)	1631
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	4 cut(s)	263, 1258, 1368, 1735
BtsI	GCAGTG	1 cut(s)	1564
BtsIMutI	CAGTG	7 cut(s)	174, 845, 1057, 1104, 1362, 1564, 1911
BveI	ACCTGC	2 cut(s)	1324, 1535
Cac8I	GCNNGC	3 cut(s)	303, 717, 1752
CfoI	GCGC	3 cut(s)	1373, 2048, 2082
Cfr10I	RCCGGY	1 cut(s)	1834
Cfr13I	GGNCC	3 cut(s)	149, 1454, 1832
Cfr9I	CCCGGG	1 cut(s)	1828
CsiI	ACCWGGT	1 cut(s)	1489
Csp6I	GTAC	3 cut(s)	1150, 1548, 1637
CspAI	ACCGGT	1 cut(s)	1834
CviQI	GTAC	3 cut(s)	1150, 1548, 1637
DdeI	CTNAG	9 cut(s)	359, 848, 1107, 1116, 1179, 1209, 1308, 1656, 1761
DpnI	GATC	5 cut(s)	285, 1043, 1143, 1223, 1901
DpnII	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
DraIII	CACNNNGTG	2 cut(s)	259, 1493
DriI	GACNNNNNGTC	1 cut(s)	2020
EaeI	YGGCCR	3 cut(s)	261, 1366, 1733
Eam1104I	CTCTTC	6 cut(s)	291, 393, 852, 939, 1016, 1485
Eam1105I	GACNNNNNGTC	1 cut(s)	2020
EarI	CTCTTC	6 cut(s)	291, 393, 852, 939, 1016, 1485
EciI	GGCGGA	3 cut(s)	602, 668, 1701
Eco130I	CCWWGG	1 cut(s)	1145
Eco31I	GGTCTC	2 cut(s)	1018, 1456
Eco47I	GGWCC	3 cut(s)	149, 1454, 1832
Eco57I	CTGAAG	4 cut(s)	315, 659, 753, 1452
Eco88I	CYCGRG	2 cut(s)	1028, 1828
Eco91I	GGTNACC	1 cut(s)	1874
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoO65I	GGTNACC	1 cut(s)	1874
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	1450, 1489
EcoT14I	CCWWGG	1 cut(s)	1145
EcoT22I	ATGCAT	2 cut(s)	244, 595
ErhI	CCWWGG	1 cut(s)	1145
FaqI	GGGAC	3 cut(s)	1082, 1845, 2008
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	1340
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	1630
Fnu4HI	GCNGC	9 cut(s)	264, 651, 768, 953, 1331, 1369, 1623, 1715, 1733
Fsp4HI	GCNGC	9 cut(s)	264, 651, 768, 953, 1331, 1369, 1623, 1715, 1733
FspBI	CTAG	4 cut(s)	671, 1194, 1515, 1626
GlaI	GCGC	3 cut(s)	1372, 2047, 2081
GluI	GCNGC	9 cut(s)	264, 651, 768, 953, 1331, 1369, 1623, 1715, 1733
GsaI	CCCAGC	2 cut(s)	280, 358
GsuI	CTGGAG	3 cut(s)	81, 291, 713
HaeIII	GGCC	4 cut(s)	263, 1258, 1368, 1735
HapII	CCGG	8 cut(s)	152, 256, 1086, 1255, 1457, 1829, 1835, 1970
HhaI	GCGC	3 cut(s)	1373, 2048, 2082
Hin6I	GCGC	3 cut(s)	1371, 2046, 2080
HinP1I	GCGC	3 cut(s)	1371, 2046, 2080
HindIII	AAGCTT	1 cut(s)	1778
HinfI	GANTC	4 cut(s)	200, 344, 1183, 1787
HpaII	CCGG	8 cut(s)	152, 256, 1086, 1255, 1457, 1829, 1835, 1970
HphI	GGTGA	1 cut(s)	1421
Hpy166II	GTNNAC	5 cut(s)	405, 1240, 1429, 1631, 1662
Hpy188I	TCNGA	6 cut(s)	295, 480, 1117, 1657, 1921, 1938
Hpy188III	TCNNGA	8 cut(s)	58, 98, 197, 1187, 1211, 1227, 1457, 1802
Hpy8I	GTNNAC	5 cut(s)	405, 1240, 1429, 1631, 1662
HpyAV	CCTTC	6 cut(s)	160, 614, 959, 1457, 1476, 1865
HpyCH4III	ACNGT	5 cut(s)	409, 678, 1534, 1906, 1927
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	8 cut(s)	721, 1304, 1327, 1368, 1714, 1720, 1729, 1777
HpyF3I	CTNAG	9 cut(s)	359, 848, 1107, 1116, 1179, 1209, 1308, 1656, 1761
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	3 cut(s)	1371, 2046, 2080
Kpn2I	TCCGGA	1 cut(s)	1456
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	6 cut(s)	46, 310, 700, 873, 910, 1090
Lsp1109I	GCAGC	4 cut(s)	754, 964, 1342, 1634
LweI	GCATC	7 cut(s)	90, 580, 600, 694, 939, 1695, 1851
MabI	ACCWGGT	1 cut(s)	1489
MaeI	CTAG	4 cut(s)	671, 1194, 1515, 1626
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	4 cut(s)	55, 976, 1389, 1874
MalI	GATC	5 cut(s)	285, 1043, 1143, 1223, 1901
MboI	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	1221
MhlI	GDGCHC	2 cut(s)	381, 1122
Mph1103I	ATGCAT	2 cut(s)	244, 595
MroI	TCCGGA	1 cut(s)	1456
MseI	TTAA	4 cut(s)	321, 1302, 1506, 1587
MslI	CAYNNNNRTG	3 cut(s)	918, 1109, 1673
MspI	CCGG	8 cut(s)	152, 256, 1086, 1255, 1457, 1829, 1835, 1970
MspR9I	CCNGG	7 cut(s)	257, 1087, 1255, 1452, 1491, 1829, 1830
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	374, 1402
MvaI	CCWGG	2 cut(s)	1452, 1491
MvnI	CGCG	4 cut(s)	266, 650, 1371, 2082
MwoI	GCNNNNNNNGC	8 cut(s)	721, 1304, 1327, 1368, 1714, 1720, 1729, 1777
NciI	CCSGG	5 cut(s)	257, 1087, 1255, 1829, 1830
NdeI	CATATG	1 cut(s)	1340
NdeII	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
NlaIV	GGNNCC	3 cut(s)	1273, 1445, 1833
NmuCI	GTSAC	2 cut(s)	55, 1389
NsiI	ATGCAT	2 cut(s)	244, 595
NspI	RCATGY	1 cut(s)	1754
PaeI	GCATGC	1 cut(s)	1754
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PctI	GAATGC	2 cut(s)	374, 1402
PfeI	GAWTC	4 cut(s)	200, 344, 1183, 1787
PflMI	CCANNNNNTGG	1 cut(s)	1490
PinAI	ACCGGT	1 cut(s)	1834
PkrI	GCNGC	9 cut(s)	265, 652, 769, 954, 1332, 1370, 1624, 1716, 1734
PsiI	TTATAA	1 cut(s)	866
Psp6I	CCWGG	2 cut(s)	1450, 1489
PspEI	GGTNACC	1 cut(s)	1874
PspFI	CCCAGC	2 cut(s)	276, 354
PspGI	CCWGG	2 cut(s)	1450, 1489
PspN4I	GGNNCC	3 cut(s)	1273, 1445, 1833
PspPI	GGNCC	3 cut(s)	149, 1454, 1832
PstI	CTGCAG	1 cut(s)	1624
PsuI	RGATCY	1 cut(s)	1221
RsaI	GTAC	3 cut(s)	1151, 1549, 1638
RsaNI	GTAC	3 cut(s)	1150, 1548, 1637
RseI	CAYNNNNRTG	3 cut(s)	918, 1109, 1673
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	321, 1302, 1506, 1587
SatI	GCNGC	9 cut(s)	264, 651, 768, 953, 1331, 1369, 1623, 1715, 1733
Sau3AI	GATC	5 cut(s)	283, 1041, 1141, 1221, 1899
Sau96I	GGNCC	3 cut(s)	149, 1454, 1832
ScrFI	CCNGG	7 cut(s)	257, 1087, 1255, 1452, 1491, 1829, 1830
SduI	GDGCHC	2 cut(s)	381, 1122
SexAI	ACCWGGT	1 cut(s)	1489
SfaNI	GCATC	7 cut(s)	90, 580, 600, 694, 939, 1695, 1851
SfcI	CTRYAG	1 cut(s)	1620
SinI	GGWCC	3 cut(s)	149, 1454, 1832
SmaI	CCCGGG	1 cut(s)	1830
SmiMI	CAYNNNNRTG	3 cut(s)	918, 1109, 1673
SmlI	CTYRAG	2 cut(s)	420, 1225
SmoI	CTYRAG	2 cut(s)	420, 1225
SpeI	ACTAGT	1 cut(s)	1193
SphI	GCATGC	1 cut(s)	1754
SspMI	CTAG	4 cut(s)	671, 1194, 1515, 1626
StyD4I	CCNGG	7 cut(s)	255, 1085, 1253, 1450, 1489, 1827, 1828
StyI	CCWWGG	1 cut(s)	1145
TaaI	ACNGT	5 cut(s)	409, 678, 1534, 1906, 1927
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	210, 798, 906
TauI	GCSGC	5 cut(s)	266, 653, 1371, 1717, 1735
TfiI	GAWTC	4 cut(s)	200, 344, 1183, 1787
Tru1I	TTAA	4 cut(s)	321, 1302, 1506, 1587
Tru9I	TTAA	4 cut(s)	321, 1302, 1506, 1587
TscAI	CASTG	7 cut(s)	181, 852, 1057, 1111, 1369, 1564, 1911
TseFI	GTSAC	2 cut(s)	55, 1389
TseI	GCWGC	4 cut(s)	767, 952, 1330, 1622
Tsp45I	GTSAC	2 cut(s)	55, 1389
TspDTI	ATGAA	4 cut(s)	467, 954, 986, 1884
TspGWI	ACGGA	1 cut(s)	1593
TspMI	CCCGGG	1 cut(s)	1828
TspRI	CASTG	7 cut(s)	181, 852, 1057, 1111, 1369, 1564, 1911
Van91I	CCANNNNNTGG	1 cut(s)	1490
VpaK11BI	GGWCC	3 cut(s)	149, 1454, 1832
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	5 cut(s)	155, 206, 220, 1811, 1947
XceI	RCATGY	1 cut(s)	1754
XmaI	CCCGGG	1 cut(s)	1828
XmiI	GTMKAC	1 cut(s)	1630
XspI	CTAG	4 cut(s)	671, 1194, 1515, 1626
Zsp2I	ATGCAT	2 cut(s)	244, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.