Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

56598255 .. 56600341

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGATAAGCTCCATCTCGCCCTTACCAGCTCCTCCTACTTGTGTCACGACACATACAAAGCCTATTGGCATCATCCCTCCACCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGAAATTTGAGACCAAGGTCATCACTGAAAAGACTAGACTAAATCCAGATCCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGGTGGCCGCGTTCCTTTCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCACCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCATCAGAACCCGAAGAGTTTACTGTTCAGCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGAATTGACAAGTAGAGAGAGTAAAGACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGACAGAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAGCGGTGTGTGCATCGGCTGGGGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCGAAGTCATAGACTTTGATGATGTTGAGGATGACTATTTACCTCCTCCGCTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTCGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGATTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACGGACGTGGAACAAGCACCAATGAGAATTGTGAACAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCTGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGGCCTGACATTTTTGGTTCCACAGAGGAGGAAGTTTCCAATGCTGTTAAGGCTGAGTTTGGAAAGCAGGACAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGCGCAGCAAATCAAGCCATGTCACAGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGTAAGGAACCTTCCTGGTCAGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTGTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCCTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAGCGACGGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCATCCGGGACCGGTCGGTAACCTCAGAGGACAACTTTTGGAGATCACAGTGCAGTCTTTATCAGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTAGGGAAATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAATACGGGCTTTCTTAAAGACAATTTGTCCCTTGCATATTACAATGTAGGGGCAGGACAAACACTTGCTCTTTCAATAAGAGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

674

Amino Acids

75.63

Weight (kDa)

5.41

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	33 - 86	2.7e-17	Surp module
Surp	PF01805	134 - 185	2.9e-16	Surp module
PRP21_like_P	PF12230	204 - 403	3.3e-45	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	602 - 669	1.4e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
Acc36I	ACCTGC	2 cut(s)	1282, 1493
AccB7I	CCANNNNNTGG	2 cut(s)	1044, 1448
AccBSI	CCGCTC	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	1588
AccII	CGCG	3 cut(s)	254, 608, 1329
AclWI	GGATC	3 cut(s)	182, 994, 1094
AcoI	YGGCCR	3 cut(s)	249, 1324, 1691
AcsI	RAATTY	5 cut(s)	143, 194, 208, 1769, 1872
AcuI	CTGAAG	4 cut(s)	303, 617, 711, 1410
AdeI	CACNNNGTG	2 cut(s)	247, 1451
AfaI	GTAC	2 cut(s)	1507, 1596
AfiI	CCNNNNNNNGG	5 cut(s)	817, 993, 1044, 1448, 1894
AgeI	ACCGGT	1 cut(s)	1792
AgsI	TTSAA	8 cut(s)	208, 526, 558, 815, 884, 920, 1749, 1995
AhdI	GACNNNNNGTC	1 cut(s)	1945
AhlI	ACTAGT	1 cut(s)	1151
AjiI	CACGTC	1 cut(s)	943
AjnI	CCWGG	3 cut(s)	1043, 1408, 1447
Alw21I	GWGCWC	1 cut(s)	1080
Alw26I	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1414
AlwI	GGATC	3 cut(s)	182, 994, 1094
AlwNI	CAGNNNCTG	1 cut(s)	1850
Ama87I	CYCGRG	1 cut(s)	986
AoxI	GGCC	5 cut(s)	249, 1214, 1324, 1635, 1691
ApeKI	GCWGC	5 cut(s)	725, 910, 1288, 1331, 1580
ApoI	RAATTY	5 cut(s)	143, 194, 208, 1769, 1872
AsiGI	ACCGGT	1 cut(s)	1792
AspLEI	GCGC	1 cut(s)	1331
AspS9I	GGNCC	2 cut(s)	137, 1790
AsuC2I	CCSGG	3 cut(s)	245, 1213, 1788
AsuHPI	GGTGA	1 cut(s)	1379
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	2 cut(s)	137, 1790
BaeGI	GKGCMC	1 cut(s)	339
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BbsI	GAAGAC	2 cut(s)	270, 692
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	5 cut(s)	712, 922, 1300, 1343, 1592
BccI	CCATC	4 cut(s)	20, 352, 629, 1298
BceAI	ACGGC	1 cut(s)	1445
BciT130I	CCWGG	3 cut(s)	1045, 1410, 1449
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	3 cut(s)	245, 1213, 1788
BcoDI	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1414
BcuI	ACTAGT	1 cut(s)	1151
BfaI	CTAG	6 cut(s)	174, 629, 1152, 1473, 1584, 1878
BfmI	CTRYAG	1 cut(s)	1578
BfuAI	ACCTGC	2 cut(s)	1282, 1493
BglII	AGATCT	1 cut(s)	1179
BisI	GCNGC	9 cut(s)	252, 609, 726, 911, 1289, 1327, 1332, 1581, 1691
BlpI	GCTNAGC	1 cut(s)	806
BlsI	GCNGC	9 cut(s)	253, 610, 727, 912, 1290, 1328, 1333, 1582, 1692
Bme1390I	CCNGG	6 cut(s)	245, 1045, 1213, 1410, 1449, 1788
Bme18I	GGWCC	2 cut(s)	137, 1790
BmeRI	GACNNNNNGTC	1 cut(s)	1945
BmeT110I	CYCGRG	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	943
BmgT120I	GGNCC	2 cut(s)	137, 1790
BmiI	GGNNCC	3 cut(s)	1231, 1403, 1791
BmrFI	CCNGG	6 cut(s)	245, 1045, 1213, 1410, 1449, 1788
BmrI	ACTGGG	2 cut(s)	418, 484
BmsI	GCATC	6 cut(s)	78, 538, 652, 897, 1653, 1792
BmuI	ACTGGG	2 cut(s)	418, 484
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	270, 692
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	2 cut(s)	1167, 1719
Bpu1102I	GCTNAGC	1 cut(s)	806
BpuEI	CTTGAG	2 cut(s)	363, 1168
BpuMI	CCSGG	3 cut(s)	245, 1213, 1788
BsaI	GGTCTC	3 cut(s)	143, 976, 1414
BsaJI	CCNNGG	3 cut(s)	153, 987, 1044
BsaWI	WCCGGW	1 cut(s)	1792
BsaXI	ACNNNNNCTCC	2 cut(s)	1543, 1573
Bsc4I	CCNNNNNNNGG	5 cut(s)	817, 993, 1044, 1448, 1894
Bse118I	RCCGGY	1 cut(s)	1792
Bse1I	ACTGG	6 cut(s)	405, 424, 490, 980, 1008, 1327
BseBI	CCWGG	3 cut(s)	1045, 1410, 1449
BseDI	CCNNGG	3 cut(s)	153, 987, 1044
BseLI	CCNNNNNNNGG	5 cut(s)	817, 993, 1044, 1448, 1894
BseMII	CTCAG	6 cut(s)	797, 1065, 1181, 1257, 1605, 1819
BseNI	ACTGG	6 cut(s)	405, 424, 490, 980, 1008, 1327
BseRI	GAGGAG	6 cut(s)	21, 789, 881, 1004, 1253, 1590
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	5 cut(s)	712, 922, 1300, 1343, 1592
BseYI	CCCAGC	3 cut(s)	264, 312, 649
BsgI	GTGCAG	1 cut(s)	1853
Bsh1236I	CGCG	3 cut(s)	254, 608, 1329
Bsh1285I	CGRYCG	1 cut(s)	1797
BshFI	GGCC	5 cut(s)	251, 1216, 1326, 1637, 1693
BshTI	ACCGGT	1 cut(s)	1792
BsiEI	CGRYCG	1 cut(s)	1797
BsiHKAI	GWGCWC	1 cut(s)	1080
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	5 cut(s)	244, 1213, 1787, 1793, 1895
BslFI	GGGAC	3 cut(s)	1040, 1803, 1933
BslI	CCNNNNNNNGG	5 cut(s)	817, 993, 1044, 1448, 1894
BsmAI	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1414
BsmFI	GGGAC	3 cut(s)	1040, 1803, 1933
BsmI	GAATGC	2 cut(s)	332, 1360
BsnI	GGCC	5 cut(s)	251, 1216, 1326, 1637, 1693
Bso31I	GGTCTC	3 cut(s)	143, 976, 1414
BsoBI	CYCGRG	1 cut(s)	986
Bsp1286I	GDGCHC	2 cut(s)	339, 1080
Bsp143I	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
Bsp1720I	GCTNAGC	1 cut(s)	806
BspANI	GGCC	5 cut(s)	251, 1216, 1326, 1637, 1693
BspCNI	CTCAG	6 cut(s)	798, 1066, 1180, 1258, 1606, 1818
BspFNI	CGCG	3 cut(s)	254, 608, 1329
BspLI	GGNNCC	3 cut(s)	1231, 1403, 1791
BspMAI	CTGCAG	1 cut(s)	1582
BspMI	ACCTGC	2 cut(s)	1282, 1493
BspPI	GGATC	3 cut(s)	182, 994, 1094
BspQI	GCTCTTC	1 cut(s)	279
BspTNI	GGTCTC	3 cut(s)	143, 976, 1414
BsrBI	CCGCTC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	1792
BsrI	ACTGG	6 cut(s)	405, 424, 490, 980, 1008, 1327
BssAI	RCCGGY	1 cut(s)	1792
BssECI	CCNNGG	3 cut(s)	153, 987, 1044
BssMI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
BssNAI	GTATAC	1 cut(s)	1589
BssT1I	CCWWGG	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	1589
Bst2UI	CCWGG	3 cut(s)	1045, 1410, 1449
Bst4CI	ACNGT	4 cut(s)	367, 1492, 1831, 1852
Bst6I	CTCTTC	6 cut(s)	279, 351, 810, 897, 974, 1443
BstC8I	GCNNGC	3 cut(s)	291, 675, 1710
BstDEI	CTNAG	9 cut(s)	317, 806, 1074, 1137, 1167, 1266, 1614, 1719, 1805
BstEII	GGTNACC	1 cut(s)	1799
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstFNI	CGCG	3 cut(s)	254, 608, 1329
BstHHI	GCGC	1 cut(s)	1331
BstKTI	GATC	6 cut(s)	190, 274, 1002, 1102, 1182, 1827
BstMAI	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1414
BstMBI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
BstMCI	CGRYCG	1 cut(s)	1797
BstMWI	GCNNNNNNNGC	9 cut(s)	640, 679, 1262, 1285, 1326, 1340, 1672, 1687, 1735
BstNI	CCWGG	3 cut(s)	1045, 1410, 1449
BstNSI	RCATGY	1 cut(s)	1712
BstPAI	GACNNNNGTC	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	1799
BstSCI	CCNGG	6 cut(s)	243, 1043, 1211, 1408, 1447, 1786
BstSFI	CTRYAG	1 cut(s)	1578
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	3 cut(s)	254, 608, 1329
BstV1I	GCAGC	5 cut(s)	712, 922, 1300, 1343, 1592
BstV2I	GAAGAC	2 cut(s)	270, 692
BstX2I	RGATCY	2 cut(s)	187, 1179
BstXI	CCANNNNNNTGG	1 cut(s)	1633
BstYI	RGATCY	2 cut(s)	187, 1179
BstZ17I	GTATAC	1 cut(s)	1589
BsuRI	GGCC	5 cut(s)	251, 1216, 1326, 1637, 1693
BtrI	CACGTC	1 cut(s)	943
BtsI	GCAGTG	1 cut(s)	1522
BtsIMutI	CAGTG	5 cut(s)	162, 1015, 1320, 1522, 1836
BveI	ACCTGC	2 cut(s)	1282, 1493
Cac8I	GCNNGC	3 cut(s)	291, 675, 1710
CaiI	CAGNNNCTG	1 cut(s)	1850
CfoI	GCGC	1 cut(s)	1331
Cfr10I	RCCGGY	1 cut(s)	1792
Cfr13I	GGNCC	2 cut(s)	137, 1790
CsiI	ACCWGGT	1 cut(s)	1447
Csp6I	GTAC	2 cut(s)	1506, 1595
CspAI	ACCGGT	1 cut(s)	1792
CspCI	CAANNNNNGTGG	2 cut(s)	1659, 1694
CviQI	GTAC	2 cut(s)	1506, 1595
DdeI	CTNAG	9 cut(s)	317, 806, 1074, 1137, 1167, 1266, 1614, 1719, 1805
DpnI	GATC	6 cut(s)	189, 273, 1001, 1101, 1181, 1826
DpnII	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
DraIII	CACNNNGTG	2 cut(s)	247, 1451
DriI	GACNNNNNGTC	1 cut(s)	1945
EaeI	YGGCCR	3 cut(s)	249, 1324, 1691
Eam1104I	CTCTTC	6 cut(s)	279, 351, 810, 897, 974, 1443
Eam1105I	GACNNNNNGTC	1 cut(s)	1945
EarI	CTCTTC	6 cut(s)	279, 351, 810, 897, 974, 1443
EciI	GGCGGA	2 cut(s)	560, 626
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	3 cut(s)	143, 976, 1414
Eco47I	GGWCC	2 cut(s)	137, 1790
Eco57I	CTGAAG	4 cut(s)	303, 617, 711, 1410
Eco88I	CYCGRG	1 cut(s)	986
Eco91I	GGTNACC	1 cut(s)	1799
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoO65I	GGTNACC	1 cut(s)	1799
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	3 cut(s)	1043, 1408, 1447
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	232, 553
ErhI	CCWWGG	1 cut(s)	153
FaqI	GGGAC	3 cut(s)	1040, 1803, 1933
FauNDI	CATATG	1 cut(s)	1298
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	1588
Fnu4HI	GCNGC	9 cut(s)	252, 609, 726, 911, 1289, 1327, 1332, 1581, 1691
Fsp4HI	GCNGC	9 cut(s)	252, 609, 726, 911, 1289, 1327, 1332, 1581, 1691
FspBI	CTAG	6 cut(s)	174, 629, 1152, 1473, 1584, 1878
GlaI	GCGC	1 cut(s)	1330
GluI	GCNGC	9 cut(s)	252, 609, 726, 911, 1289, 1327, 1332, 1581, 1691
GsaI	CCCAGC	3 cut(s)	268, 316, 653
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	5 cut(s)	251, 1216, 1326, 1637, 1693
HapII	CCGG	5 cut(s)	244, 1213, 1787, 1793, 1895
HhaI	GCGC	1 cut(s)	1331
Hin6I	GCGC	1 cut(s)	1329
HinP1I	GCGC	1 cut(s)	1329
HindIII	AAGCTT	1 cut(s)	1736
HinfI	GANTC	3 cut(s)	302, 1141, 1745
HpaII	CCGG	5 cut(s)	244, 1213, 1787, 1793, 1895
HphI	GGTGA	1 cut(s)	1379
Hpy166II	GTNNAC	6 cut(s)	363, 970, 1198, 1387, 1589, 1620
Hpy188I	TCNGA	8 cut(s)	283, 349, 438, 1075, 1615, 1808, 1846, 1863
Hpy188III	TCNNGA	7 cut(s)	46, 86, 185, 1145, 1169, 1185, 1760
Hpy8I	GTNNAC	6 cut(s)	363, 970, 1198, 1387, 1589, 1620
Hpy99I	CGWCG	1 cut(s)	1734
HpyAV	CCTTC	4 cut(s)	572, 917, 1415, 1434
HpyCH4III	ACNGT	4 cut(s)	367, 1492, 1831, 1852
HpyCH4IV	ACGT	2 cut(s)	123, 942
HpyF10VI	GCNNNNNNNGC	9 cut(s)	640, 679, 1262, 1285, 1326, 1340, 1672, 1687, 1735
HpyF3I	CTNAG	9 cut(s)	317, 806, 1074, 1137, 1167, 1266, 1614, 1719, 1805
HpySE526I	ACGT	2 cut(s)	123, 942
HspAI	GCGC	1 cut(s)	1329
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	8 cut(s)	14, 34, 298, 378, 658, 831, 868, 1048
Lsp1109I	GCAGC	5 cut(s)	712, 922, 1300, 1343, 1592
LweI	GCATC	6 cut(s)	78, 538, 652, 897, 1653, 1792
MabI	ACCWGGT	1 cut(s)	1447
MaeI	CTAG	6 cut(s)	174, 629, 1152, 1473, 1584, 1878
MaeII	ACGT	2 cut(s)	123, 942
MaeIII	GTNAC	5 cut(s)	43, 714, 934, 1347, 1799
MalI	GATC	6 cut(s)	189, 273, 1001, 1101, 1181, 1826
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	2 cut(s)	187, 1179
MhlI	GDGCHC	2 cut(s)	339, 1080
Mph1103I	ATGCAT	2 cut(s)	232, 553
MseI	TTAA	4 cut(s)	1260, 1464, 1545, 1935
MslI	CAYNNNNRTG	3 cut(s)	744, 876, 1631
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	5 cut(s)	244, 1213, 1787, 1793, 1895
MspR9I	CCNGG	6 cut(s)	245, 1045, 1213, 1410, 1449, 1788
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	2 cut(s)	332, 1360
MvaI	CCWGG	3 cut(s)	1045, 1410, 1449
MvnI	CGCG	3 cut(s)	254, 608, 1329
MwoI	GCNNNNNNNGC	9 cut(s)	640, 679, 1262, 1285, 1326, 1340, 1672, 1687, 1735
NciI	CCSGG	3 cut(s)	245, 1213, 1788
NdeI	CATATG	1 cut(s)	1298
NdeII	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
NlaIV	GGNNCC	3 cut(s)	1231, 1403, 1791
NmuCI	GTSAC	2 cut(s)	43, 1347
NsiI	ATGCAT	2 cut(s)	232, 553
NspI	RCATGY	1 cut(s)	1712
PaeI	GCATGC	1 cut(s)	1712
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	2 cut(s)	332, 1360
PfeI	GAWTC	3 cut(s)	302, 1141, 1745
PflMI	CCANNNNNTGG	2 cut(s)	1044, 1448
PfoI	TCCNGGA	1 cut(s)	1786
PinAI	ACCGGT	1 cut(s)	1792
PkrI	GCNGC	9 cut(s)	253, 610, 727, 912, 1290, 1328, 1333, 1582, 1692
PshAI	GACNNNNGTC	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	824
Psp6I	CCWGG	3 cut(s)	1043, 1408, 1447
PspEI	GGTNACC	1 cut(s)	1799
PspFI	CCCAGC	3 cut(s)	264, 312, 649
PspGI	CCWGG	3 cut(s)	1043, 1408, 1447
PspN4I	GGNNCC	3 cut(s)	1231, 1403, 1791
PspPI	GGNCC	2 cut(s)	137, 1790
PstI	CTGCAG	1 cut(s)	1582
PstNI	CAGNNNCTG	1 cut(s)	1850
PsuI	RGATCY	2 cut(s)	187, 1179
RsaI	GTAC	2 cut(s)	1507, 1596
RsaNI	GTAC	2 cut(s)	1506, 1595
RseI	CAYNNNNRTG	3 cut(s)	744, 876, 1631
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	1260, 1464, 1545, 1935
SatI	GCNGC	9 cut(s)	252, 609, 726, 911, 1289, 1327, 1332, 1581, 1691
Sau3AI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1824
Sau96I	GGNCC	2 cut(s)	137, 1790
ScrFI	CCNGG	6 cut(s)	245, 1045, 1213, 1410, 1449, 1788
SduI	GDGCHC	2 cut(s)	339, 1080
SexAI	ACCWGGT	1 cut(s)	1447
SfaNI	GCATC	6 cut(s)	78, 538, 652, 897, 1653, 1792
SfcI	CTRYAG	1 cut(s)	1578
SinI	GGWCC	2 cut(s)	137, 1790
SmiMI	CAYNNNNRTG	3 cut(s)	744, 876, 1631
SmlI	CTYRAG	2 cut(s)	378, 1183
SmoI	CTYRAG	2 cut(s)	378, 1183
SpeI	ACTAGT	1 cut(s)	1151
SphI	GCATGC	1 cut(s)	1712
SspMI	CTAG	6 cut(s)	174, 629, 1152, 1473, 1584, 1878
StyD4I	CCNGG	6 cut(s)	243, 1043, 1211, 1408, 1447, 1786
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	367, 1492, 1831, 1852
TaiI	ACGT	2 cut(s)	126, 945
TaqI	TCGA	3 cut(s)	198, 756, 864
TaqII	GACCGA	1 cut(s)	154
TauI	GCSGC	4 cut(s)	254, 611, 1329, 1693
TfiI	GAWTC	3 cut(s)	302, 1141, 1745
Tru1I	TTAA	4 cut(s)	1260, 1464, 1545, 1935
Tru9I	TTAA	4 cut(s)	1260, 1464, 1545, 1935
TscAI	CASTG	5 cut(s)	169, 1015, 1327, 1522, 1836
TseFI	GTSAC	2 cut(s)	43, 1347
TseI	GCWGC	5 cut(s)	725, 910, 1288, 1331, 1580
Tsp45I	GTSAC	2 cut(s)	43, 1347
TspDTI	ATGAA	3 cut(s)	425, 912, 944
TspGWI	ACGGA	3 cut(s)	953, 1551, 1747
TspRI	CASTG	5 cut(s)	169, 1015, 1327, 1522, 1836
Van91I	CCANNNNNTGG	2 cut(s)	1044, 1448
VpaK11BI	GGWCC	2 cut(s)	137, 1790
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	5 cut(s)	143, 194, 208, 1769, 1872
XceI	RCATGY	1 cut(s)	1712
XmiI	GTMKAC	1 cut(s)	1588
XspI	CTAG	6 cut(s)	174, 629, 1152, 1473, 1584, 1878
Zsp2I	ATGCAT	2 cut(s)	232, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.