Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8010994.1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 533

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8010994.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 533 bp

tgcgagaacccgtcctgacatttttggttccacagaggaggaagtttccaatgctgttaaggctgagattggaaagcaggaaaagcagcaggtcatatgggatggtcatgctggaagcactggccgcgcagcaaatcaagccatgtcacagaatgccaatggaggtgataaaaccgatgttgtgaacaatgaggcaaggaaccttcctggtccggcgagtcgaccttcagttcttcctcttccaccacctggtgttcttgccgttaatcttcctagtgttcctgcaaacacagttcagtacgcaggtacaaatagcaatgatttccctgtgcaatttccattggttaagactactatgcctccgtcagtgtttatgtctgcagctagtatacctgtacctccacctatatctgagtatacaaccatgcaaatggcttacatacctacaaacgcaatgccgatgcctccaccgcctttgcctcatgtgcggccaccaacacctccgcatgcagaacctaagccaaagcgacaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

177

Amino Acids

18.81

Weight (kDa)

8.28

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	80, 294
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccI	GTMKAC	3 cut(s)	221, 389, 417
AccII	CGCG	1 cut(s)	127
AciI	CCGC	4 cut(s)	125, 471, 488, 504
AcoI	YGGCCR	2 cut(s)	122, 489
AcuI	CTGAAG	1 cut(s)	211
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	300, 308, 397
AfiI	CCNNNNNNNGG	1 cut(s)	249
AjnI	CCWGG	2 cut(s)	206, 248
AluBI	AGCT	1 cut(s)	384
AluI	AGCT	1 cut(s)	384
AoxI	GGCC	2 cut(s)	122, 489
ApeKI	GCWGC	3 cut(s)	86, 129, 381
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	98, 141, 393
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	208, 250
BfaI	CTAG	2 cut(s)	274, 385
BfmI	CTRYAG	1 cut(s)	379
BfuAI	ACCTGC	2 cut(s)	80, 294
BisI	GCNGC	5 cut(s)	87, 125, 130, 382, 489
BlsI	GCNGC	5 cut(s)	88, 126, 131, 383, 490
Bme1390I	CCNGG	2 cut(s)	208, 250
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	29, 201
BmrFI	CCNGG	2 cut(s)	208, 250
BmsI	GCATC	1 cut(s)	451
Bpu10I	CCTNAGC	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	2 cut(s)	323, 460
BseBI	CCWGG	2 cut(s)	208, 250
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMI	GCAATG	2 cut(s)	323, 460
BseMII	CTCAG	2 cut(s)	55, 403
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	98, 141, 393
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	124, 491
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	124, 491
BspACI	CCGC	4 cut(s)	125, 471, 488, 504
BspANI	GGCC	2 cut(s)	124, 491
BspCNI	CTCAG	2 cut(s)	56, 404
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	29, 201
BspMAI	CTGCAG	1 cut(s)	383
BspMI	ACCTGC	2 cut(s)	80, 294
BsrDI	GCAATG	2 cut(s)	323, 460
BsrI	ACTGG	1 cut(s)	125
BssNAI	GTATAC	2 cut(s)	390, 418
Bst1107I	GTATAC	2 cut(s)	390, 418
Bst2UI	CCWGG	2 cut(s)	208, 250
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	64, 412, 517
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 83, 124, 138, 470, 485
BstNI	CCWGG	2 cut(s)	208, 250
BstNSI	RCATGY	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	206, 248
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	98, 141, 393
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstZ17I	GTATAC	2 cut(s)	390, 418
BsuRI	GGCC	2 cut(s)	124, 491
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	118, 373
BveI	ACCTGC	2 cut(s)	80, 294
Cac8I	GCNNGC	1 cut(s)	508
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	299, 307, 396
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	5 cut(s)	108, 143, 425, 483, 507
CviJI	RGCY	7 cut(s)	63, 124, 141, 384, 435, 491, 521
CviKI_1	RGCY	7 cut(s)	63, 124, 141, 384, 435, 491, 521
CviQI	GTAC	3 cut(s)	299, 307, 396
DdeI	CTNAG	3 cut(s)	64, 412, 517
DraIII	CACNNNGTG	1 cut(s)	252
EaeI	YGGCCR	2 cut(s)	122, 489
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	206, 248
FaeI	CATG	5 cut(s)	111, 146, 428, 486, 510
FatI	CATG	5 cut(s)	107, 142, 424, 482, 506
FauNDI	CATATG	1 cut(s)	96
FblI	GTMKAC	3 cut(s)	221, 389, 417
Fnu4HI	GCNGC	5 cut(s)	87, 125, 130, 382, 489
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	5 cut(s)	87, 125, 130, 382, 489
FspBI	CTAG	2 cut(s)	274, 385
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	5 cut(s)	87, 125, 130, 382, 489
HaeIII	GGCC	2 cut(s)	124, 491
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	111, 146, 428, 486, 510
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	4 cut(s)	185, 222, 390, 418
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	4 cut(s)	185, 222, 390, 418
HpyAV	CCTTC	2 cut(s)	213, 235
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	5 cut(s)	285, 332, 381, 428, 510
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 83, 124, 138, 470, 485
HpyF3I	CTNAG	3 cut(s)	64, 412, 517
Hsp92II	CATG	5 cut(s)	111, 146, 428, 486, 510
HspAI	GCGC	1 cut(s)	127
Lsp1109I	GCAGC	3 cut(s)	98, 141, 393
LweI	GCATC	1 cut(s)	451
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	274, 385
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	225, 231, 261
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	227
MseI	TTAA	3 cut(s)	58, 265, 346
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	208, 250
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	208, 250
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	6 cut(s)	60, 83, 124, 138, 470, 485
NdeI	CATATG	1 cut(s)	96
NlaIII	CATG	5 cut(s)	111, 146, 428, 486, 510
NlaIV	GGNNCC	2 cut(s)	29, 201
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	510
PaeI	GCATGC	1 cut(s)	510
PctI	GAATGC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	5 cut(s)	88, 126, 131, 383, 490
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	206, 248
PspGI	CCWGG	2 cut(s)	206, 248
PspN4I	GGNNCC	2 cut(s)	29, 201
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	300, 308, 397
RsaNI	GTAC	3 cut(s)	299, 307, 396
RseI	CAYNNNNRTG	1 cut(s)	429
SalI	GTCGAC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	58, 265, 346
SatI	GCNGC	5 cut(s)	87, 125, 130, 382, 489
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	208, 250
SexAI	ACCWGGT	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	4 cut(s)	125, 471, 488, 504
SspMI	CTAG	2 cut(s)	274, 385
StyD4I	CCNGG	2 cut(s)	206, 248
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	221
TasI	AATT	1 cut(s)	333
TauI	GCSGC	2 cut(s)	127, 491
Tru1I	TTAA	3 cut(s)	58, 265, 346
Tru9I	TTAA	3 cut(s)	58, 265, 346
TscAI	CASTG	2 cut(s)	125, 373
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	86, 129, 381
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	125, 373
Van91I	CCANNNNNTGG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	510
XmiI	GTMKAC	3 cut(s)	221, 389, 417
XspI	CTAG	2 cut(s)	274, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.