Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Reverse (-)

99410 .. 99913

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003108.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcctccgtcagtgtttatgtctgcagctagtatacctgtacctcctccacctgtatctgagtttacaaccatgcaaatggcttacatacctacaaacgcaatgccgacgcctccaccgcctttgcctcatgtgcggccaccaacacctccgcatgcagaacctaagccaaagcgacagaagcttgatgattcaatgcttattccagaagataaatttctggcacagcacccgggaccggtcggcatcaatatatctgttcccaatgttgatgaaggtaacctcaagggacaacttttggagatcacagtgcagtctttatctgaaactgttggcagtctgaaagagaaaatttctggggaaatccagcttccggcaaacaaacagaaattgagtggaaatacgggttttctaaaagacaatttgtcccttgcatattacaatgtaggcgcaggacaaacacttgctctttcaataagagagcgcggtggtagaaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

167

Amino Acids

18.0

Weight (kDa)

9.22

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	1 cut(s)	486
AciI	CCGC	4 cut(s)	119, 136, 152, 486
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	215, 351
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	238, 373
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	195, 474
AhdI	GACNNNNNGTC	1 cut(s)	424
AluBI	AGCT	3 cut(s)	29, 184, 370
AluI	AGCT	3 cut(s)	29, 184, 370
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	215, 351
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	452, 486
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	233, 234
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	38
BcnI	CCSGG	2 cut(s)	233, 234
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	27, 137
BlsI	GCNGC	2 cut(s)	28, 138
Bme1390I	CCNGG	2 cut(s)	233, 234
Bme18I	GGWCC	1 cut(s)	236
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	233, 234
BmsI	GCATC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	233, 234
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 373
Bse118I	RCCGGY	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	238, 373
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	233, 239, 374
BslFI	GGGAC	3 cut(s)	249, 303, 412
BslI	CCNNNNNNNGG	2 cut(s)	238, 373
BsmFI	GGGAC	3 cut(s)	249, 303, 412
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	4 cut(s)	119, 136, 152, 486
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	303
BssNAI	GTATAC	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	110
Bst1107I	GTATAC	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	310, 331
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	60, 165
BstEII	GGTNACC	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	452, 486
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 133, 181
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	231, 232
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	18, 315
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	2 cut(s)	452, 486
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	236
Cfr9I	CCCGGG	1 cut(s)	232
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	41
CspAI	ACCGGT	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	73, 131, 155
CviJI	RGCY	6 cut(s)	29, 83, 139, 169, 184, 370
CviKI_1	RGCY	6 cut(s)	29, 83, 139, 169, 184, 370
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	60, 165
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	137
Eam1105I	GACNNNNNGTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
FaeI	CATG	3 cut(s)	76, 134, 158
FaiI	YATR	8 cut(s)	20, 35, 74, 89, 132, 156, 254, 436
FaqI	GGGAC	3 cut(s)	249, 303, 412
FatI	CATG	3 cut(s)	72, 130, 154
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	27, 137
Fsp4HI	GCNGC	2 cut(s)	27, 137
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	2 cut(s)	451, 485
GluI	GCNGC	2 cut(s)	27, 137
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	3 cut(s)	233, 239, 374
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	452, 486
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	76, 134, 158
Hin6I	GCGC	2 cut(s)	450, 484
HinP1I	GCGC	2 cut(s)	450, 484
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	3 cut(s)	233, 239, 374
Hpy166II	GTNNAC	2 cut(s)	35, 66
Hpy188I	TCNGA	3 cut(s)	61, 325, 342
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	35, 66
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	310, 331
HpyCH4V	TGCA	5 cut(s)	26, 76, 158, 313, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 133, 181
HpyF3I	CTNAG	2 cut(s)	60, 165
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	76, 134, 158
HspAI	GCGC	2 cut(s)	450, 484
Kzo9I	GATC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	221
MluCI	AATT	4 cut(s)	215, 351, 389, 421
MnlI	CCTC	7 cut(s)	15, 54, 57, 123, 138, 159, 293
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	3 cut(s)	233, 239, 374
MspR9I	CCNGG	2 cut(s)	233, 234
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	118, 133, 181
NciI	CCSGG	2 cut(s)	233, 234
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	76, 134, 158
NlaIV	GGNNCC	1 cut(s)	237
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	28, 138
PspEI	GGTNACC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	2 cut(s)	27, 137
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	233, 234
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	236
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	4 cut(s)	215, 351, 389, 421
SsiI	CCGC	4 cut(s)	119, 136, 152, 486
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	231, 232
TaaI	ACNGT	2 cut(s)	310, 331
TasI	AATT	4 cut(s)	215, 351, 389, 421
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	2 cut(s)	18, 315
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	288
TspMI	CCCGGG	1 cut(s)	232
TspRI	CASTG	2 cut(s)	18, 315
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	215, 351
XceI	RCATGY	1 cut(s)	158
XmaI	CCCGGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.