Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Forward (+)

56557318 .. 56559404

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGATAAGCTCCATCTCGCCCTTACCAGCTCCTCCTACTTCTGTCACGACACATACAAAGCCTATTGGCATCATCCCTCCACCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGAAATTTGAGACCAAGGTCATCACTGAAAAGACTAGACTAAATTCAGATCCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGGTGGCCGCGTTCCTTTCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCAGTTGTAGATGTTAAAGCTGGAACACCAAAGCCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCATCAGAACCCGAAGAGTTTACTGTTCAGCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGACAGAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAGCGGTGTGTGCATCGGCTGGGGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCGAAGTCATAGACTTTGATGATGTTGAGGATGACTATTTACCTCCTCCGCTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTCGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGATTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACGGAGGTGGAACAAGCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGGCCTGACATTTTTGGTTCCACAGAGGAGGAAGTTTCCAATGCTGTTAAGGCTGAGTTTGGAAAGCAGGACAAGCAGCAGGTCAATGGGATGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGTAAGGAACCTTCCTGGTCAGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTGTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCCTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCACATGCAGAACCTAAGCCAAAGCGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCATCCGGGACCGATCACAGTGCAGTCTTTATCAGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTAGGGAAATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAATACGGGCTTTCTTAAAGACAATTTGTCCCTTGCATATTACAATGTAGGGGCAGGACAAACACTTGCTCTTTCAATAAGAGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

648

Amino Acids

72.59

Weight (kDa)

5.51

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	33 - 86	1.9e-17	Surp module
Surp	PF01805	144 - 185	2.3e-07	Surp module
PRP21_like_P	PF12230	204 - 403	2.5e-47	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	588 - 643	4e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
Acc36I	ACCTGC	2 cut(s)	1282, 1445
AccB7I	CCANNNNNTGG	1 cut(s)	1400
AccBSI	CCGCTC	1 cut(s)	634
AccI	GTMKAC	1 cut(s)	1540
AccII	CGCG	2 cut(s)	254, 608
AciI	CCGC	8 cut(s)	252, 545, 608, 611, 634, 803, 1625, 1642
AclWI	GGATC	3 cut(s)	182, 994, 1094
AcoI	YGGCCR	2 cut(s)	249, 1643
AcsI	RAATTY	6 cut(s)	143, 181, 194, 208, 1721, 1794
AcuI	CTGAAG	4 cut(s)	303, 617, 711, 1362
AdeI	CACNNNGTG	2 cut(s)	247, 1403
AfaI	GTAC	2 cut(s)	1459, 1548
AfiI	CCNNNNNNNGG	6 cut(s)	817, 993, 1043, 1044, 1400, 1816
AgsI	TTSAA	8 cut(s)	208, 526, 558, 815, 884, 920, 1701, 1917
AhdI	GACNNNNNGTC	1 cut(s)	1867
AhlI	ACTAGT	1 cut(s)	1151
AjnI	CCWGG	2 cut(s)	1360, 1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
Alw21I	GWGCWC	1 cut(s)	1080
Alw26I	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1366
AlwI	GGATC	3 cut(s)	182, 994, 1094
AlwNI	CAGNNNCTG	1 cut(s)	1772
Ama87I	CYCGRG	1 cut(s)	986
AoxI	GGCC	4 cut(s)	249, 1214, 1587, 1643
ApeKI	GCWGC	4 cut(s)	725, 910, 1288, 1532
ApoI	RAATTY	6 cut(s)	143, 181, 194, 208, 1721, 1794
AspS9I	GGNCC	2 cut(s)	137, 1742
AsuC2I	CCSGG	4 cut(s)	245, 1045, 1213, 1740
AsuHPI	GGTGA	1 cut(s)	1331
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	2 cut(s)	137, 1742
BaeGI	GKGCMC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	1341, 1373
BbsI	GAAGAC	2 cut(s)	270, 692
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	4 cut(s)	712, 922, 1300, 1544
BccI	CCATC	3 cut(s)	20, 382, 629
BceAI	ACGGC	1 cut(s)	1397
BcgI	CGANNNNNNTGC	2 cut(s)	1735, 1769
BciT130I	CCWGG	2 cut(s)	1362, 1401
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	4 cut(s)	245, 1045, 1213, 1740
BcoDI	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1366
BcuI	ACTAGT	1 cut(s)	1151
BfaI	CTAG	6 cut(s)	174, 629, 1152, 1425, 1536, 1800
BfmI	CTRYAG	1 cut(s)	1530
BfuAI	ACCTGC	2 cut(s)	1282, 1445
BglII	AGATCT	1 cut(s)	1179
BisI	GCNGC	7 cut(s)	252, 609, 726, 911, 1289, 1533, 1643
BlpI	GCTNAGC	1 cut(s)	806
BlsI	GCNGC	7 cut(s)	253, 610, 727, 912, 1290, 1534, 1644
Bme1390I	CCNGG	6 cut(s)	245, 1045, 1213, 1362, 1401, 1740
Bme18I	GGWCC	2 cut(s)	137, 1742
BmeRI	GACNNNNNGTC	1 cut(s)	1867
BmeT110I	CYCGRG	1 cut(s)	986
BmgT120I	GGNCC	2 cut(s)	137, 1742
BmiI	GGNNCC	3 cut(s)	1231, 1355, 1743
BmrFI	CCNGG	6 cut(s)	245, 1045, 1213, 1362, 1401, 1740
BmrI	ACTGGG	2 cut(s)	448, 484
BmsI	GCATC	6 cut(s)	78, 538, 652, 897, 1605, 1744
BmuI	ACTGGG	2 cut(s)	448, 484
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	270, 692
BpmI	CTGGAG	2 cut(s)	69, 279
Bpu10I	CCTNAGC	2 cut(s)	1167, 1671
Bpu1102I	GCTNAGC	1 cut(s)	806
BpuEI	CTTGAG	2 cut(s)	393, 1168
BpuMI	CCSGG	4 cut(s)	245, 1045, 1213, 1740
BsaI	GGTCTC	3 cut(s)	143, 976, 1366
BsaJI	CCNNGG	3 cut(s)	153, 987, 1044
BsaXI	ACNNNNNCTCC	2 cut(s)	1495, 1525
Bsc4I	CCNNNNNNNGG	6 cut(s)	817, 993, 1043, 1044, 1400, 1816
Bse1I	ACTGG	6 cut(s)	296, 435, 454, 490, 980, 1008
BseBI	CCWGG	2 cut(s)	1362, 1401
BseDI	CCNNGG	3 cut(s)	153, 987, 1044
BseLI	CCNNNNNNNGG	6 cut(s)	817, 993, 1043, 1044, 1400, 1816
BseMII	CTCAG	5 cut(s)	797, 1065, 1181, 1257, 1557
BseNI	ACTGG	6 cut(s)	296, 435, 454, 490, 980, 1008
BseRI	GAGGAG	6 cut(s)	21, 789, 881, 1004, 1253, 1542
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	4 cut(s)	712, 922, 1300, 1544
BseYI	CCCAGC	3 cut(s)	264, 342, 649
BsgI	GTGCAG	1 cut(s)	1775
Bsh1236I	CGCG	2 cut(s)	254, 608
BshFI	GGCC	4 cut(s)	251, 1216, 1589, 1645
BsiHKAI	GWGCWC	1 cut(s)	1080
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	5 cut(s)	244, 1044, 1213, 1739, 1817
BslFI	GGGAC	3 cut(s)	1040, 1755, 1855
BslI	CCNNNNNNNGG	6 cut(s)	817, 993, 1043, 1044, 1400, 1816
BsmAI	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1366
BsmFI	GGGAC	3 cut(s)	1040, 1755, 1855
BsmI	GAATGC	2 cut(s)	362, 1312
BsnI	GGCC	4 cut(s)	251, 1216, 1589, 1645
Bso31I	GGTCTC	3 cut(s)	143, 976, 1366
BsoBI	CYCGRG	1 cut(s)	986
Bsp1286I	GDGCHC	2 cut(s)	369, 1080
Bsp143I	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
Bsp1720I	GCTNAGC	1 cut(s)	806
BspACI	CCGC	8 cut(s)	252, 545, 608, 611, 634, 803, 1625, 1642
BspANI	GGCC	4 cut(s)	251, 1216, 1589, 1645
BspCNI	CTCAG	5 cut(s)	798, 1066, 1180, 1258, 1558
BspFNI	CGCG	2 cut(s)	254, 608
BspLI	GGNNCC	3 cut(s)	1231, 1355, 1743
BspMAI	CTGCAG	1 cut(s)	1534
BspMI	ACCTGC	2 cut(s)	1282, 1445
BspPI	GGATC	3 cut(s)	182, 994, 1094
BspQI	GCTCTTC	1 cut(s)	279
BspTNI	GGTCTC	3 cut(s)	143, 976, 1366
BsrBI	CCGCTC	1 cut(s)	634
BsrI	ACTGG	6 cut(s)	296, 435, 454, 490, 980, 1008
BssECI	CCNNGG	3 cut(s)	153, 987, 1044
BssMI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
BssNAI	GTATAC	1 cut(s)	1541
BssT1I	CCWWGG	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	1541
Bst2UI	CCWGG	2 cut(s)	1362, 1401
Bst4CI	ACNGT	4 cut(s)	397, 1444, 1753, 1774
Bst6I	CTCTTC	6 cut(s)	279, 381, 810, 897, 974, 1395
BstC8I	GCNNGC	2 cut(s)	291, 675
BstDEI	CTNAG	8 cut(s)	347, 806, 1074, 1137, 1167, 1266, 1566, 1671
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstFNI	CGCG	2 cut(s)	254, 608
BstKTI	GATC	6 cut(s)	190, 274, 1002, 1102, 1182, 1749
BstMAI	GTCTC	5 cut(s)	143, 976, 1014, 1142, 1366
BstMBI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
BstMWI	GCNNNNNNNGC	7 cut(s)	640, 679, 1262, 1285, 1624, 1639, 1687
BstNI	CCWGG	2 cut(s)	1362, 1401
BstNSI	RCATGY	1 cut(s)	1664
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	6 cut(s)	243, 1043, 1211, 1360, 1399, 1738
BstSFI	CTRYAG	1 cut(s)	1530
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	2 cut(s)	254, 608
BstV1I	GCAGC	4 cut(s)	712, 922, 1300, 1544
BstV2I	GAAGAC	2 cut(s)	270, 692
BstX2I	RGATCY	2 cut(s)	187, 1179
BstXI	CCANNNNNNTGG	1 cut(s)	1585
BstYI	RGATCY	2 cut(s)	187, 1179
BstZ17I	GTATAC	1 cut(s)	1541
BsuRI	GGCC	4 cut(s)	251, 1216, 1589, 1645
BtsI	GCAGTG	1 cut(s)	1474
BtsIMutI	CAGTG	4 cut(s)	162, 1015, 1474, 1758
BveI	ACCTGC	2 cut(s)	1282, 1445
Cac8I	GCNNGC	2 cut(s)	291, 675
CaiI	CAGNNNCTG	1 cut(s)	1772
Cfr13I	GGNCC	2 cut(s)	137, 1742
CsiI	ACCWGGT	1 cut(s)	1399
Csp6I	GTAC	2 cut(s)	1458, 1547
CspCI	CAANNNNNGTGG	2 cut(s)	1611, 1646
CviAII	CATG	8 cut(s)	227, 616, 928, 1024, 1081, 1579, 1637, 1661
CviQI	GTAC	2 cut(s)	1458, 1547
DdeI	CTNAG	8 cut(s)	347, 806, 1074, 1137, 1167, 1266, 1566, 1671
DpnI	GATC	6 cut(s)	189, 273, 1001, 1101, 1181, 1748
DpnII	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
DraIII	CACNNNGTG	2 cut(s)	247, 1403
DriI	GACNNNNNGTC	1 cut(s)	1867
EaeI	YGGCCR	2 cut(s)	249, 1643
Eam1104I	CTCTTC	6 cut(s)	279, 381, 810, 897, 974, 1395
Eam1105I	GACNNNNNGTC	1 cut(s)	1867
EarI	CTCTTC	6 cut(s)	279, 381, 810, 897, 974, 1395
EciI	GGCGGA	2 cut(s)	560, 626
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	3 cut(s)	143, 976, 1366
Eco47I	GGWCC	2 cut(s)	137, 1742
Eco57I	CTGAAG	4 cut(s)	303, 617, 711, 1362
Eco88I	CYCGRG	1 cut(s)	986
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	1360, 1399
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	232, 553
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	8 cut(s)	230, 619, 931, 1027, 1084, 1582, 1640, 1664
FaqI	GGGAC	3 cut(s)	1040, 1755, 1855
FatI	CATG	8 cut(s)	226, 615, 927, 1023, 1080, 1578, 1636, 1660
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	1540
Fnu4HI	GCNGC	7 cut(s)	252, 609, 726, 911, 1289, 1533, 1643
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	7 cut(s)	252, 609, 726, 911, 1289, 1533, 1643
FspBI	CTAG	6 cut(s)	174, 629, 1152, 1425, 1536, 1800
GluI	GCNGC	7 cut(s)	252, 609, 726, 911, 1289, 1533, 1643
GsaI	CCCAGC	3 cut(s)	268, 346, 653
GsuI	CTGGAG	2 cut(s)	69, 279
HaeIII	GGCC	4 cut(s)	251, 1216, 1589, 1645
HapII	CCGG	5 cut(s)	244, 1044, 1213, 1739, 1817
Hin1II	CATG	8 cut(s)	230, 619, 931, 1027, 1084, 1582, 1640, 1664
HindIII	AAGCTT	1 cut(s)	1688
HinfI	GANTC	3 cut(s)	332, 1141, 1697
HpaII	CCGG	5 cut(s)	244, 1044, 1213, 1739, 1817
HphI	GGTGA	1 cut(s)	1331
Hpy166II	GTNNAC	5 cut(s)	393, 1198, 1339, 1541, 1572
Hpy188I	TCNGA	8 cut(s)	187, 283, 379, 468, 1075, 1567, 1768, 1785
Hpy188III	TCNNGA	6 cut(s)	46, 86, 1145, 1169, 1185, 1712
Hpy8I	GTNNAC	5 cut(s)	393, 1198, 1339, 1541, 1572
HpyAV	CCTTC	4 cut(s)	572, 917, 1367, 1386
HpyCH4III	ACNGT	4 cut(s)	397, 1444, 1753, 1774
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	7 cut(s)	640, 679, 1262, 1285, 1624, 1639, 1687
HpyF3I	CTNAG	8 cut(s)	347, 806, 1074, 1137, 1167, 1266, 1566, 1671
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	8 cut(s)	230, 619, 931, 1027, 1084, 1582, 1640, 1664
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	8 cut(s)	14, 34, 298, 408, 658, 831, 868, 1048
Lsp1109I	GCAGC	4 cut(s)	712, 922, 1300, 1544
LweI	GCATC	6 cut(s)	78, 538, 652, 897, 1605, 1744
MabI	ACCWGGT	1 cut(s)	1399
MaeI	CTAG	6 cut(s)	174, 629, 1152, 1425, 1536, 1800
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	43, 714, 934
MalI	GATC	6 cut(s)	189, 273, 1001, 1101, 1181, 1748
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	2 cut(s)	187, 1179
MhlI	GDGCHC	2 cut(s)	369, 1080
Mph1103I	ATGCAT	2 cut(s)	232, 553
MseI	TTAA	5 cut(s)	309, 1260, 1416, 1497, 1857
MslI	CAYNNNNRTG	3 cut(s)	744, 876, 1583
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	5 cut(s)	244, 1044, 1213, 1739, 1817
MspR9I	CCNGG	6 cut(s)	245, 1045, 1213, 1362, 1401, 1740
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	2 cut(s)	362, 1312
MvaI	CCWGG	2 cut(s)	1362, 1401
MvnI	CGCG	2 cut(s)	254, 608
MwoI	GCNNNNNNNGC	7 cut(s)	640, 679, 1262, 1285, 1624, 1639, 1687
NciI	CCSGG	4 cut(s)	245, 1045, 1213, 1740
NdeII	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
NlaIII	CATG	8 cut(s)	230, 619, 931, 1027, 1084, 1582, 1640, 1664
NlaIV	GGNNCC	3 cut(s)	1231, 1355, 1743
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	2 cut(s)	232, 553
NspI	RCATGY	1 cut(s)	1664
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	2 cut(s)	362, 1312
PfeI	GAWTC	3 cut(s)	332, 1141, 1697
PflMI	CCANNNNNTGG	1 cut(s)	1400
PfoI	TCCNGGA	1 cut(s)	1738
PkrI	GCNGC	7 cut(s)	253, 610, 727, 912, 1290, 1534, 1644
PshAI	GACNNNNGTC	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	824
Psp6I	CCWGG	2 cut(s)	1360, 1399
PspFI	CCCAGC	3 cut(s)	264, 342, 649
PspGI	CCWGG	2 cut(s)	1360, 1399
PspN4I	GGNNCC	3 cut(s)	1231, 1355, 1743
PspPI	GGNCC	2 cut(s)	137, 1742
PstI	CTGCAG	1 cut(s)	1534
PstNI	CAGNNNCTG	1 cut(s)	1772
PsuI	RGATCY	2 cut(s)	187, 1179
RsaI	GTAC	2 cut(s)	1459, 1548
RsaNI	GTAC	2 cut(s)	1458, 1547
RseI	CAYNNNNRTG	3 cut(s)	744, 876, 1583
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	5 cut(s)	309, 1260, 1416, 1497, 1857
SatI	GCNGC	7 cut(s)	252, 609, 726, 911, 1289, 1533, 1643
Sau3AI	GATC	6 cut(s)	187, 271, 999, 1099, 1179, 1746
Sau96I	GGNCC	2 cut(s)	137, 1742
ScrFI	CCNGG	6 cut(s)	245, 1045, 1213, 1362, 1401, 1740
SduI	GDGCHC	2 cut(s)	369, 1080
SexAI	ACCWGGT	1 cut(s)	1399
SfaNI	GCATC	6 cut(s)	78, 538, 652, 897, 1605, 1744
SfcI	CTRYAG	1 cut(s)	1530
SinI	GGWCC	2 cut(s)	137, 1742
SmiMI	CAYNNNNRTG	3 cut(s)	744, 876, 1583
SmlI	CTYRAG	2 cut(s)	408, 1183
SmoI	CTYRAG	2 cut(s)	408, 1183
SpeI	ACTAGT	1 cut(s)	1151
SsiI	CCGC	8 cut(s)	252, 545, 608, 611, 634, 803, 1625, 1642
SspMI	CTAG	6 cut(s)	174, 629, 1152, 1425, 1536, 1800
StyD4I	CCNGG	6 cut(s)	243, 1043, 1211, 1360, 1399, 1738
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	397, 1444, 1753, 1774
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	198, 756, 864
TaqII	GACCGA	2 cut(s)	154, 1759
TauI	GCSGC	3 cut(s)	254, 611, 1645
TfiI	GAWTC	3 cut(s)	332, 1141, 1697
Tru1I	TTAA	5 cut(s)	309, 1260, 1416, 1497, 1857
Tru9I	TTAA	5 cut(s)	309, 1260, 1416, 1497, 1857
TscAI	CASTG	4 cut(s)	169, 1015, 1474, 1758
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	725, 910, 1288, 1532
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	455, 912, 944, 1319
TspGWI	ACGGA	2 cut(s)	953, 1503
TspRI	CASTG	4 cut(s)	169, 1015, 1474, 1758
Van91I	CCANNNNNTGG	1 cut(s)	1400
VpaK11BI	GGWCC	2 cut(s)	137, 1742
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	6 cut(s)	143, 181, 194, 208, 1721, 1794
XceI	RCATGY	1 cut(s)	1664
XmiI	GTMKAC	1 cut(s)	1540
XspI	CTAG	6 cut(s)	174, 629, 1152, 1425, 1536, 1800
Zsp2I	ATGCAT	2 cut(s)	232, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.