Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Reverse (-)

9452923 .. 9455019

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG127900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGATGATGATGATAAGTTCCATCTCGCCCTTACCAGCTCCTCCTACTTCTGTTACGACACATACAAAGCCTATTGGCATCATCCCTCCTCCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAGGAATGGACCGGAATTTGAGAAGAAGGTCATCACTGAAAAGACTAAACTAAATCCAGATCCAAAATTCGAATTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGGTGGCCGAATTCCGTGCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCGGTTGTAGATGTTGAAGCTGGAGCACCAAAGCCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCACCAGAACCCGAAGAGTTTACTGTTCATCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATTTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGAATTGAGAAGCAGAGAGAGTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGCCACAAGAAGGGATGACAGAGAAACTGAAGAAGAACACGGCGGACATGACCATCGTGCTAGAACGGTGTGTGCATCGGCTGGAGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGACAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCGAAGTCATAGACTTTGATGATGTTGAGGATGACTATTTACCTCCTCCGCTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTTGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGAGTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACAGAGGTGGAACAAGCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGTCCGGACATTTTTGGTTCCACAGAGGAGGAAGTTTCCAATGCTGTTAAGGCTGAGATTGGAAAGCAGGAAAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGTGCAGCAAATCCAGCCATGTCACAGAATGCCAATGGAGATGATAAAACTGATGTTGTGAACAATGAGGCAAGGAACCTTCCTGGTCCGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTGGTGTTCTTGCTTTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCTTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAGCGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCACCCGGGACCGGTCGGCATCAATATATCTGTTCCCAATGTTGATGAAGGTAACCTCAAGGGACAACTTTTGGAGATCACAGTGCAGTCTTTATCTGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTGGGGAAATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAATTCGGGATTTCTGAAAGACAATTTGTCCCTTGCATATTACAATGTAGGCGCAGGACAAACACTTGCTCTTTCAATAAGAGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

698

Amino Acids

78.2

Weight (kDa)

5.31

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	36 - 89	5.1e-18	Surp module
Surp	PF01805	147 - 198	6.9e-17	Surp module
PRP21_like_P	PF12230	218 - 416	9.7e-48	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	627 - 693	1.1e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
Acc36I	ACCTGC	2 cut(s)	1321, 1532
AccB7I	CCANNNNNTGG	1 cut(s)	1487
AccI	GTMKAC	1 cut(s)	1627
AccIII	TCCGGA	1 cut(s)	1255
AciI	CCGC	6 cut(s)	584, 650, 842, 1712, 1729, 1745
AclWI	GGATC	3 cut(s)	191, 1033, 1133
AcoI	YGGCCR	3 cut(s)	258, 1363, 1730
AcsI	RAATTY	8 cut(s)	152, 203, 209, 217, 263, 1808, 1944, 1993
AcuI	CTGAAG	4 cut(s)	312, 656, 750, 1449
AdeI	CACNNNGTG	2 cut(s)	256, 1490
AfaI	GTAC	2 cut(s)	1546, 1635
AfiI	CCNNNNNNNGG	8 cut(s)	617, 856, 1032, 1082, 1083, 1487, 1831, 1966
AgeI	ACCGGT	1 cut(s)	1831
AgsI	TTSAA	9 cut(s)	217, 320, 565, 597, 854, 923, 959, 1788, 2067
AhdI	GACNNNNNGTC	1 cut(s)	2017
AhlI	ACTAGT	1 cut(s)	1190
AjnI	CCWGG	3 cut(s)	137, 1447, 1486
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
Alw21I	GWGCWC	2 cut(s)	331, 1119
Alw26I	GTCTC	4 cut(s)	1015, 1053, 1181, 1453
AlwI	GGATC	3 cut(s)	191, 1033, 1133
Ama87I	CYCGRG	2 cut(s)	1025, 1825
Aor13HI	TCCGGA	1 cut(s)	1255
AoxI	GGCC	3 cut(s)	258, 1363, 1730
ApeKI	GCWGC	5 cut(s)	764, 949, 1327, 1370, 1619
ApoI	RAATTY	8 cut(s)	152, 203, 209, 217, 263, 1808, 1944, 1993
AsiGI	ACCGGT	1 cut(s)	1831
AspLEI	GCGC	1 cut(s)	2045
AspS9I	GGNCC	3 cut(s)	146, 1451, 1829
AsuC2I	CCSGG	4 cut(s)	254, 1084, 1826, 1827
AsuII	TTCGAA	1 cut(s)	207
AvaI	CYCGRG	2 cut(s)	1025, 1825
AvaII	GGWCC	3 cut(s)	146, 1451, 1829
BaeGI	GKGCMC	2 cut(s)	274, 378
BbsI	GAAGAC	2 cut(s)	279, 731
Bbv12I	GWGCWC	2 cut(s)	331, 1119
BbvI	GCAGC	5 cut(s)	751, 961, 1339, 1382, 1631
BccI	CCATC	3 cut(s)	29, 668, 1337
BceAI	ACGGC	2 cut(s)	663, 1350
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	3 cut(s)	139, 1449, 1488
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	4 cut(s)	254, 1084, 1826, 1827
BcoDI	GTCTC	4 cut(s)	1015, 1053, 1181, 1453
BcuI	ACTAGT	1 cut(s)	1190
BfaI	CTAG	4 cut(s)	668, 1191, 1512, 1623
BfmI	CTRYAG	1 cut(s)	1617
BfuAI	ACCTGC	2 cut(s)	1321, 1532
BglII	AGATCT	1 cut(s)	1218
BisI	GCNGC	6 cut(s)	765, 950, 1328, 1371, 1620, 1730
BlpI	GCTNAGC	1 cut(s)	845
BlsI	GCNGC	6 cut(s)	766, 951, 1329, 1372, 1621, 1731
Bme1390I	CCNGG	7 cut(s)	139, 254, 1084, 1449, 1488, 1826, 1827
Bme18I	GGWCC	3 cut(s)	146, 1451, 1829
BmeRI	GACNNNNNGTC	1 cut(s)	2017
BmeT110I	CYCGRG	2 cut(s)	1025, 1825
BmgT120I	GGNCC	3 cut(s)	146, 1451, 1829
BmiI	GGNNCC	3 cut(s)	1270, 1442, 1830
BmrFI	CCNGG	7 cut(s)	139, 254, 1084, 1449, 1488, 1826, 1827
BmrI	ACTGGG	2 cut(s)	457, 523
BmsI	GCATC	7 cut(s)	87, 577, 597, 691, 936, 1692, 1848
BmuI	ACTGGG	2 cut(s)	457, 523
BpiI	GAAGAC	2 cut(s)	279, 731
BpmI	CTGGAG	3 cut(s)	78, 345, 710
Bpu10I	CCTNAGC	2 cut(s)	1206, 1758
Bpu1102I	GCTNAGC	1 cut(s)	845
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	402, 1207, 1862
BpuMI	CCSGG	4 cut(s)	254, 1084, 1826, 1827
BsaI	GGTCTC	2 cut(s)	1015, 1453
BsaJI	CCNNGG	3 cut(s)	1026, 1083, 1825
BsaWI	WCCGGW	4 cut(s)	148, 304, 1255, 1831
BsaXI	ACNNNNNCTCC	2 cut(s)	1582, 1612
Bsc4I	CCNNNNNNNGG	8 cut(s)	617, 856, 1032, 1082, 1083, 1487, 1831, 1966
Bse118I	RCCGGY	1 cut(s)	1831
Bse1I	ACTGG	6 cut(s)	444, 463, 529, 1019, 1047, 1366
BseAI	TCCGGA	1 cut(s)	1255
BseBI	CCWGG	3 cut(s)	139, 1449, 1488
BseDI	CCNNGG	3 cut(s)	1026, 1083, 1825
BseLI	CCNNNNNNNGG	8 cut(s)	617, 856, 1032, 1082, 1083, 1487, 1831, 1966
BseMII	CTCAG	5 cut(s)	836, 1104, 1220, 1296, 1644
BseNI	ACTGG	6 cut(s)	444, 463, 529, 1019, 1047, 1366
BseRI	GAGGAG	8 cut(s)	30, 78, 81, 828, 920, 1043, 1292, 1629
BseSI	GKGCMC	2 cut(s)	274, 378
BseXI	GCAGC	5 cut(s)	751, 961, 1339, 1382, 1631
BseYI	CCCAGC	2 cut(s)	273, 351
BsgI	GTGCAG	2 cut(s)	1389, 1925
Bsh1285I	CGRYCG	1 cut(s)	1836
BshFI	GGCC	3 cut(s)	260, 1365, 1732
BshTI	ACCGGT	1 cut(s)	1831
BsiEI	CGRYCG	1 cut(s)	1836
BsiHKAI	GWGCWC	2 cut(s)	331, 1119
BsiHKCI	CYCGRG	2 cut(s)	1025, 1825
BsiSI	CCGG	9 cut(s)	149, 253, 305, 1083, 1256, 1454, 1826, 1832, 1967
BslFI	GGGAC	4 cut(s)	1079, 1842, 1896, 2005
BslI	CCNNNNNNNGG	8 cut(s)	617, 856, 1032, 1082, 1083, 1487, 1831, 1966
BsmAI	GTCTC	4 cut(s)	1015, 1053, 1181, 1453
BsmFI	GGGAC	4 cut(s)	1079, 1842, 1896, 2005
BsmI	GAATGC	2 cut(s)	371, 1399
BsnI	GGCC	3 cut(s)	260, 1365, 1732
Bso31I	GGTCTC	2 cut(s)	1015, 1453
BsoBI	CYCGRG	2 cut(s)	1025, 1825
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1286I	GDGCHC	4 cut(s)	274, 331, 378, 1119
Bsp13I	TCCGGA	1 cut(s)	1255
Bsp143I	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
Bsp1720I	GCTNAGC	1 cut(s)	845
BspACI	CCGC	6 cut(s)	584, 650, 842, 1712, 1729, 1745
BspANI	GGCC	3 cut(s)	260, 1365, 1732
BspCNI	CTCAG	5 cut(s)	837, 1105, 1219, 1297, 1645
BspEI	TCCGGA	1 cut(s)	1255
BspLI	GGNNCC	3 cut(s)	1270, 1442, 1830
BspMAI	CTGCAG	1 cut(s)	1621
BspMI	ACCTGC	2 cut(s)	1321, 1532
BspPI	GGATC	3 cut(s)	191, 1033, 1133
BspQI	GCTCTTC	1 cut(s)	288
BspT104I	TTCGAA	1 cut(s)	207
BspTNI	GGTCTC	2 cut(s)	1015, 1453
BsrFI	RCCGGY	1 cut(s)	1831
BsrI	ACTGG	6 cut(s)	444, 463, 529, 1019, 1047, 1366
BssAI	RCCGGY	1 cut(s)	1831
BssECI	CCNNGG	3 cut(s)	1026, 1083, 1825
BssMI	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
BssNAI	GTATAC	1 cut(s)	1628
Bst1107I	GTATAC	1 cut(s)	1628
Bst2UI	CCWGG	3 cut(s)	139, 1449, 1488
Bst4CI	ACNGT	5 cut(s)	406, 675, 1531, 1903, 1924
Bst6I	CTCTTC	6 cut(s)	288, 390, 849, 936, 1013, 1482
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	300, 714, 1749
BstDEI	CTNAG	8 cut(s)	356, 845, 1113, 1176, 1206, 1305, 1653, 1758
BstEII	GGTNACC	1 cut(s)	1871
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	2045
BstKTI	GATC	6 cut(s)	199, 283, 1041, 1141, 1221, 1899
BstMAI	GTCTC	4 cut(s)	1015, 1053, 1181, 1453
BstMBI	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
BstMCI	CGRYCG	1 cut(s)	1836
BstMWI	GCNNNNNNNGC	7 cut(s)	718, 1301, 1324, 1379, 1711, 1726, 1774
BstNI	CCWGG	3 cut(s)	139, 1449, 1488
BstNSI	RCATGY	1 cut(s)	1751
BstPI	GGTNACC	1 cut(s)	1871
BstSCI	CCNGG	7 cut(s)	137, 252, 1082, 1447, 1486, 1824, 1825
BstSFI	CTRYAG	1 cut(s)	1617
BstSLI	GKGCMC	2 cut(s)	274, 378
BstV1I	GCAGC	5 cut(s)	751, 961, 1339, 1382, 1631
BstV2I	GAAGAC	2 cut(s)	279, 731
BstX2I	RGATCY	2 cut(s)	196, 1218
BstXI	CCANNNNNNTGG	1 cut(s)	1672
BstYI	RGATCY	2 cut(s)	196, 1218
BstZ17I	GTATAC	1 cut(s)	1628
BsuRI	GGCC	3 cut(s)	260, 1365, 1732
BtsI	GCAGTG	1 cut(s)	1561
BtsIMutI	CAGTG	5 cut(s)	171, 1054, 1359, 1561, 1908
BveI	ACCTGC	2 cut(s)	1321, 1532
Cac8I	GCNNGC	3 cut(s)	300, 714, 1749
CfoI	GCGC	1 cut(s)	2045
Cfr10I	RCCGGY	1 cut(s)	1831
Cfr13I	GGNCC	3 cut(s)	146, 1451, 1829
Cfr9I	CCCGGG	1 cut(s)	1825
CsiI	ACCWGGT	1 cut(s)	1486
Csp6I	GTAC	2 cut(s)	1545, 1634
CspAI	ACCGGT	1 cut(s)	1831
CspCI	CAANNNNNGTGG	2 cut(s)	1698, 1733
CviQI	GTAC	2 cut(s)	1545, 1634
DdeI	CTNAG	8 cut(s)	356, 845, 1113, 1176, 1206, 1305, 1653, 1758
DpnI	GATC	6 cut(s)	198, 282, 1040, 1140, 1220, 1898
DpnII	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
DraIII	CACNNNGTG	2 cut(s)	256, 1490
DriI	GACNNNNNGTC	1 cut(s)	2017
EaeI	YGGCCR	3 cut(s)	258, 1363, 1730
Eam1104I	CTCTTC	6 cut(s)	288, 390, 849, 936, 1013, 1482
Eam1105I	GACNNNNNGTC	1 cut(s)	2017
EarI	CTCTTC	6 cut(s)	288, 390, 849, 936, 1013, 1482
EciI	GGCGGA	2 cut(s)	599, 665
Eco31I	GGTCTC	2 cut(s)	1015, 1453
Eco47I	GGWCC	3 cut(s)	146, 1451, 1829
Eco57I	CTGAAG	4 cut(s)	312, 656, 750, 1449
Eco88I	CYCGRG	2 cut(s)	1025, 1825
Eco91I	GGTNACC	1 cut(s)	1871
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	1871
EcoRI	GAATTC	2 cut(s)	217, 263
EcoRII	CCWGG	3 cut(s)	137, 1447, 1486
EcoT22I	ATGCAT	2 cut(s)	241, 592
FaqI	GGGAC	4 cut(s)	1079, 1842, 1896, 2005
FauNDI	CATATG	1 cut(s)	1337
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	1627
Fnu4HI	GCNGC	6 cut(s)	765, 950, 1328, 1371, 1620, 1730
Fsp4HI	GCNGC	6 cut(s)	765, 950, 1328, 1371, 1620, 1730
FspBI	CTAG	4 cut(s)	668, 1191, 1512, 1623
GlaI	GCGC	1 cut(s)	2044
GluI	GCNGC	6 cut(s)	765, 950, 1328, 1371, 1620, 1730
GsaI	CCCAGC	2 cut(s)	277, 355
GsuI	CTGGAG	3 cut(s)	78, 345, 710
HaeIII	GGCC	3 cut(s)	260, 1365, 1732
HapII	CCGG	9 cut(s)	149, 253, 305, 1083, 1256, 1454, 1826, 1832, 1967
HhaI	GCGC	1 cut(s)	2045
Hin6I	GCGC	1 cut(s)	2043
HinP1I	GCGC	1 cut(s)	2043
HindIII	AAGCTT	1 cut(s)	1775
HinfI	GANTC	3 cut(s)	341, 1180, 1784
HpaII	CCGG	9 cut(s)	149, 253, 305, 1083, 1256, 1454, 1826, 1832, 1967
Hpy166II	GTNNAC	5 cut(s)	402, 1237, 1426, 1628, 1659
Hpy188I	TCNGA	7 cut(s)	292, 477, 1114, 1654, 1918, 1935, 2007
Hpy188III	TCNNGA	8 cut(s)	95, 194, 1184, 1208, 1224, 1256, 1799, 1998
Hpy8I	GTNNAC	5 cut(s)	402, 1237, 1426, 1628, 1659
HpyAV	CCTTC	6 cut(s)	157, 611, 956, 1454, 1473, 1862
HpyCH4III	ACNGT	5 cut(s)	406, 675, 1531, 1903, 1924
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	7 cut(s)	718, 1301, 1324, 1379, 1711, 1726, 1774
HpyF3I	CTNAG	8 cut(s)	356, 845, 1113, 1176, 1206, 1305, 1653, 1758
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	2043
Kpn2I	TCCGGA	1 cut(s)	1255
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	7 cut(s)	43, 307, 326, 697, 870, 907, 1087
Lsp1109I	GCAGC	5 cut(s)	751, 961, 1339, 1382, 1631
LweI	GCATC	7 cut(s)	87, 577, 597, 691, 936, 1692, 1848
MabI	ACCWGGT	1 cut(s)	1486
MaeI	CTAG	4 cut(s)	668, 1191, 1512, 1623
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	5 cut(s)	52, 753, 973, 1386, 1871
MalI	GATC	6 cut(s)	198, 282, 1040, 1140, 1220, 1898
MboI	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	2 cut(s)	196, 1218
MhlI	GDGCHC	4 cut(s)	274, 331, 378, 1119
MmeI	TCCRAC	1 cut(s)	912
Mph1103I	ATGCAT	2 cut(s)	241, 592
MroI	TCCGGA	1 cut(s)	1255
MseI	TTAA	3 cut(s)	1299, 1503, 1584
MslI	CAYNNNNRTG	3 cut(s)	783, 915, 1670
MspA1I	CMGCKG	1 cut(s)	844
MspI	CCGG	9 cut(s)	149, 253, 305, 1083, 1256, 1454, 1826, 1832, 1967
MspR9I	CCNGG	7 cut(s)	139, 254, 1084, 1449, 1488, 1826, 1827
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	2 cut(s)	371, 1399
MvaI	CCWGG	3 cut(s)	139, 1449, 1488
MwoI	GCNNNNNNNGC	7 cut(s)	718, 1301, 1324, 1379, 1711, 1726, 1774
NciI	CCSGG	4 cut(s)	254, 1084, 1826, 1827
NdeI	CATATG	1 cut(s)	1337
NdeII	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
NlaIV	GGNNCC	3 cut(s)	1270, 1442, 1830
NmuCI	GTSAC	1 cut(s)	1386
NsiI	ATGCAT	2 cut(s)	241, 592
NspI	RCATGY	1 cut(s)	1751
NspV	TTCGAA	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	1751
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	2 cut(s)	371, 1399
PfeI	GAWTC	3 cut(s)	341, 1180, 1784
PflMI	CCANNNNNTGG	1 cut(s)	1487
PfoI	TCCNGGA	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	1831
PkrI	GCNGC	6 cut(s)	766, 951, 1329, 1372, 1621, 1731
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	3 cut(s)	137, 1447, 1486
PspEI	GGTNACC	1 cut(s)	1871
PspFI	CCCAGC	2 cut(s)	273, 351
PspGI	CCWGG	3 cut(s)	137, 1447, 1486
PspN4I	GGNNCC	3 cut(s)	1270, 1442, 1830
PspPI	GGNCC	3 cut(s)	146, 1451, 1829
PstI	CTGCAG	1 cut(s)	1621
PsuI	RGATCY	2 cut(s)	196, 1218
RsaI	GTAC	2 cut(s)	1546, 1635
RsaNI	GTAC	2 cut(s)	1545, 1634
RseI	CAYNNNNRTG	3 cut(s)	783, 915, 1670
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	1299, 1503, 1584
SatI	GCNGC	6 cut(s)	765, 950, 1328, 1371, 1620, 1730
Sau3AI	GATC	6 cut(s)	196, 280, 1038, 1138, 1218, 1896
Sau96I	GGNCC	3 cut(s)	146, 1451, 1829
ScrFI	CCNGG	7 cut(s)	139, 254, 1084, 1449, 1488, 1826, 1827
SduI	GDGCHC	4 cut(s)	274, 331, 378, 1119
SexAI	ACCWGGT	1 cut(s)	1486
SfaNI	GCATC	7 cut(s)	87, 577, 597, 691, 936, 1692, 1848
SfcI	CTRYAG	1 cut(s)	1617
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	3 cut(s)	146, 1451, 1829
SmaI	CCCGGG	1 cut(s)	1827
SmiMI	CAYNNNNRTG	3 cut(s)	783, 915, 1670
SmlI	CTYRAG	3 cut(s)	417, 1222, 1877
SmoI	CTYRAG	3 cut(s)	417, 1222, 1877
SpeI	ACTAGT	1 cut(s)	1190
SphI	GCATGC	1 cut(s)	1751
SsiI	CCGC	6 cut(s)	584, 650, 842, 1712, 1729, 1745
SspMI	CTAG	4 cut(s)	668, 1191, 1512, 1623
StyD4I	CCNGG	7 cut(s)	137, 252, 1082, 1447, 1486, 1824, 1825
TaaI	ACNGT	5 cut(s)	406, 675, 1531, 1903, 1924
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	207, 795, 903
TauI	GCSGC	1 cut(s)	1732
TfiI	GAWTC	3 cut(s)	341, 1180, 1784
Tru1I	TTAA	3 cut(s)	1299, 1503, 1584
Tru9I	TTAA	3 cut(s)	1299, 1503, 1584
TscAI	CASTG	5 cut(s)	178, 1054, 1366, 1561, 1908
TseFI	GTSAC	1 cut(s)	1386
TseI	GCWGC	5 cut(s)	764, 949, 1327, 1370, 1619
Tsp45I	GTSAC	1 cut(s)	1386
TspDTI	ATGAA	5 cut(s)	398, 464, 951, 983, 1881
TspGWI	ACGGA	2 cut(s)	257, 1590
TspMI	CCCGGG	1 cut(s)	1825
TspRI	CASTG	5 cut(s)	178, 1054, 1366, 1561, 1908
Van91I	CCANNNNNTGG	1 cut(s)	1487
VpaK11BI	GGWCC	3 cut(s)	146, 1451, 1829
XagI	CCTNNNNNAGG	1 cut(s)	854
XapI	RAATTY	8 cut(s)	152, 203, 209, 217, 263, 1808, 1944, 1993
XceI	RCATGY	1 cut(s)	1751
XmaI	CCCGGG	1 cut(s)	1825
XmiI	GTMKAC	1 cut(s)	1627
XspI	CTAG	4 cut(s)	668, 1191, 1512, 1623
Zsp2I	ATGCAT	2 cut(s)	241, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.