Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006645

Physical Location & Seq

Genomic Coordinates Reverse (-)

5206793 .. 5209838

Gene Structure 3046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46673

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCTCGGCCTCTTAGAAGAGATATCCTTGAACCAAGCTTCACTTGTTAGCTCTCAAATGGAACCTACTACCCAAATGGCTCATGACCAGCAACAACCAAAATGGGAAGGCGAGGCTAGGGCAGAGCTAATAGGCCCTAAAGCAGAACAAGTGTGGCCTTTGTTGGAGGACTTCTTCGGCCTACACAAGTGGTTCCCAACCCTAACCACTTGCCTTCCTGTACAAGGCGTATCCGGTCAACCAGGGTGCGTGCGCTATTGCGCCGGATTCAAAACTCCGGTTGATCATGAAAGCAACCAGCCGGAGCATCTGAACTGGACTAAGCAGGAGCTACTGTCCATAGACCCAAGCCAGCTGACGTTTAGCTATTCCATTGTAGACGGGAATGTCGGGTTCAACTCGTACATTTCGACTGTGCGAGTGGTGCCGAAGGAAGATGGATGCATCATTGAGTGGAAGTATGAGGTTGAGCCAGTGGAGGGGTGGACACTGAAGGATCTGGACGTGTTTATAGGCACTGGTTTGCAAGTCATGGCTCGCAGAATGGAAGCTAGCCTCTCCAAACTCCAACGACAACCGAAATGGGAAGGCAAGGCTACTGCAGAGCTACGAGGTCCAAAAGCAGAACAAGTGTGGCCTTTGCTGGAGGACTTCTTCGGCCTACACAAGTGGTTCCCAACCCTCCCCACTTGCCTTCCTGTGCAAGGCGTATCCGGGCAGCCAGGCTGCGTGCGCTACTGCGCCGGAATTAAGACTCCGGTTGATCGCGAAAGCGACGGGCTAGAGCATGTGAACTGGTCTAAGCAGCAGCTACTGTCCATAGACCCAAGCCAGCTGACCTATAGCTATTCCATTATAGATGGGAATATTGGGTTCAACTCGTACATTGCAACCATACGAGTGTTGCCCAAGGAAGATGGGTGCAGCATTGAGTGGAAGTATGAGGTTGAGCCAATTGAGGGGTGGACACTGATGAATCTTGACATGCTTATCGCCCTGGTTTGCAACTTATGGCGAGAAAAATGGAAGCTAGCCTTGGTCAGTATAAAGTTTGAGCTCTGTTTCTGTAGGGGACTTAGTTGGTCTGAAATTCTAAATTGGGCTCTTTTCATTGTGTGTTTACTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

376

Amino Acids

42.73

Weight (kDa)

4.99

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	47 - 191	2.7e-19	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc2	PF10604	207 - 323	2.3e-16	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25770 AT2G25770
fragaria_vesca	FvH4_1g05920
malus_domestica	MD02G1061100.v1.1 MD02G1061300.v1.1 MD02G1064000.v1.1 MD08G1112000.v1.1 MD08G1112100.v1.1
prunus_persica	Prupe.7G221700_v2.0.a1
pyrus_communis	pycom08g09310 pycom15g17420
rosa_chinensis	RchiOBHm_Chr2g0091561 RchiOBHm_Chr2g0091641
rosa_laevigata	RLG00000016237 RLG00000016238
rosa_multiflora	Rmu_sc0000897.1_g000017
rosa_roxburghii	Rroxscaffold_2G00149890 Rroxscaffold_2G00149910
rosa_rugosa	Rorug02G0018700
rosa_samantha	Rh2AG064000 Rh2AG064100 Rh2BG063400 Rh2CG065100 Rh2DG063500
rosa_wichuraiana	Rw2G005630 Rw2G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	1 cut(s)	768
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	1089
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	3 cut(s)	222, 404, 884
AfiI	CCNNNNNNNGG	4 cut(s)	224, 479, 704, 959
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	31, 271, 397, 877
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	3 cut(s)	241, 721, 996
AjuI	GAANNNNNNNTTGG	2 cut(s)	1019, 1051
Alw21I	GWGCWC	1 cut(s)	1059
AlwI	GGATC	1 cut(s)	504
AlwNI	CAGNNNCTG	1 cut(s)	814
AoxI	GGCC	6 cut(s)	7, 133, 155, 178, 635, 658
ApeKI	GCWGC	5 cut(s)	718, 726, 805, 808, 924
ApoI	RAATTY	1 cut(s)	1089
AspLEI	GCGC	4 cut(s)	255, 263, 735, 743
AspS9I	GGNCC	2 cut(s)	134, 614
AsuC2I	CCSGG	1 cut(s)	715
AsuNHI	GCTAGC	2 cut(s)	551, 1030
AvaII	GGWCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	1059, 1105
Bbv12I	GWGCWC	1 cut(s)	1059
BbvI	GCAGC	5 cut(s)	713, 730, 817, 820, 936
BccI	CCATC	3 cut(s)	431, 854, 911
BciT130I	CCWGG	3 cut(s)	243, 723, 998
BciVI	GTATCC	2 cut(s)	241, 721
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	715
BfaI	CTAG	4 cut(s)	117, 552, 782, 1031
BfmI	CTRYAG	3 cut(s)	600, 841, 1066
BfuI	GTATCC	2 cut(s)	241, 721
BisI	GCNGC	5 cut(s)	719, 727, 806, 809, 925
BlsI	GCNGC	5 cut(s)	720, 728, 807, 810, 926
Bme1390I	CCNGG	4 cut(s)	243, 715, 723, 998
Bme18I	GGWCC	1 cut(s)	614
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	134, 614
BmiI	GGNNCC	4 cut(s)	63, 194, 426, 674
BmrFI	CCNGG	4 cut(s)	243, 715, 723, 998
BmsI	GCATC	3 cut(s)	316, 431, 453
BmtI	GCTAGC	2 cut(s)	555, 1034
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	715
BsaJI	CCNNGG	4 cut(s)	242, 909, 996, 1035
BsaWI	WCCGGW	3 cut(s)	233, 277, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 479, 704, 959
Bse1I	ACTGG	4 cut(s)	320, 473, 523, 800
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	3 cut(s)	243, 723, 998
BseDI	CCNNGG	4 cut(s)	242, 909, 996, 1035
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	224, 479, 704, 959
BseMI	GCAATG	1 cut(s)	885
BseNI	ACTGG	4 cut(s)	320, 473, 523, 800
BseXI	GCAGC	5 cut(s)	713, 730, 817, 820, 936
BsgI	GTGCAG	1 cut(s)	943
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	6 cut(s)	9, 135, 157, 180, 637, 660
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	1059
BsiSI	CCGG	7 cut(s)	234, 264, 278, 302, 714, 744, 758
BslFI	GGGAC	1 cut(s)	1086
BslI	CCNNNNNNNGG	4 cut(s)	224, 479, 704, 959
BsmFI	GGGAC	1 cut(s)	1086
BsnI	GGCC	6 cut(s)	9, 135, 157, 180, 637, 660
Bsp1286I	GDGCHC	2 cut(s)	1059, 1105
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	283, 496, 763
Bsp68I	TCGCGA	1 cut(s)	768
BspANI	GGCC	6 cut(s)	9, 135, 157, 180, 637, 660
BspFNI	CGCG	1 cut(s)	768
BspHI	TCATGA	2 cut(s)	82, 286
BspLI	GGNNCC	4 cut(s)	63, 194, 426, 674
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	2 cut(s)	555, 1034
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	885
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	320, 473, 523, 800
BssECI	CCNNGG	4 cut(s)	242, 909, 996, 1035
BssMI	GATC	3 cut(s)	283, 496, 763
BssT1I	CCWWGG	2 cut(s)	909, 1035
Bst2UI	CCWGG	3 cut(s)	243, 723, 998
Bst4CI	ACNGT	3 cut(s)	336, 415, 816
Bst6I	CTCTTC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	7 cut(s)	251, 353, 538, 553, 731, 833, 1032
BstDEI	CTNAG	4 cut(s)	13, 321, 801, 1076
BstENI	CCTNNNNNAGG	2 cut(s)	222, 702
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	768
BstHHI	GCGC	4 cut(s)	255, 263, 735, 743
BstKTI	GATC	3 cut(s)	286, 499, 766
BstMBI	GATC	3 cut(s)	283, 496, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 732
BstNI	CCWGG	3 cut(s)	243, 723, 998
BstNSI	RCATGY	2 cut(s)	791, 988
BstSCI	CCNGG	4 cut(s)	241, 713, 721, 996
BstSFI	CTRYAG	3 cut(s)	600, 841, 1066
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	5 cut(s)	713, 730, 817, 820, 936
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	2 cut(s)	241, 721
BsuRI	GGCC	6 cut(s)	9, 135, 157, 180, 637, 660
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	4 cut(s)	480, 488, 516, 968
BtuMI	TCGCGA	1 cut(s)	768
Cac8I	GCNNGC	7 cut(s)	251, 353, 538, 553, 731, 833, 1032
CaiI	CAGNNNCTG	1 cut(s)	814
CciI	TCATGA	2 cut(s)	82, 286
CfoI	GCGC	4 cut(s)	255, 263, 735, 743
Cfr13I	GGNCC	2 cut(s)	134, 614
Csp6I	GTAC	3 cut(s)	221, 403, 883
CviAII	CATG	5 cut(s)	83, 287, 532, 788, 985
CviQI	GTAC	3 cut(s)	221, 403, 883
DdeI	CTNAG	4 cut(s)	13, 321, 801, 1076
DpnI	GATC	3 cut(s)	285, 498, 765
DpnII	GATC	3 cut(s)	283, 496, 763
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	1057
Eco130I	CCWWGG	2 cut(s)	909, 1035
Eco24I	GRGCYC	2 cut(s)	1059, 1105
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	1057
EcoNI	CCTNNNNNAGG	2 cut(s)	222, 702
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	3 cut(s)	241, 721, 996
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	909, 1035
EcoT22I	ATGCAT	1 cut(s)	446
EcoT38I	GRGCYC	2 cut(s)	1059, 1105
ErhI	CCWWGG	2 cut(s)	909, 1035
FaeI	CATG	5 cut(s)	86, 290, 535, 791, 988
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 1019, 1051
FaqI	GGGAC	1 cut(s)	1086
FatI	CATG	5 cut(s)	82, 286, 531, 787, 984
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	719, 727, 806, 809, 925
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	2 cut(s)	1059, 1105
Fsp4HI	GCNGC	5 cut(s)	719, 727, 806, 809, 925
FspBI	CTAG	4 cut(s)	117, 552, 782, 1031
GlaI	GCGC	4 cut(s)	254, 262, 734, 742
GluI	GCNGC	5 cut(s)	719, 727, 806, 809, 925
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	6 cut(s)	9, 135, 157, 180, 637, 660
HapII	CCGG	7 cut(s)	234, 264, 278, 302, 714, 744, 758
HhaI	GCGC	4 cut(s)	255, 263, 735, 743
Hin1II	CATG	5 cut(s)	86, 290, 535, 791, 988
Hin6I	GCGC	4 cut(s)	253, 261, 733, 741
HinP1I	GCGC	4 cut(s)	253, 261, 733, 741
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	3 cut(s)	267, 754, 976
HpaII	CCGG	7 cut(s)	234, 264, 278, 302, 714, 744, 758
Hpy166II	GTNNAC	6 cut(s)	239, 379, 486, 793, 966, 1121
Hpy188I	TCNGA	2 cut(s)	312, 1087
Hpy188III	TCNNGA	5 cut(s)	83, 287, 500, 767, 980
Hpy8I	GTNNAC	6 cut(s)	239, 379, 486, 793, 966, 1121
Hpy99I	CGWCG	1 cut(s)	779
HpyAV	CCTTC	6 cut(s)	101, 224, 424, 487, 581, 704
HpyCH4III	ACNGT	3 cut(s)	336, 415, 816
HpyCH4IV	ACGT	2 cut(s)	359, 504
HpyCH4V	TGCA	7 cut(s)	444, 526, 602, 703, 890, 924, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 732
HpyF3I	CTNAG	4 cut(s)	13, 321, 801, 1076
HpySE526I	ACGT	2 cut(s)	359, 504
Hsp92II	CATG	5 cut(s)	86, 290, 535, 791, 988
HspAI	GCGC	4 cut(s)	253, 261, 733, 741
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	283, 496, 763
LmnI	GCTCC	2 cut(s)	304, 328
Lsp1109I	GCAGC	5 cut(s)	713, 730, 817, 820, 936
LweI	GCATC	3 cut(s)	316, 431, 453
MaeI	CTAG	4 cut(s)	117, 552, 782, 1031
MaeII	ACGT	2 cut(s)	359, 504
MalI	GATC	3 cut(s)	285, 498, 765
MboI	GATC	3 cut(s)	283, 496, 763
MboII	GAAGA	5 cut(s)	29, 166, 446, 646, 926
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	1059, 1105
MluCI	AATT	4 cut(s)	747, 954, 1089, 1096
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	2 cut(s)	144, 592
Mph1103I	ATGCAT	1 cut(s)	446
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	2 cut(s)	355, 835
MspI	CCGG	7 cut(s)	234, 264, 278, 302, 714, 744, 758
MspR9I	CCNGG	4 cut(s)	243, 715, 723, 998
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	3 cut(s)	243, 723, 998
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	424, 732
NciI	CCSGG	1 cut(s)	715
NdeII	GATC	3 cut(s)	283, 496, 763
NheI	GCTAGC	2 cut(s)	551, 1030
NlaIII	CATG	5 cut(s)	86, 290, 535, 791, 988
NlaIV	GGNNCC	4 cut(s)	63, 194, 426, 674
NruI	TCGCGA	1 cut(s)	768
NsiI	ATGCAT	1 cut(s)	446
NspI	RCATGY	2 cut(s)	791, 988
PagI	TCATGA	2 cut(s)	82, 286
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	267, 976
PkrI	GCNGC	5 cut(s)	720, 728, 807, 810, 926
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	1059
Psp6I	CCWGG	3 cut(s)	241, 721, 996
PspGI	CCWGG	3 cut(s)	241, 721, 996
PspN4I	GGNNCC	4 cut(s)	63, 194, 426, 674
PspPI	GGNCC	2 cut(s)	134, 614
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	2 cut(s)	355, 835
RruI	TCGCGA	1 cut(s)	768
RsaI	GTAC	3 cut(s)	222, 404, 884
RsaNI	GTAC	3 cut(s)	221, 403, 883
RseI	CAYNNNNRTG	1 cut(s)	899
SacI	GAGCTC	1 cut(s)	1059
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	5 cut(s)	719, 727, 806, 809, 925
Sau3AI	GATC	3 cut(s)	283, 496, 763
Sau96I	GGNCC	2 cut(s)	134, 614
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	4 cut(s)	243, 715, 723, 998
SduI	GDGCHC	2 cut(s)	1059, 1105
SfaNI	GCATC	3 cut(s)	316, 431, 453
SfcI	CTRYAG	3 cut(s)	600, 841, 1066
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	899
Sse9I	AATT	4 cut(s)	747, 954, 1089, 1096
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	4 cut(s)	117, 552, 782, 1031
SstI	GAGCTC	1 cut(s)	1059
StyD4I	CCNGG	4 cut(s)	241, 713, 721, 996
StyI	CCWWGG	2 cut(s)	909, 1035
TaaI	ACNGT	3 cut(s)	336, 415, 816
TaiI	ACGT	2 cut(s)	362, 507
TaqI	TCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	747, 954, 1089, 1096
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	267, 976
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	4 cut(s)	480, 495, 523, 975
TseI	GCWGC	5 cut(s)	718, 726, 805, 808, 924
TspDTI	ATGAA	3 cut(s)	303, 989, 1099
TspRI	CASTG	4 cut(s)	480, 495, 523, 975
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	2 cut(s)	222, 702
XapI	RAATTY	1 cut(s)	1089
XceI	RCATGY	2 cut(s)	791, 988
XcmI	CCANNNNNNNNNTGG	2 cut(s)	480, 960
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	4 cut(s)	117, 552, 782, 1031
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.