RLG00000016237

Lachrymatory-factor synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006645
Physical Location & Seq
Reverse (-)
4970964 .. 4973395
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016237

Sequence Viewer

Length: 612 bp
ATGGCTCATGACCAGCAACAACCAAAATGGGAAGGCGAGGCTAGGGCAGAGCTAATAGGCCCTAAAGCAGAACAAGTGTGGCCTTTGTTGGAGGACTTCTTCGGCCTACACAAGTGGTTCCCAACCCTAACCACTTGCCTTCCTGTACAAGGCGTATCCGGTCAACCAGGGTGCGTGCGCTATTGCGCCGGATTCAAAACTCCGGTTGATCATGAAAGCAACCAGCCGGAGCATCTGAACTGGACTAAGCAGGAGCTACTGTCCATAGACCCAAGCCAGCTGACGTTTAGCTATTCCATTGTAGACGGGAATGTCGGGTTCAACTCGTACATTTCGACTGTGCGAGTGGTGCCGAAGGAAGATGGATGCAGCATTGAGTGGAAGTATGAGGTTGAGCCAGTGGAGGGGTGGACACTGAAGGATCTGGACGTGTTTATAGGCACTGGCAAGGCTACTGCAGAGCTACGAGGTCCAAAAGCAGAACAAGTGTGGCCTTTGCTGGAGGACTTCTTCGGCCTACACAAGTGGTTCCCAACCGTCCCCACTTGCCTTCCTGCATGTGCAAGGCGTATCCGGGCAGCCAAGCTGCGTGCGCTACTGCGCCAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

204

Amino Acids

22.97

Weight (kDa)

5.76

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 22 - 142 2.6e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 303
AclWI GGATC 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 2 cut(s) 147, 329
AfiI CCNNNNNNNGG 2 cut(s) 149, 404
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 2 cut(s) 196, 322
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 6 cut(s) 52, 256, 280, 291, 463, 586
AluI AGCT 6 cut(s) 52, 256, 280, 291, 463, 586
AlwI GGATC 1 cut(s) 429
AoxI GGCC 5 cut(s) 58, 80, 103, 491, 514
ApeKI GCWGC 3 cut(s) 369, 578, 586
AspLEI GCGC 4 cut(s) 180, 188, 595, 603
AspS9I GGNCC 2 cut(s) 59, 470
AsuC2I CCSGG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 381, 573, 590
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 2 cut(s) 166, 581
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 575
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 456
BfuI GTATCC 2 cut(s) 166, 581
BisI GCNGC 3 cut(s) 370, 579, 587
BlsI GCNGC 3 cut(s) 371, 580, 588
Bme1390I CCNGG 2 cut(s) 168, 575
Bme18I GGWCC 1 cut(s) 470
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 59, 470
BmiI GGNNCC 3 cut(s) 119, 351, 530
BmrFI CCNGG 2 cut(s) 168, 575
BmsI GCATC 2 cut(s) 241, 356
BpmI CTGGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 2 cut(s) 158, 202
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 404
Bse1I ACTGG 3 cut(s) 245, 398, 448
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 2 cut(s) 149, 404
BseNI ACTGG 3 cut(s) 245, 398, 448
BseXI GCAGC 3 cut(s) 381, 573, 590
BshFI GGCC 5 cut(s) 60, 82, 105, 493, 516
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 5 cut(s) 159, 189, 203, 227, 574
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 149, 404
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 5 cut(s) 60, 82, 105, 493, 516
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 2 cut(s) 208, 421
BspANI GGCC 5 cut(s) 60, 82, 105, 493, 516
BspHI TCATGA 2 cut(s) 7, 211
BspLI GGNNCC 3 cut(s) 119, 351, 530
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 349
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 3 cut(s) 245, 398, 448
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 208, 421
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 261, 340, 538
BstAUI TGTACA 1 cut(s) 145
BstC8I GCNNGC 3 cut(s) 176, 278, 591
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 371
BstHHI GCGC 4 cut(s) 180, 188, 595, 603
BstKTI GATC 2 cut(s) 211, 424
BstMBI GATC 2 cut(s) 208, 421
BstMWI GCNNNNNNNGC 2 cut(s) 349, 592
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 166, 573
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 381, 573, 590
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuI GTATCC 2 cut(s) 166, 581
BsuRI GGCC 5 cut(s) 60, 82, 105, 493, 516
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 1 cut(s) 371
BtsIMutI CAGTG 3 cut(s) 405, 413, 441
Cac8I GCNNGC 3 cut(s) 176, 278, 591
CciI TCATGA 2 cut(s) 7, 211
CfoI GCGC 4 cut(s) 180, 188, 595, 603
Cfr13I GGNCC 2 cut(s) 59, 470
Csp6I GTAC 2 cut(s) 146, 328
CviAII CATG 3 cut(s) 8, 212, 558
CviQI GTAC 2 cut(s) 146, 328
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 210, 423
DpnII GATC 2 cut(s) 208, 421
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 3 cut(s) 11, 215, 561
FaiI YATR 6 cut(s) 9, 213, 266, 387, 437, 559
FaqI GGGAC 1 cut(s) 524
FatI CATG 3 cut(s) 7, 211, 557
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 370, 579, 587
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 3 cut(s) 370, 579, 587
FspBI CTAG 1 cut(s) 42
GlaI GCGC 4 cut(s) 179, 187, 594, 602
GluI GCNGC 3 cut(s) 370, 579, 587
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 5 cut(s) 60, 82, 105, 493, 516
HapII CCGG 5 cut(s) 159, 189, 203, 227, 574
HhaI GCGC 4 cut(s) 180, 188, 595, 603
Hin1II CATG 3 cut(s) 11, 215, 561
Hin6I GCGC 4 cut(s) 178, 186, 593, 601
HinP1I GCGC 4 cut(s) 178, 186, 593, 601
HincII GTYRAC 1 cut(s) 164
HindII GTYRAC 1 cut(s) 164
HinfI GANTC 1 cut(s) 192
HpaII CCGG 5 cut(s) 159, 189, 203, 227, 574
Hpy166II GTNNAC 3 cut(s) 164, 304, 411
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 3 cut(s) 8, 212, 425
Hpy8I GTNNAC 3 cut(s) 164, 304, 411
HpyAV CCTTC 5 cut(s) 26, 149, 349, 412, 560
HpyCH4III ACNGT 3 cut(s) 261, 340, 538
HpyCH4IV ACGT 2 cut(s) 284, 429
HpyCH4V TGCA 4 cut(s) 369, 458, 557, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 592
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 2 cut(s) 284, 429
Hsp92II CATG 3 cut(s) 11, 215, 561
HspAI GCGC 4 cut(s) 178, 186, 593, 601
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 421
LmnI GCTCC 2 cut(s) 229, 253
Lsp1109I GCAGC 3 cut(s) 381, 573, 590
LweI GCATC 2 cut(s) 241, 356
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 284, 429
MalI GATC 2 cut(s) 210, 423
MboI GATC 2 cut(s) 208, 421
MboII GAAGA 3 cut(s) 91, 371, 502
MflI RGATCY 1 cut(s) 421
MluCI AATT 1 cut(s) 607
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 31, 85, 382, 397, 461, 496
MseI TTAA 1 cut(s) 610
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 5 cut(s) 159, 189, 203, 227, 574
MspR9I CCNGG 2 cut(s) 168, 575
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 349, 592
NciI CCSGG 1 cut(s) 575
NdeII GATC 2 cut(s) 208, 421
NlaIII CATG 3 cut(s) 11, 215, 561
NlaIV GGNNCC 3 cut(s) 119, 351, 530
NspI RCATGY 1 cut(s) 561
PagI TCATGA 2 cut(s) 7, 211
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 3 cut(s) 371, 580, 588
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 3 cut(s) 119, 351, 530
PspPI GGNCC 2 cut(s) 59, 470
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 147, 329
RsaNI GTAC 2 cut(s) 146, 328
SaqAI TTAA 1 cut(s) 610
SatI GCNGC 3 cut(s) 370, 579, 587
Sau3AI GATC 2 cut(s) 208, 421
Sau96I GGNCC 2 cut(s) 59, 470
ScrFI CCNGG 2 cut(s) 168, 575
SfaNI GCATC 2 cut(s) 241, 356
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 470
Sse9I AATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 166, 573
TaaI ACNGT 3 cut(s) 261, 340, 538
TaiI ACGT 2 cut(s) 287, 432
TaqI TCGA 1 cut(s) 335
TasI AATT 1 cut(s) 607
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 610
Tru9I TTAA 1 cut(s) 610
TscAI CASTG 3 cut(s) 405, 420, 448
TseI GCWGC 3 cut(s) 369, 578, 586
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 3 cut(s) 405, 420, 448
VpaK11BI GGWCC 1 cut(s) 470
XagI CCTNNNNNAGG 1 cut(s) 147
XceI RCATGY 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.