Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006645

Physical Location & Seq

Genomic Coordinates Reverse (-)

4687153 .. 4701432

Gene Structure 14280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG063500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTCATGACCAGCAACAACCAAAATGGGAAGGCGAGGCTAGGGCAGAGCTAATAGGCCCTAAAGCAGAACAAGTGTGGCCTTTGTTGGAGGACTTCTTCGGCCTACACAAGTGGTTCCCAACCCTAACCACTTGCCTTCCTGTAAAAGGCGTATCCGGTCAACCAGGGTGCGTGCGCTATTGCGCCGGATTCAAAACTCCGGTTGATCATGAAAGCAACCAGCCGGAGCATCTGAACTGGACTAAGCAGGAGCTACTGTCCATAGACCCAAGCCAGATGACGTTTAGCTATTCCATTGTAGACGGGAATGTCGGGTTCAACTCGTACATTTCGACTGTGCGAGTGGTGCCAAAGGAAGATGGATGCAGCATTGAGTGGAAGTATGAGGTTGAGCCAGTGGAGGGGTGGACACTGAAGGATCTGGACGTGTTTATAGGCACTGGTTTGCAAGTCATGGCTAGCAGAATGGAAGCTAGCCTCTCCAAACTCCAACGACAACCGAAATGGGAAGGCAAGGCTACTGCAGAGCTACGAGGTCCAAAAGCAGAACAAGTGTGGCCTTTGCTGGAGGACTTCTTCGGCCTACATAAGTGGTTCCCAACCCTCCCCACTTGCCTTCCTGTGCAAGGCGTATCCGGGCAGCCAGGTTGTGTGCGCTACTGCGCCGGAATTAAGACTCCGGTTGATCACGAAAGCGACCGGCTAGAGCATGTGAACTGGTCTAAGCAGCAGCTACTGTCCATAGACCCAAGCCAGCTGAACTATAGCTATTCCATTATAGATGGGAATATTGGGTTCAACTCGTACATTGCAACCATACGAGTGTTGCCCAAGGAAGATGGGTGCAGCATTGTGTGGAAGTATGAGGTTGAGCCAATTGAGGGGTGGACACTGATGGATCTTGACATGCTTATCGGCCCTGGTTTGCAACTTATGCCTTATGGCCAGAAAAATGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

321

Amino Acids

36.15

Weight (kDa)

5.09

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	22 - 165	3.8e-20	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc2	PF10604	182 - 299	4.5e-16	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25770 AT2G25770
fragaria_vesca	FvH4_1g05920
malus_domestica	MD02G1061100.v1.1 MD02G1061300.v1.1 MD02G1064000.v1.1 MD08G1112000.v1.1 MD08G1112100.v1.1
prunus_persica	Prupe.7G221700_v2.0.a1
pyrus_communis	pycom08g09310 pycom15g17420
rosa_chinensis	RchiOBHm_Chr2g0091561 RchiOBHm_Chr2g0091641
rosa_laevigata	RLG00000016237 RLG00000016238
rosa_multiflora	Rmu_sc0000897.1_g000017
rosa_roxburghii	Rroxscaffold_2G00149890 Rroxscaffold_2G00149910
rosa_rugosa	Rorug02G0018700
rosa_samantha	Rh2AG064000 Rh2AG064100 Rh2BG063400 Rh2CG065100 Rh2DG063500
rosa_wichuraiana	Rw2G005630 Rw2G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	303
AclWI	GGATC	2 cut(s)	429, 909
AcoI	YGGCCR	1 cut(s)	946
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	329, 809
AfiI	CCNNNNNNNGG	4 cut(s)	149, 404, 629, 884
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	196, 322, 802
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	3 cut(s)	166, 646, 922
AluBI	AGCT	9 cut(s)	52, 256, 291, 476, 532, 736, 760, 771, 963
AluI	AGCT	9 cut(s)	52, 256, 291, 476, 532, 736, 760, 771, 963
AlwI	GGATC	2 cut(s)	429, 909
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	7 cut(s)	58, 80, 103, 560, 583, 919, 946
ApeKI	GCWGC	5 cut(s)	369, 643, 730, 733, 849
AspLEI	GCGC	4 cut(s)	180, 188, 660, 668
AspS9I	GGNCC	3 cut(s)	59, 539, 920
AsuC2I	CCSGG	1 cut(s)	640
AsuNHI	GCTAGC	2 cut(s)	461, 476
AvaII	GGWCC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	948
BanI	GGYRCC	1 cut(s)	349
BbvI	GCAGC	5 cut(s)	381, 655, 742, 745, 861
BccI	CCATC	4 cut(s)	356, 779, 836, 892
BciT130I	CCWGG	3 cut(s)	168, 648, 924
BciVI	GTATCC	2 cut(s)	166, 646
BclI	TGATCA	2 cut(s)	208, 688
BcnI	CCSGG	1 cut(s)	640
BfaI	CTAG	5 cut(s)	42, 462, 477, 707, 964
BfmI	CTRYAG	2 cut(s)	525, 766
BfuI	GTATCC	2 cut(s)	166, 646
BisI	GCNGC	5 cut(s)	370, 644, 731, 734, 850
BlsI	GCNGC	5 cut(s)	371, 645, 732, 735, 851
Bme1390I	CCNGG	4 cut(s)	168, 640, 648, 924
Bme18I	GGWCC	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	3 cut(s)	59, 539, 920
BmiI	GGNNCC	3 cut(s)	119, 351, 599
BmrFI	CCNGG	4 cut(s)	168, 640, 648, 924
BmsI	GCATC	2 cut(s)	241, 356
BmtI	GCTAGC	2 cut(s)	465, 480
BpmI	CTGGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	167, 834, 922
BsaWI	WCCGGW	3 cut(s)	158, 202, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 404, 629, 884
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	4 cut(s)	245, 398, 448, 725
Bse3DI	GCAATG	1 cut(s)	810
BseBI	CCWGG	3 cut(s)	168, 648, 924
BseDI	CCNNGG	3 cut(s)	167, 834, 922
BseGI	GGATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	4 cut(s)	149, 404, 629, 884
BseMI	GCAATG	1 cut(s)	810
BseNI	ACTGG	4 cut(s)	245, 398, 448, 725
BseXI	GCAGC	5 cut(s)	381, 655, 742, 745, 861
BsgI	GTGCAG	1 cut(s)	868
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	7 cut(s)	60, 82, 105, 562, 585, 921, 948
BshNI	GGYRCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	703
BsiSI	CCGG	8 cut(s)	159, 189, 203, 227, 639, 669, 683, 703
BslI	CCNNNNNNNGG	4 cut(s)	149, 404, 629, 884
BsnI	GGCC	7 cut(s)	60, 82, 105, 562, 585, 921, 948
Bsp143I	GATC	4 cut(s)	208, 421, 688, 901
BspANI	GGCC	7 cut(s)	60, 82, 105, 562, 585, 921, 948
BspHI	TCATGA	2 cut(s)	7, 211
BspLI	GGNNCC	3 cut(s)	119, 351, 599
BspMAI	CTGCAG	1 cut(s)	529
BspOI	GCTAGC	2 cut(s)	465, 480
BspPI	GGATC	2 cut(s)	429, 909
BspT107I	GGYRCC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	702
BsrI	ACTGG	4 cut(s)	245, 398, 448, 725
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	3 cut(s)	167, 834, 922
BssMI	GATC	4 cut(s)	208, 421, 688, 901
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	3 cut(s)	168, 648, 924
Bst4CI	ACNGT	3 cut(s)	261, 340, 741
BstAPI	GCANNNNNTGC	1 cut(s)	937
BstC8I	GCNNGC	4 cut(s)	176, 463, 478, 758
BstDEI	CTNAG	2 cut(s)	246, 726
BstENI	CCTNNNNNAGG	2 cut(s)	147, 627
BstF5I	GGATG	1 cut(s)	371
BstHHI	GCGC	4 cut(s)	180, 188, 660, 668
BstKTI	GATC	4 cut(s)	211, 424, 691, 904
BstMBI	GATC	4 cut(s)	208, 421, 688, 901
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 937
BstNI	CCWGG	3 cut(s)	168, 648, 924
BstNSI	RCATGY	2 cut(s)	716, 913
BstSCI	CCNGG	4 cut(s)	166, 638, 646, 922
BstSFI	CTRYAG	2 cut(s)	525, 766
BstV1I	GCAGC	5 cut(s)	381, 655, 742, 745, 861
BstX2I	RGATCY	2 cut(s)	421, 901
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	2 cut(s)	421, 901
BsuI	GTATCC	2 cut(s)	166, 646
BsuRI	GGCC	7 cut(s)	60, 82, 105, 562, 585, 921, 948
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	4 cut(s)	405, 413, 441, 893
Cac8I	GCNNGC	4 cut(s)	176, 463, 478, 758
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	2 cut(s)	7, 211
CfoI	GCGC	4 cut(s)	180, 188, 660, 668
Cfr10I	RCCGGY	1 cut(s)	702
Cfr13I	GGNCC	3 cut(s)	59, 539, 920
Csp6I	GTAC	2 cut(s)	328, 808
CviAII	CATG	5 cut(s)	8, 212, 457, 713, 910
CviQI	GTAC	2 cut(s)	328, 808
DdeI	CTNAG	2 cut(s)	246, 726
DpnI	GATC	4 cut(s)	210, 423, 690, 903
DpnII	GATC	4 cut(s)	208, 421, 688, 901
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	946
Eco130I	CCWWGG	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	2 cut(s)	147, 627
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	166, 646, 922
EcoT14I	CCWWGG	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	5 cut(s)	11, 215, 460, 716, 913
FatI	CATG	5 cut(s)	7, 211, 456, 712, 909
FbaI	TGATCA	2 cut(s)	208, 688
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	370, 644, 731, 734, 850
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	5 cut(s)	370, 644, 731, 734, 850
FspBI	CTAG	5 cut(s)	42, 462, 477, 707, 964
GlaI	GCGC	4 cut(s)	179, 187, 659, 667
GluI	GCNGC	5 cut(s)	370, 644, 731, 734, 850
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	7 cut(s)	60, 82, 105, 562, 585, 921, 948
HapII	CCGG	8 cut(s)	159, 189, 203, 227, 639, 669, 683, 703
HhaI	GCGC	4 cut(s)	180, 188, 660, 668
Hin1II	CATG	5 cut(s)	11, 215, 460, 716, 913
Hin6I	GCGC	4 cut(s)	178, 186, 658, 666
HinP1I	GCGC	4 cut(s)	178, 186, 658, 666
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	2 cut(s)	192, 679
HpaII	CCGG	8 cut(s)	159, 189, 203, 227, 639, 669, 683, 703
Hpy166II	GTNNAC	5 cut(s)	164, 304, 411, 718, 891
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	5 cut(s)	8, 212, 425, 692, 905
Hpy8I	GTNNAC	5 cut(s)	164, 304, 411, 718, 891
HpyAV	CCTTC	5 cut(s)	26, 149, 412, 506, 629
HpyCH4III	ACNGT	3 cut(s)	261, 340, 741
HpyCH4IV	ACGT	2 cut(s)	284, 429
HpyCH4V	TGCA	7 cut(s)	369, 451, 527, 628, 815, 849, 931
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 937
HpyF3I	CTNAG	2 cut(s)	246, 726
HpySE526I	ACGT	2 cut(s)	284, 429
Hsp92II	CATG	5 cut(s)	11, 215, 460, 716, 913
HspAI	GCGC	4 cut(s)	178, 186, 658, 666
Ksp22I	TGATCA	2 cut(s)	208, 688
Kzo9I	GATC	4 cut(s)	208, 421, 688, 901
LmnI	GCTCC	2 cut(s)	229, 253
Lsp1109I	GCAGC	5 cut(s)	381, 655, 742, 745, 861
LweI	GCATC	2 cut(s)	241, 356
MaeI	CTAG	5 cut(s)	42, 462, 477, 707, 964
MaeII	ACGT	2 cut(s)	284, 429
MalI	GATC	4 cut(s)	210, 423, 690, 903
MboI	GATC	4 cut(s)	208, 421, 688, 901
MboII	GAAGA	4 cut(s)	91, 371, 571, 851
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	2 cut(s)	421, 901
MlsI	TGGCCA	1 cut(s)	948
MluCI	AATT	2 cut(s)	672, 879
MluNI	TGGCCA	1 cut(s)	948
MlyI	GAGTC	1 cut(s)	673
MmeI	TCCRAC	2 cut(s)	69, 517
Mox20I	TGGCCA	1 cut(s)	948
MscI	TGGCCA	1 cut(s)	948
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	824
Msp20I	TGGCCA	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	760
MspI	CCGG	8 cut(s)	159, 189, 203, 227, 639, 669, 683, 703
MspR9I	CCNGG	4 cut(s)	168, 640, 648, 924
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	3 cut(s)	168, 648, 924
MwoI	GCNNNNNNNGC	2 cut(s)	349, 937
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	4 cut(s)	208, 421, 688, 901
NheI	GCTAGC	2 cut(s)	461, 476
NlaIII	CATG	5 cut(s)	11, 215, 460, 716, 913
NlaIV	GGNNCC	3 cut(s)	119, 351, 599
NspI	RCATGY	2 cut(s)	716, 913
PagI	TCATGA	2 cut(s)	7, 211
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	371, 645, 732, 735, 851
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Psp6I	CCWGG	3 cut(s)	166, 646, 922
PspGI	CCWGG	3 cut(s)	166, 646, 922
PspN4I	GGNNCC	3 cut(s)	119, 351, 599
PspPI	GGNCC	3 cut(s)	59, 539, 920
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	2 cut(s)	421, 901
PvuII	CAGCTG	1 cut(s)	760
RsaI	GTAC	2 cut(s)	329, 809
RsaNI	GTAC	2 cut(s)	328, 808
RseI	CAYNNNNRTG	1 cut(s)	824
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	5 cut(s)	370, 644, 731, 734, 850
Sau3AI	GATC	4 cut(s)	208, 421, 688, 901
Sau96I	GGNCC	3 cut(s)	59, 539, 920
SchI	GAGTC	1 cut(s)	673
ScrFI	CCNGG	4 cut(s)	168, 640, 648, 924
SfaNI	GCATC	2 cut(s)	241, 356
SfcI	CTRYAG	2 cut(s)	525, 766
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	824
Sse9I	AATT	2 cut(s)	672, 879
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	5 cut(s)	42, 462, 477, 707, 964
StyD4I	CCNGG	4 cut(s)	166, 638, 646, 922
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	3 cut(s)	261, 340, 741
TaiI	ACGT	2 cut(s)	287, 432
TaqI	TCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	672, 879
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	4 cut(s)	405, 420, 448, 900
TseI	GCWGC	5 cut(s)	369, 643, 730, 733, 849
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	405, 420, 448, 900
VpaK11BI	GGWCC	1 cut(s)	539
XagI	CCTNNNNNAGG	2 cut(s)	147, 627
XceI	RCATGY	2 cut(s)	716, 913
XcmI	CCANNNNNNNNNTGG	2 cut(s)	405, 885
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	5 cut(s)	42, 462, 477, 707, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.