Rh2AG064000

Lachrymatory-factor synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006645
Physical Location & Seq
Reverse (-)
5270041 .. 5270406
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG064000.1

Sequence Viewer

Length: 366 bp
ATGGAACATACTACCCAAATATTGTCTCATGACCATCGACAACCGAAATGGGAAGGCAAGGCTACTGCAGAGCTACGAGGTCCAAAAGCAGAACAAGTGTCGCCTTTGCTGGAGGACTTCTTCGGCCTACACAAGTGGTTCCCAACCCCCCCCACTTGCCTTCCTGTGCAAGGCGTATCCGGGCAGCAAGGCTGCGTGCGCTACTGCGCCGGAATTAAGACTCCGATTGATCGCGAAAGCGACCGGCTAGAGCATGTGAACTGGTCTAAGCAGCAGCTACTGTCCATAGACCCAAGCCAGCTGACCTATAGCTATTCCATTATAGATGGGAATATTGGGTTCAACTCGTACATTGCAACCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

6.17

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 29 - 120 5.4e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 343
AluBI AGCT 4 cut(s) 73, 277, 301, 312
AluI AGCT 4 cut(s) 73, 277, 301, 312
Alw26I GTCTC 1 cut(s) 30
AlwNI CAGNNNCTG 1 cut(s) 280
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 4 cut(s) 184, 192, 271, 274
AspLEI GCGC 2 cut(s) 201, 209
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 181
AvaII GGWCC 1 cut(s) 80
BbvI GCAGC 4 cut(s) 179, 196, 283, 286
BccI CCATC 2 cut(s) 42, 320
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 2 cut(s) 66, 307
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 4 cut(s) 185, 193, 272, 275
BlsI GCNGC 4 cut(s) 186, 194, 273, 276
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 4 cut(s) 179, 196, 283, 286
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 180, 210, 244
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 229
Bsp68I TCGCGA 1 cut(s) 234
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 243
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 197, 299
BstDEI CTNAG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 2 cut(s) 201, 209
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 229
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 66, 307
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 4 cut(s) 179, 196, 283, 286
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 126
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 197, 299
CaiI CAGNNNCTG 1 cut(s) 280
CciI TCATGA 1 cut(s) 28
CfoI GCGC 2 cut(s) 201, 209
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 29, 254
CviJI RGCY 9 cut(s) 62, 73, 126, 192, 247, 277, 297, 301, 312
CviKI_1 RGCY 9 cut(s) 62, 73, 126, 192, 247, 277, 297, 301, 312
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 168
FaeI CATG 2 cut(s) 32, 257
FaiI YATR 8 cut(s) 9, 30, 255, 287, 309, 323, 362, 364
FatI CATG 2 cut(s) 28, 253
FauNDI CATATG 1 cut(s) 362
Fnu4HI GCNGC 4 cut(s) 185, 193, 272, 275
Fsp4HI GCNGC 4 cut(s) 185, 193, 272, 275
FspBI CTAG 1 cut(s) 248
GlaI GCGC 2 cut(s) 200, 208
GluI GCNGC 4 cut(s) 185, 193, 272, 275
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 126
HapII CCGG 3 cut(s) 180, 210, 244
HhaI GCGC 2 cut(s) 201, 209
Hin1II CATG 2 cut(s) 32, 257
Hin6I GCGC 2 cut(s) 199, 207
HinP1I GCGC 2 cut(s) 199, 207
HinfI GANTC 1 cut(s) 220
HpaII CCGG 3 cut(s) 180, 210, 244
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 29, 233
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 47, 170
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 68, 169, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 32, 257
HspAI GCGC 2 cut(s) 199, 207
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 7 cut(s) 95, 177, 193, 223, 247, 257, 311
Lsp1109I GCAGC 4 cut(s) 179, 196, 283, 286
MaeI CTAG 1 cut(s) 248
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 112
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 2 cut(s) 71, 106
MseI TTAA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 180, 210, 244
MspR9I CCNGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 362
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 32, 257
NlaIV GGNNCC 1 cut(s) 140
NruI TCGCGA 1 cut(s) 234
NspI RCATGY 1 cut(s) 257
PagI TCATGA 1 cut(s) 28
PkrI GCNGC 4 cut(s) 186, 194, 273, 276
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 80
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 301
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 4 cut(s) 185, 193, 272, 275
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 181
SetI ASST 6 cut(s) 75, 82, 279, 303, 308, 314
SfcI CTRYAG 2 cut(s) 66, 307
SinI GGWCC 1 cut(s) 80
Sse9I AATT 1 cut(s) 213
SspI AATATT 2 cut(s) 21, 334
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 213
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 4 cut(s) 184, 192, 271, 274
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 168
XceI RCATGY 1 cut(s) 257
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.