RchiOBHm_Chr3g0455011

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008144
Physical Location & Seq
Forward (+)
4849757 .. 4850997
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42200

Sequence Viewer

Length: 1146 bp
ATGCTCTCTCCTTCACAGCTTGCTAAATCAAAGTCATTTAGTATCAGAGAGCCCTCATTGTTATATACTGGGTGTATTACTGCAATGGCTTTTCAAAATAACCTTGTTATAGTTGCCATTTTATCTATCATCTTGGGGGCAATGGCACAACCCCCAGCCACGTCCAACGATGAATTTGATCCCTCTACATTTTTTAAAACATTTGAGCAATGGATGGCACAGTTCGGACGCACTTACATTGACAATGGAGAGAAAGAAAGGCGTCTCACCATGTTCGCGAAGAACATGCTATTTGTAAATAACTTCAACAGCCAACGGAATAAGACTTACAAGTTAAGAGTCAACTTGTTTTCTGATATGTCCAATGAAGAATTTCTCGGACTTTACACTGGATTTCAAGCTCCCAATGTCACCTTAAACTCAAGCTCATTCCGAGGACAACGTAATATGAAATCTTTTAGGTACCAAGACCTGTCTGAAACTGATGTTCCAACTAGAATTGACTGGAGGGAACAAGGTGCCGTTACCCCCGTCAAGGAACAAGGACAATGCAGTTCTTGTTGGGCATTTTCAGCAGTGGCAGCAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAACGGTTATGAAATGGTTCCTCCCAACAGCGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTCGCCCTTGATGCCGATGGAGCTGAATTTAGGGCATACGCAAGTGGGGTATTTTCTGGTAATTGCGGGACAAAACTAACCCATGCTGTTACAATCGTTGGGTACGGAACGACTGAAGAAGGCACCAACTATTGGTTAGTGAAGAATTCATGGGGCGAAACCTGGGGTGAAAAGGGCTACATGAGAATTCTTCGAAATGCTGGTCCTCCAGGAGGTTTGTGTGGCATTGCTATGTACCCTTCTTATCCAACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

381

Amino Acids

42.19

Weight (kDa)

5.39

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 68 - 125 1.1e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 163 - 380 6.6e-81 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 3 cut(s) 462, 518, 1010
AccB7I CCANNNNNTGG 1 cut(s) 1020
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 681, 954
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 870
AcsI RAATTY 5 cut(s) 173, 371, 914, 1033, 1074
AcuI CTGAAG 1 cut(s) 1023
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 3 cut(s) 464, 992, 1124
AfiI CCNNNNNNNGG 4 cut(s) 535, 760, 1020, 1100
AflIII ACRYGT 1 cut(s) 776
AgsI TTSAA 3 cut(s) 95, 307, 398
AhlI ACTAGT 1 cut(s) 737
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 2 cut(s) 1049, 1096
AluBI AGCT 4 cut(s) 19, 401, 426, 911
AluI AGCT 4 cut(s) 19, 401, 426, 911
Alw26I GTCTC 3 cut(s) 269, 767, 889
AlwI GGATC 1 cut(s) 173
AoxI GGCC 2 cut(s) 864, 870
ApeKI GCWGC 3 cut(s) 581, 678, 806
ApoI RAATTY 5 cut(s) 173, 371, 914, 1033, 1074
ArsI GACNNNNNNTTYG 2 cut(s) 1075, 1107
Asp700I GAANNNNTTC 2 cut(s) 372, 831
Asp718I GGTACC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 1091
AsuHPI GGTGA 3 cut(s) 259, 403, 1067
AsuII TTCGAA 1 cut(s) 1081
AvaII GGWCC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 872
BanI GGYRCC 3 cut(s) 462, 518, 1010
BanII GRGCYC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 593, 665, 793
BccI CCATC 2 cut(s) 208, 899
BceAI ACGGC 2 cut(s) 506, 851
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 2 cut(s) 1051, 1098
BcoDI GTCTC 3 cut(s) 269, 767, 889
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 2 cut(s) 495, 738
BisI GCNGC 3 cut(s) 582, 679, 807
BlsI GCNGC 3 cut(s) 583, 680, 808
Bme1390I CCNGG 2 cut(s) 1051, 1098
Bme18I GGWCC 1 cut(s) 1091
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 1091
BmiI GGNNCC 4 cut(s) 464, 520, 834, 1012
BmrFI CCNGG 2 cut(s) 1051, 1098
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 691, 889
BmuI ACTGGG 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 526, 1080
Bpu14I TTCGAA 1 cut(s) 1081
BpuEI CTTGAG 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 433, 867, 1050
Bsc4I CCNNNNNNNGG 4 cut(s) 535, 760, 1020, 1100
Bse1I ACTGG 4 cut(s) 73, 394, 509, 881
Bse3DI GCAATG 4 cut(s) 90, 147, 215, 1113
BseBI CCWGG 2 cut(s) 1051, 1098
BseDI CCNNGG 3 cut(s) 433, 867, 1050
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 535, 760, 1020, 1100
BseMI GCAATG 4 cut(s) 90, 147, 215, 1113
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 4 cut(s) 73, 394, 509, 881
BseXI GCAGC 3 cut(s) 593, 665, 793
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 2 cut(s) 866, 872
BshNI GGYRCC 3 cut(s) 462, 518, 1010
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 4 cut(s) 535, 760, 1020, 1100
BsmAI GTCTC 3 cut(s) 269, 767, 889
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 970
BsnI GGCC 2 cut(s) 866, 872
Bsp119I TTCGAA 1 cut(s) 1081
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 3 cut(s) 178, 661, 853
Bsp68I TCGCGA 1 cut(s) 278
BspACI CCGC 2 cut(s) 681, 954
BspANI GGCC 2 cut(s) 866, 872
BspCNI CTCAG 1 cut(s) 899
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 4 cut(s) 464, 520, 834, 1012
BspPI GGATC 1 cut(s) 173
BspT104I TTCGAA 1 cut(s) 1081
BspT107I GGYRCC 3 cut(s) 462, 518, 1010
BsrDI GCAATG 4 cut(s) 90, 147, 215, 1113
BsrI ACTGG 4 cut(s) 73, 394, 509, 881
BssECI CCNNGG 3 cut(s) 433, 867, 1050
BssMI GATC 3 cut(s) 178, 661, 853
BssNI GRCGYC 1 cut(s) 262
Bst2UI CCWGG 2 cut(s) 1051, 1098
Bst4CI ACNGT 4 cut(s) 222, 630, 653, 821
Bst6I CTCTTC 1 cut(s) 765
BstACI GRCGYC 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 789, 886
BstDSI CCRYGG 1 cut(s) 867
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 3 cut(s) 181, 664, 856
BstMAI GTCTC 3 cut(s) 269, 767, 889
BstMBI GATC 3 cut(s) 178, 661, 853
BstMWI GCNNNNNNNGC 4 cut(s) 572, 581, 899, 908
BstNI CCWGG 2 cut(s) 1051, 1098
BstNSI RCATGY 2 cut(s) 289, 780
BstSCI CCNGG 2 cut(s) 1049, 1096
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 593, 665, 793
BsuRI GGCC 2 cut(s) 866, 872
BtgI CCRYGG 1 cut(s) 867
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 3 cut(s) 387, 582, 626
BtuMI TCGCGA 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 1091
CseI GACGC 2 cut(s) 237, 251
Csp6I GTAC 3 cut(s) 463, 991, 1123
CviAII CATG 6 cut(s) 271, 286, 777, 971, 1038, 1069
CviQI GTAC 3 cut(s) 463, 991, 1123
DdeI CTNAG 2 cut(s) 789, 886
DpnI GATC 3 cut(s) 180, 663, 855
DpnII GATC 3 cut(s) 178, 661, 853
DraI TTTAAA 2 cut(s) 196, 709
EaeI YGGCCR 1 cut(s) 870
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 1091
Eco57I CTGAAG 1 cut(s) 1023
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoRI GAATTC 2 cut(s) 1033, 1074
EcoRII CCWGG 2 cut(s) 1049, 1096
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 6 cut(s) 274, 289, 780, 974, 1041, 1072
FaqI GGGAC 1 cut(s) 970
FatI CATG 6 cut(s) 270, 285, 776, 970, 1037, 1068
FauI CCCGC 1 cut(s) 947
Fnu4HI GCNGC 3 cut(s) 582, 679, 807
FokI GGATG 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 582, 679, 807
FspBI CTAG 2 cut(s) 495, 738
GluI GCNGC 3 cut(s) 582, 679, 807
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 2 cut(s) 526, 1080
HaeIII GGCC 2 cut(s) 866, 872
HgaI GACGC 2 cut(s) 237, 251
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 6 cut(s) 274, 289, 780, 974, 1041, 1072
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 339, 732
HphI GGTGA 3 cut(s) 259, 403, 1067
Hpy166II GTNNAC 2 cut(s) 343, 649
Hpy188I TCNGA 7 cut(s) 47, 227, 355, 380, 434, 478, 634
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 2 cut(s) 343, 649
HpyAV CCTTC 3 cut(s) 21, 1001, 1137
HpyCH4III ACNGT 4 cut(s) 222, 630, 653, 821
HpyCH4IV ACGT 2 cut(s) 161, 442
HpyCH4V TGCA 4 cut(s) 83, 552, 767, 1142
HpyF10VI GCNNNNNNNGC 4 cut(s) 572, 581, 899, 908
HpyF3I CTNAG 2 cut(s) 789, 886
HpySE526I ACGT 2 cut(s) 161, 442
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 6 cut(s) 274, 289, 780, 974, 1041, 1072
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 178, 661, 853
LmnI GCTCC 2 cut(s) 406, 908
Lsp1109I GCAGC 3 cut(s) 593, 665, 793
LweI GCATC 2 cut(s) 691, 889
MaeI CTAG 2 cut(s) 495, 738
MaeII ACGT 2 cut(s) 161, 442
MaeIII GTNAC 6 cut(s) 409, 523, 611, 653, 779, 976
MalI GATC 3 cut(s) 180, 663, 855
MboI GATC 3 cut(s) 178, 661, 853
MboII GAAGA 8 cut(s) 292, 380, 710, 755, 782, 1016, 1042, 1070
MfeI CAATTG 2 cut(s) 585, 617
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 872
MluNI TGGCCA 1 cut(s) 872
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 2 cut(s) 189, 515
MnlI CCTC 9 cut(s) 64, 193, 428, 501, 583, 722, 846, 1094, 1104
Mox20I TGGCCA 1 cut(s) 872
MroXI GAANNNNTTC 2 cut(s) 372, 831
MscI TGGCCA 1 cut(s) 872
MseI TTAA 5 cut(s) 195, 335, 416, 669, 708
MslI CAYNNNNRTG 1 cut(s) 1118
Msp20I TGGCCA 1 cut(s) 872
MspR9I CCNGG 2 cut(s) 1051, 1098
MunI CAATTG 2 cut(s) 585, 617
MvaI CCWGG 2 cut(s) 1051, 1098
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 4 cut(s) 572, 581, 899, 908
NdeII GATC 3 cut(s) 178, 661, 853
NlaIII CATG 6 cut(s) 274, 289, 780, 974, 1041, 1072
NlaIV GGNNCC 4 cut(s) 464, 520, 834, 1012
NmuCI GTSAC 2 cut(s) 409, 779
NruI TCGCGA 1 cut(s) 278
NspI RCATGY 2 cut(s) 289, 780
NspV TTCGAA 1 cut(s) 1081
PciI ACATGT 1 cut(s) 776
PdmI GAANNNNTTC 2 cut(s) 372, 831
PfeI GAWTC 1 cut(s) 732
PflMI CCANNNNNTGG 1 cut(s) 1020
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 3 cut(s) 583, 680, 808
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 776
Psp6I CCWGG 2 cut(s) 1049, 1096
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 1049, 1096
PspN4I GGNNCC 4 cut(s) 464, 520, 834, 1012
PspPI GGNCC 1 cut(s) 1091
RruI TCGCGA 1 cut(s) 278
RsaI GTAC 3 cut(s) 464, 992, 1124
RsaNI GTAC 3 cut(s) 463, 991, 1123
RseI CAYNNNNRTG 1 cut(s) 1118
SaqAI TTAA 5 cut(s) 195, 335, 416, 669, 708
SatI GCNGC 3 cut(s) 582, 679, 807
Sau3AI GATC 3 cut(s) 178, 661, 853
Sau96I GGNCC 1 cut(s) 1091
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 1051, 1098
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 2 cut(s) 691, 889
SfuI TTCGAA 1 cut(s) 1081
SinI GGWCC 1 cut(s) 1091
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SpeI ACTAGT 1 cut(s) 737
SsiI CCGC 2 cut(s) 681, 954
SspMI CTAG 2 cut(s) 495, 738
StyD4I CCNGG 2 cut(s) 1049, 1096
TaaI ACNGT 4 cut(s) 222, 630, 653, 821
TaiI ACGT 2 cut(s) 164, 445
TaqI TCGA 1 cut(s) 1081
TfiI GAWTC 1 cut(s) 732
Tru1I TTAA 5 cut(s) 195, 335, 416, 669, 708
Tru9I TTAA 5 cut(s) 195, 335, 416, 669, 708
TscAI CASTG 3 cut(s) 394, 582, 633
TseFI GTSAC 2 cut(s) 409, 779
TseI GCWGC 3 cut(s) 581, 678, 806
Tsp45I GTSAC 2 cut(s) 409, 779
TspDTI ATGAA 5 cut(s) 186, 381, 464, 840, 1026
TspGWI ACGGA 3 cut(s) 331, 741, 1008
TspRI CASTG 3 cut(s) 394, 582, 633
Van91I CCANNNNNTGG 1 cut(s) 1020
VpaK11BI GGWCC 1 cut(s) 1091
XagI CCTNNNNNAGG 1 cut(s) 1098
XapI RAATTY 5 cut(s) 173, 371, 914, 1033, 1074
XceI RCATGY 2 cut(s) 289, 780
XmnI GAANNNNTTC 2 cut(s) 372, 831
XspI CTAG 2 cut(s) 495, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.