RLG00000025390

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008144
Physical Location & Seq
Reverse (-)
45493158 .. 45494060
903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025390

Sequence Viewer

Length: 804 bp
ATGAGCAATGAAGAATTTCTTGGACTTTACACGGGATTTCAAGCTCCCAATGTCACCTTAAACTCAAGCTCATTCCGTGGACAACGTAATATCAAATCTTTTAGGTACCAAGACCTGTCTGAAACTGATGTTCCGACTAGAATTGACTGGAGGGAACAAGGTGCCGTTACCCCCTTCAAGGAACAAGGACAATGCCGTTCTTGTTGGGCATTTTCAGCAGTGGCAACAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTATCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCATGATAAACGGTTATGAAATGGTTCCTCCCAATAGCGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTTGCCCTTGATGCCGATGGAGATGAATTTAGGGCATACACAAGTGGGGTATTTTCTGGTAATTGCGGGAAAAACCTAACCCATGTTGTTACAATCGTTGGGTACGGAGGAACTGAAGAAGGCACCAACTATTCATGGGGCGAAACCTGGGGTGAAAAGGGCTACATGAGAATTCTTCGAAATGCTGGTCCTCCAGGAGGTTTGTGTGGCATTGCTATGTACCCTTCTTATCCAACTGCATCAGCTATGGCACTCGCTCCCTCATCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

268

Amino Acids

29.09

Weight (kDa)

4.73

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 44 - 256 8.8e-71 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 105
AccB1I GGYRCC 3 cut(s) 105, 161, 653
AciI CCGC 2 cut(s) 324, 597
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 3 cut(s) 14, 557, 702
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 3 cut(s) 107, 635, 752
AfiI CCNNNNNNNGG 3 cut(s) 178, 403, 728
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 2 cut(s) 41, 178
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 2 cut(s) 677, 724
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 3 cut(s) 44, 69, 776
AluI AGCT 3 cut(s) 44, 69, 776
Alw26I GTCTC 2 cut(s) 410, 532
AoxI GGCC 2 cut(s) 507, 513
ApeKI GCWGC 2 cut(s) 321, 449
ApoI RAATTY 3 cut(s) 14, 557, 702
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
Asp700I GAANNNNTTC 2 cut(s) 15, 474
Asp718I GGTACC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 2 cut(s) 46, 695
AsuII TTCGAA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 719
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 3 cut(s) 105, 161, 653
BbvI GCAGC 2 cut(s) 308, 436
BccI CCATC 1 cut(s) 542
BceAI ACGGC 3 cut(s) 149, 180, 494
BciT130I CCWGG 2 cut(s) 679, 726
BcoDI GTCTC 2 cut(s) 410, 532
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 138, 381
BisI GCNGC 2 cut(s) 322, 450
BlsI GCNGC 2 cut(s) 323, 451
Bme1390I CCNGG 2 cut(s) 679, 726
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 4 cut(s) 107, 163, 477, 655
BmrFI CCNGG 2 cut(s) 679, 726
BmsI GCATC 3 cut(s) 334, 532, 779
BpmI CTGGAG 2 cut(s) 169, 708
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 76, 510, 678
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 403, 728
Bse1I ACTGG 2 cut(s) 152, 524
Bse3DI GCAATG 2 cut(s) 13, 741
BseBI CCWGG 2 cut(s) 679, 726
BseDI CCNNGG 3 cut(s) 76, 510, 678
BseLI CCNNNNNNNGG 3 cut(s) 178, 403, 728
BseMI GCAATG 2 cut(s) 13, 741
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 152, 524
BseXI GCAGC 2 cut(s) 308, 436
BsgI GTGCAG 1 cut(s) 429
BshFI GGCC 2 cut(s) 509, 515
BshNI GGYRCC 3 cut(s) 105, 161, 653
BslI CCNNNNNNNGG 3 cut(s) 178, 403, 728
BsmAI GTCTC 2 cut(s) 410, 532
BsnI GGCC 2 cut(s) 509, 515
Bsp119I TTCGAA 1 cut(s) 709
Bsp143I GATC 2 cut(s) 304, 496
BspACI CCGC 2 cut(s) 324, 597
BspANI GGCC 2 cut(s) 509, 515
BspCNI CTCAG 1 cut(s) 542
BspLI GGNNCC 4 cut(s) 107, 163, 477, 655
BspT104I TTCGAA 1 cut(s) 709
BspT107I GGYRCC 3 cut(s) 105, 161, 653
BsrDI GCAATG 2 cut(s) 13, 741
BsrI ACTGG 2 cut(s) 152, 524
BssECI CCNNGG 3 cut(s) 76, 510, 678
BssMI GATC 2 cut(s) 304, 496
Bst2UI CCWGG 2 cut(s) 679, 726
Bst4CI ACNGT 2 cut(s) 296, 464
Bst6I CTCTTC 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 709
BstDEI CTNAG 2 cut(s) 432, 529
BstDSI CCRYGG 2 cut(s) 76, 510
BstENI CCTNNNNNAGG 1 cut(s) 726
BstKTI GATC 2 cut(s) 307, 499
BstMAI GTCTC 2 cut(s) 410, 532
BstMBI GATC 2 cut(s) 304, 496
BstMWI GCNNNNNNNGC 2 cut(s) 215, 542
BstNI CCWGG 2 cut(s) 679, 726
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 677, 724
BstV1I GCAGC 2 cut(s) 308, 436
BsuRI GGCC 2 cut(s) 509, 515
BtgI CCRYGG 2 cut(s) 76, 510
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 3 cut(s) 106, 634, 751
CviAII CATG 5 cut(s) 420, 454, 614, 666, 697
CviJI RGCY 7 cut(s) 44, 69, 321, 509, 515, 693, 776
CviKI_1 RGCY 7 cut(s) 44, 69, 321, 509, 515, 693, 776
CviQI GTAC 3 cut(s) 106, 634, 751
DdeI CTNAG 2 cut(s) 432, 529
DpnI GATC 2 cut(s) 306, 498
DpnII GATC 2 cut(s) 304, 496
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 666
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoRI GAATTC 1 cut(s) 702
EcoRII CCWGG 2 cut(s) 677, 724
FaeI CATG 5 cut(s) 423, 457, 617, 669, 700
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 5 cut(s) 419, 453, 613, 665, 696
FauI CCCGC 1 cut(s) 590
Fnu4HI GCNGC 2 cut(s) 322, 450
Fsp4HI GCNGC 2 cut(s) 322, 450
FspBI CTAG 2 cut(s) 138, 381
GluI GCNGC 2 cut(s) 322, 450
GsuI CTGGAG 2 cut(s) 169, 708
HaeIII GGCC 2 cut(s) 509, 515
Hin1II CATG 5 cut(s) 423, 457, 617, 669, 700
HinfI GANTC 1 cut(s) 375
HphI GGTGA 2 cut(s) 46, 695
Hpy166II GTNNAC 2 cut(s) 80, 292
Hpy188I TCNGA 3 cut(s) 121, 135, 277
Hpy8I GTNNAC 2 cut(s) 80, 292
HpyAV CCTTC 3 cut(s) 184, 644, 765
HpyCH4III ACNGT 2 cut(s) 296, 464
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 410, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 542
HpyF3I CTNAG 2 cut(s) 432, 529
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 5 cut(s) 423, 457, 617, 669, 700
KpnI GGTACC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 304, 496
LmnI GCTCC 2 cut(s) 49, 793
LpnPI CCDG 9 cut(s) 128, 133, 537, 573, 664, 691, 702, 711, 738
Lsp1109I GCAGC 2 cut(s) 308, 436
LweI GCATC 3 cut(s) 334, 532, 779
MaeI CTAG 2 cut(s) 138, 381
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 6 cut(s) 52, 166, 254, 296, 422, 619
MalI GATC 2 cut(s) 306, 498
MboI GATC 2 cut(s) 304, 496
MboII GAAGA 6 cut(s) 23, 353, 398, 425, 659, 698
MfeI CAATTG 2 cut(s) 228, 260
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 8 cut(s) 14, 141, 228, 260, 309, 557, 592, 702
MluNI TGGCCA 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 158, 788
MnlI CCTC 8 cut(s) 144, 226, 365, 489, 632, 722, 732, 802
Mox20I TGGCCA 1 cut(s) 515
MroXI GAANNNNTTC 2 cut(s) 15, 474
MscI TGGCCA 1 cut(s) 515
MseI TTAA 3 cut(s) 59, 312, 351
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 679, 726
MunI CAATTG 2 cut(s) 228, 260
MvaI CCWGG 2 cut(s) 679, 726
MwoI GCNNNNNNNGC 2 cut(s) 215, 542
NdeII GATC 2 cut(s) 304, 496
NlaIII CATG 5 cut(s) 423, 457, 617, 669, 700
NlaIV GGNNCC 4 cut(s) 107, 163, 477, 655
NmuCI GTSAC 2 cut(s) 52, 422
NspI RCATGY 1 cut(s) 423
NspV TTCGAA 1 cut(s) 709
PciI ACATGT 1 cut(s) 419
PdmI GAANNNNTTC 2 cut(s) 15, 474
PfeI GAWTC 1 cut(s) 375
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 2 cut(s) 323, 451
PscI ACATGT 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 677, 724
PspGI CCWGG 2 cut(s) 677, 724
PspN4I GGNNCC 4 cut(s) 107, 163, 477, 655
PspPI GGNCC 1 cut(s) 719
RsaI GTAC 3 cut(s) 107, 635, 752
RsaNI GTAC 3 cut(s) 106, 634, 751
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 3 cut(s) 59, 312, 351
SatI GCNGC 2 cut(s) 322, 450
Sau3AI GATC 2 cut(s) 304, 496
Sau96I GGNCC 1 cut(s) 719
ScrFI CCNGG 2 cut(s) 679, 726
SfaNI GCATC 3 cut(s) 334, 532, 779
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 8 cut(s) 14, 141, 228, 260, 309, 557, 592, 702
SsiI CCGC 2 cut(s) 324, 597
SspMI CTAG 2 cut(s) 138, 381
StyD4I CCNGG 2 cut(s) 677, 724
TaaI ACNGT 2 cut(s) 296, 464
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 709
TasI AATT 8 cut(s) 14, 141, 228, 260, 309, 557, 592, 702
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 3 cut(s) 59, 312, 351
Tru9I TTAA 3 cut(s) 59, 312, 351
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 52, 422
TseI GCWGC 2 cut(s) 321, 449
Tsp45I GTSAC 2 cut(s) 52, 422
TspDTI ATGAA 4 cut(s) 24, 483, 570, 654
TspGWI ACGGA 3 cut(s) 65, 384, 651
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 719
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 3 cut(s) 14, 557, 702
XceI RCATGY 1 cut(s) 423
XmnI GAANNNNTTC 2 cut(s) 15, 474
XspI CTAG 2 cut(s) 138, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.