Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0008144

Physical Location & Seq

Genomic Coordinates Forward (+)

76296 .. 77395

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggcacaacccccagccacgtccaacgatgaatttgatccctctacattttttaaaacatttgagcaatggaaggcacagttcggacgcacttacgttgacaatgcagagaaagaaaggcgtctcaccatgttcgcgaagaacatgttatttgtaaataacttcaacagccaagggaataagacttacaagttaagagtcaacttgttttctgatatgtccaatgaagaatttctcggactttacactggatttcaagctcccaatgtcaccttaaactcaagctcattccgaggacaacgtaatatgaaatcttttaggtaccaagacctgtctgaaactgatgttccgactagaattgactggagggaacaaggtgctgttacccccgtcaaggaacaaggccaatgcacagtggcagcaattgagggcattaccaaaatcaaaagtaaccaattgatttcactgtccgagcaacaacttgtggactgtaacagagatcaaattaacaagggctgcggtggtggtaatatggaagatgcctttaaatacataaatgacaacggaggaatcactagtgaagaaaactaccaatacaagggtgcagaagagacatgtgacactactaagacgactgaatatgctgccaagataaacggttatgaaatggttcctcccaacagcgaaaatgatctactaaaggccgtggccaagcaaccagtctcagtcgcccttgatgccgatggagctgaatttagggcatacgcaagtggggtattttctggtaattgcgggacaaaactaacccatgctgttacaatcgttgggtacggaacgactgaagaaggcaccaactattggttagtgaagaattcatggggcgaaacctggggtgaaaagggctacatgagaattcttcgaaatgctggtcctccaggaggtttgtgtggcattgctatgtacccttcttatccaactgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

327

Amino Acids

36.36

Weight (kDa)

5.15

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06040
rosa_chinensis	RchiOBHm_Chr3g0455011 RchiOBHm_Chr3g0455051 RchiOBHm_Chr3g0455061
rosa_laevigata	RLG00000025390 RLG00000025392 RLG00000025393
rosa_multiflora	Rmu_sc0002169.1_g000011 Rmu_sc0002169.1_g000016 Rmu_sc0002169.1_g000018
rosa_roxburghii	Rroxscaffold_6G00424580
rosa_rugosa	Rorug03G0004000 Rorug03G0004000
rosa_samantha	Rh3AG063600 Rh3AG063700 Rh3AG064000 Rh3AG064200 Rh3BG065500 Rh3BG065600 Rh3BG065900 Rh3BG066000
rosa_wichuraiana	Rw3G005000 Rw3G005010 Rw3G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	321, 848
AccB7I	CCANNNNNTGG	1 cut(s)	858
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	519, 792
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	5 cut(s)	32, 230, 752, 871, 912
AcuI	CTGAAG	1 cut(s)	861
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	3 cut(s)	323, 830, 962
AfiI	CCNNNNNNNGG	4 cut(s)	394, 598, 858, 938
AflIII	ACRYGT	2 cut(s)	144, 614
AgsI	TTSAA	2 cut(s)	166, 257
AhlI	ACTAGT	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	21
AjnI	CCWGG	2 cut(s)	887, 934
AluBI	AGCT	3 cut(s)	260, 285, 749
AluI	AGCT	3 cut(s)	260, 285, 749
Alw26I	GTCTC	3 cut(s)	128, 605, 727
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	3 cut(s)	403, 702, 708
ApeKI	GCWGC	3 cut(s)	419, 516, 644
ApoI	RAATTY	5 cut(s)	32, 230, 752, 871, 912
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
Asp700I	GAANNNNTTC	2 cut(s)	231, 669
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	929
AsuHPI	GGTGA	3 cut(s)	118, 262, 905
AsuII	TTCGAA	1 cut(s)	919
AvaII	GGWCC	1 cut(s)	929
BalI	TGGCCA	1 cut(s)	710
BanI	GGYRCC	2 cut(s)	321, 848
BbvI	GCAGC	3 cut(s)	431, 503, 631
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	2 cut(s)	889, 936
BcoDI	GTCTC	3 cut(s)	128, 605, 727
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	2 cut(s)	354, 576
BisI	GCNGC	3 cut(s)	420, 517, 645
BlsI	GCNGC	3 cut(s)	421, 518, 646
Bme1390I	CCNGG	2 cut(s)	889, 936
Bme18I	GGWCC	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	929
BmiI	GGNNCC	3 cut(s)	323, 672, 850
BmrFI	CCNGG	2 cut(s)	889, 936
BmsI	GCATC	2 cut(s)	529, 727
BpmI	CTGGAG	2 cut(s)	385, 918
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	4 cut(s)	172, 292, 705, 888
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 598, 858, 938
Bse1I	ACTGG	3 cut(s)	253, 368, 719
Bse3DI	GCAATG	2 cut(s)	74, 951
BseBI	CCWGG	2 cut(s)	889, 936
BseDI	CCNNGG	4 cut(s)	172, 292, 705, 888
BseLI	CCNNNNNNNGG	4 cut(s)	394, 598, 858, 938
BseMI	GCAATG	2 cut(s)	74, 951
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	3 cut(s)	253, 368, 719
BseXI	GCAGC	3 cut(s)	431, 503, 631
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	405, 704, 710
BshNI	GGYRCC	2 cut(s)	321, 848
BslFI	GGGAC	1 cut(s)	808
BslI	CCNNNNNNNGG	4 cut(s)	394, 598, 858, 938
BsmAI	GTCTC	3 cut(s)	128, 605, 727
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	808
BsnI	GGCC	3 cut(s)	405, 704, 710
Bsp119I	TTCGAA	1 cut(s)	919
Bsp143I	GATC	3 cut(s)	37, 499, 691
Bsp68I	TCGCGA	1 cut(s)	137
BspACI	CCGC	2 cut(s)	519, 792
BspANI	GGCC	3 cut(s)	405, 704, 710
BspCNI	CTCAG	1 cut(s)	737
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	3 cut(s)	323, 672, 850
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	919
BspT107I	GGYRCC	2 cut(s)	321, 848
BsrDI	GCAATG	2 cut(s)	74, 951
BsrI	ACTGG	3 cut(s)	253, 368, 719
BssECI	CCNNGG	4 cut(s)	172, 292, 705, 888
BssMI	GATC	3 cut(s)	37, 499, 691
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	889, 936
Bst4CI	ACNGT	5 cut(s)	81, 415, 468, 491, 659
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	919
BstDEI	CTNAG	2 cut(s)	627, 724
BstDSI	CCRYGG	1 cut(s)	705
BstENI	CCTNNNNNAGG	1 cut(s)	936
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	3 cut(s)	40, 502, 694
BstMAI	GTCTC	3 cut(s)	128, 605, 727
BstMBI	GATC	3 cut(s)	37, 499, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 746
BstNI	CCWGG	2 cut(s)	889, 936
BstNSI	RCATGY	2 cut(s)	148, 618
BstSCI	CCNGG	2 cut(s)	887, 934
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	431, 503, 631
BsuRI	GGCC	3 cut(s)	405, 704, 710
BtgI	CCRYGG	1 cut(s)	705
BtrI	CACGTC	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	246, 420, 464
BtuMI	TCGCGA	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	929
CseI	GACGC	2 cut(s)	96, 110
Csp6I	GTAC	3 cut(s)	322, 829, 961
CviAII	CATG	6 cut(s)	130, 145, 615, 809, 876, 907
CviQI	GTAC	3 cut(s)	322, 829, 961
DdeI	CTNAG	2 cut(s)	627, 724
DpnI	GATC	3 cut(s)	39, 501, 693
DpnII	GATC	3 cut(s)	37, 499, 691
DraI	TTTAAA	2 cut(s)	55, 547
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	929
Eco57I	CTGAAG	1 cut(s)	861
EcoNI	CCTNNNNNAGG	1 cut(s)	936
EcoRI	GAATTC	2 cut(s)	871, 912
EcoRII	CCWGG	2 cut(s)	887, 934
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	6 cut(s)	133, 148, 618, 812, 879, 910
FaqI	GGGAC	1 cut(s)	808
FatI	CATG	6 cut(s)	129, 144, 614, 808, 875, 906
FauI	CCCGC	1 cut(s)	785
Fnu4HI	GCNGC	3 cut(s)	420, 517, 645
Fsp4HI	GCNGC	3 cut(s)	420, 517, 645
FspBI	CTAG	2 cut(s)	354, 576
GluI	GCNGC	3 cut(s)	420, 517, 645
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	2 cut(s)	385, 918
HaeIII	GGCC	3 cut(s)	405, 704, 710
HgaI	GACGC	2 cut(s)	96, 110
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	6 cut(s)	133, 148, 618, 812, 879, 910
HincII	GTYRAC	2 cut(s)	100, 202
HindII	GTYRAC	2 cut(s)	100, 202
HinfI	GANTC	2 cut(s)	198, 570
HphI	GGTGA	3 cut(s)	118, 262, 905
Hpy166II	GTNNAC	3 cut(s)	100, 202, 487
Hpy188I	TCNGA	7 cut(s)	86, 214, 239, 293, 337, 351, 472
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	100, 202, 487
HpyAV	CCTTC	3 cut(s)	67, 839, 975
HpyCH4III	ACNGT	5 cut(s)	81, 415, 468, 491, 659
HpyCH4IV	ACGT	3 cut(s)	20, 96, 301
HpyCH4V	TGCA	4 cut(s)	107, 411, 605, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 746
HpyF3I	CTNAG	2 cut(s)	627, 724
HpySE526I	ACGT	3 cut(s)	20, 96, 301
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	6 cut(s)	133, 148, 618, 812, 879, 910
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	37, 499, 691
LmnI	GCTCC	2 cut(s)	265, 746
Lsp1109I	GCAGC	3 cut(s)	431, 503, 631
LweI	GCATC	2 cut(s)	529, 727
MaeI	CTAG	2 cut(s)	354, 576
MaeII	ACGT	3 cut(s)	20, 96, 301
MaeIII	GTNAC	6 cut(s)	268, 382, 449, 491, 617, 814
MalI	GATC	3 cut(s)	39, 501, 693
MboI	GATC	3 cut(s)	37, 499, 691
MboII	GAAGA	8 cut(s)	151, 239, 548, 593, 620, 854, 880, 908
MfeI	CAATTG	2 cut(s)	423, 455
MlsI	TGGCCA	1 cut(s)	710
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	48, 374
MnlI	CCTC	8 cut(s)	52, 287, 360, 421, 560, 684, 932, 942
Mox20I	TGGCCA	1 cut(s)	710
MroXI	GAANNNNTTC	2 cut(s)	231, 669
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	5 cut(s)	54, 194, 275, 507, 546
MslI	CAYNNNNRTG	1 cut(s)	956
Msp20I	TGGCCA	1 cut(s)	710
MspR9I	CCNGG	2 cut(s)	889, 936
MunI	CAATTG	2 cut(s)	423, 455
MvaI	CCWGG	2 cut(s)	889, 936
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	737, 746
NdeII	GATC	3 cut(s)	37, 499, 691
NlaIII	CATG	6 cut(s)	133, 148, 618, 812, 879, 910
NlaIV	GGNNCC	3 cut(s)	323, 672, 850
NmuCI	GTSAC	2 cut(s)	268, 617
NruI	TCGCGA	1 cut(s)	137
NspI	RCATGY	2 cut(s)	148, 618
NspV	TTCGAA	1 cut(s)	919
PciI	ACATGT	2 cut(s)	144, 614
PdmI	GAANNNNTTC	2 cut(s)	231, 669
PfeI	GAWTC	1 cut(s)	570
PflMI	CCANNNNNTGG	1 cut(s)	858
PfoI	TCCNGGA	1 cut(s)	934
PkrI	GCNGC	3 cut(s)	421, 518, 646
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	2 cut(s)	144, 614
Psp6I	CCWGG	2 cut(s)	887, 934
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	2 cut(s)	887, 934
PspN4I	GGNNCC	3 cut(s)	323, 672, 850
PspPI	GGNCC	1 cut(s)	929
RruI	TCGCGA	1 cut(s)	137
RsaI	GTAC	3 cut(s)	323, 830, 962
RsaNI	GTAC	3 cut(s)	322, 829, 961
RseI	CAYNNNNRTG	1 cut(s)	956
SaqAI	TTAA	5 cut(s)	54, 194, 275, 507, 546
SatI	GCNGC	3 cut(s)	420, 517, 645
Sau3AI	GATC	3 cut(s)	37, 499, 691
Sau96I	GGNCC	1 cut(s)	929
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	889, 936
SfaNI	GCATC	2 cut(s)	529, 727
SfuI	TTCGAA	1 cut(s)	919
SinI	GGWCC	1 cut(s)	929
SmiMI	CAYNNNNRTG	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	575
SsiI	CCGC	2 cut(s)	519, 792
SspMI	CTAG	2 cut(s)	354, 576
StyD4I	CCNGG	2 cut(s)	887, 934
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	5 cut(s)	81, 415, 468, 491, 659
TaiI	ACGT	3 cut(s)	23, 99, 304
TaqI	TCGA	1 cut(s)	919
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	5 cut(s)	54, 194, 275, 507, 546
Tru9I	TTAA	5 cut(s)	54, 194, 275, 507, 546
TscAI	CASTG	3 cut(s)	253, 420, 471
TseFI	GTSAC	2 cut(s)	268, 617
TseI	GCWGC	3 cut(s)	419, 516, 644
Tsp45I	GTSAC	2 cut(s)	268, 617
TspDTI	ATGAA	5 cut(s)	45, 240, 323, 678, 864
TspGWI	ACGGA	2 cut(s)	579, 846
TspRI	CASTG	3 cut(s)	253, 420, 471
Van91I	CCANNNNNTGG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	929
XagI	CCTNNNNNAGG	1 cut(s)	936
XapI	RAATTY	5 cut(s)	32, 230, 752, 871, 912
XceI	RCATGY	2 cut(s)	148, 618
XmnI	GAANNNNTTC	2 cut(s)	231, 669
XspI	CTAG	2 cut(s)	354, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.