RLG00000025392

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008144
Physical Location & Seq
Reverse (-)
45500186 .. 45501315
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025392

Sequence Viewer

Length: 1035 bp
ATGGCACAACCCCCAGCCACGTCCAACGATGAAGTTAATCCCTCTACATTTTTGAAAACATTTGAGCAATGGATGGCACAGTTCGGACGCACTTACGATGACAATGCAGAGAAAGAAAGGCGACTCACCATATTCATGAAGAACTTGTTATTTGTAAATAACTTCAACAACCAAGGGAATAAGACTTACAAGTTAAGTGTCAACTTGTTTTCAGATATGAGCAATGAAGAATTTCTCAGATTTTACACTGGATTTCAAGCTCCCAATGTCACCTTAAACTCAAGCTCATTCCGTGGACAACGTAATAACAAGTCTTTTAGGTACCAAGACTTGTCTGAAATTGATGTTCCAACTAGAATTGACTGGAGGGAACAAGGTGCTGTTACCCCCGTCAAGGAGCAAGGACAATGCAGTTCTTGTTGGGCATTTTCAGCAGTGGCAACAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCTTTTAAATACATATATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGGGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAACGGTTATGAAATGGTTCCTCCCAATAGCGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTTGCCATTGATGCCGATGGAGCTGAATTTAGGGCATACACAAGTGGGATATTTTCTGGTAATTGCGGGACAAACCTAACCCATGCTGTTACAATCGTTGGGTACGGAACGACTGAAGAAGGCACCAACTATTGGTTAGTGAAGAATTCATGGGGCGAAACTTGGGGTGAAAAGGGCTACATGAGAATTCTTAGAAATGCTGGTCCTCCAGGAGGTTTGTGTGGCATTGCTATGTACCCTTCTTATCCAACTGCATCAGCTATGGCACCCGCTGCCACATCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

345

Amino Acids

38.08

Weight (kDa)

5.04

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 21 - 78 5.2e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 116 - 333 3.4e-81 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 3 cut(s) 321, 869, 1012
AccB7I CCANNNNNTGG 1 cut(s) 879
AciI CCGC 3 cut(s) 540, 813, 1017
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 4 cut(s) 230, 773, 892, 933
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 3 cut(s) 323, 851, 983
AfiI CCNNNNNNNGG 4 cut(s) 394, 619, 879, 959
AflIII ACRYGT 1 cut(s) 635
AgsI TTSAA 3 cut(s) 55, 166, 257
AhlI ACTAGT 1 cut(s) 596
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 955
AluBI AGCT 4 cut(s) 260, 285, 770, 1007
AluI AGCT 4 cut(s) 260, 285, 770, 1007
Alw26I GTCTC 1 cut(s) 748
AoxI GGCC 2 cut(s) 723, 729
ApeKI GCWGC 3 cut(s) 537, 665, 1019
ApoI RAATTY 4 cut(s) 230, 773, 892, 933
Asp700I GAANNNNTTC 2 cut(s) 231, 690
Asp718I GGTACC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 950
AsuHPI GGTGA 3 cut(s) 118, 262, 926
AvaII GGWCC 1 cut(s) 950
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 3 cut(s) 321, 869, 1012
BbvI GCAGC 3 cut(s) 524, 652, 1006
BccI CCATC 2 cut(s) 67, 758
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 957
BcoDI GTCTC 1 cut(s) 748
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 2 cut(s) 354, 597
BisI GCNGC 3 cut(s) 538, 666, 1020
BlsI GCNGC 3 cut(s) 539, 667, 1021
Bme1390I CCNGG 1 cut(s) 957
Bme18I GGWCC 1 cut(s) 950
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 950
BmiI GGNNCC 4 cut(s) 323, 693, 871, 1014
BmrFI CCNGG 1 cut(s) 957
BmsI GCATC 3 cut(s) 550, 748, 1010
BpmI CTGGAG 2 cut(s) 385, 939
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 172, 292, 726
Bsc4I CCNNNNNNNGG 4 cut(s) 394, 619, 879, 959
Bse1I ACTGG 3 cut(s) 253, 368, 740
Bse3DI GCAATG 3 cut(s) 74, 229, 972
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 3 cut(s) 172, 292, 726
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 4 cut(s) 394, 619, 879, 959
BseMI GCAATG 3 cut(s) 74, 229, 972
BseMII CTCAG 2 cut(s) 250, 759
BseNI ACTGG 3 cut(s) 253, 368, 740
BseXI GCAGC 3 cut(s) 524, 652, 1006
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 2 cut(s) 725, 731
BshNI GGYRCC 3 cut(s) 321, 869, 1012
BslFI GGGAC 2 cut(s) 646, 829
BslI CCNNNNNNNGG 4 cut(s) 394, 619, 879, 959
BsmAI GTCTC 1 cut(s) 748
BsmFI GGGAC 2 cut(s) 646, 829
BsnI GGCC 2 cut(s) 725, 731
Bsp143I GATC 2 cut(s) 520, 712
BspACI CCGC 3 cut(s) 540, 813, 1017
BspANI GGCC 2 cut(s) 725, 731
BspCNI CTCAG 2 cut(s) 249, 758
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 323, 693, 871, 1014
BspT107I GGYRCC 3 cut(s) 321, 869, 1012
BsrDI GCAATG 3 cut(s) 74, 229, 972
BsrI ACTGG 3 cut(s) 253, 368, 740
BssECI CCNNGG 3 cut(s) 172, 292, 726
BssMI GATC 2 cut(s) 520, 712
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 4 cut(s) 81, 489, 512, 680
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstDEI CTNAG 4 cut(s) 236, 648, 745, 938
BstDSI CCRYGG 2 cut(s) 292, 726
BstENI CCTNNNNNAGG 1 cut(s) 957
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 2 cut(s) 523, 715
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 2 cut(s) 520, 712
BstMWI GCNNNNNNNGC 4 cut(s) 431, 758, 767, 1019
BstNI CCWGG 1 cut(s) 957
BstNSI RCATGY 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 955
BstV1I GCAGC 3 cut(s) 524, 652, 1006
BsuRI GGCC 2 cut(s) 725, 731
BtgI CCRYGG 2 cut(s) 292, 726
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 246, 441, 485
CciI TCATGA 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 950
CseI GACGC 1 cut(s) 96
Csp6I GTAC 3 cut(s) 322, 850, 982
CviAII CATG 5 cut(s) 136, 636, 830, 897, 928
CviJI RGCY 9 cut(s) 17, 260, 285, 537, 725, 731, 770, 924, 1007
CviKI_1 RGCY 9 cut(s) 17, 260, 285, 537, 725, 731, 770, 924, 1007
CviQI GTAC 3 cut(s) 322, 850, 982
DdeI CTNAG 4 cut(s) 236, 648, 745, 938
DpnI GATC 2 cut(s) 522, 714
DpnII GATC 2 cut(s) 520, 712
DraI TTTAAA 1 cut(s) 568
EaeI YGGCCR 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 882
EcoNI CCTNNNNNAGG 1 cut(s) 957
EcoRI GAATTC 2 cut(s) 892, 933
EcoRII CCWGG 1 cut(s) 955
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 5 cut(s) 139, 639, 833, 900, 931
FaqI GGGAC 2 cut(s) 646, 829
FatI CATG 5 cut(s) 135, 635, 829, 896, 927
FauI CCCGC 2 cut(s) 806, 1024
Fnu4HI GCNGC 3 cut(s) 538, 666, 1020
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 538, 666, 1020
FspBI CTAG 2 cut(s) 354, 597
GluI GCNGC 3 cut(s) 538, 666, 1020
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 2 cut(s) 385, 939
HaeIII GGCC 2 cut(s) 725, 731
HgaI GACGC 1 cut(s) 96
Hin1II CATG 5 cut(s) 139, 639, 833, 900, 931
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 123, 591
HphI GGTGA 3 cut(s) 118, 262, 926
Hpy166II GTNNAC 3 cut(s) 202, 296, 508
Hpy188I TCNGA 5 cut(s) 86, 214, 239, 337, 493
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 202, 296, 508
HpyAV CCTTC 3 cut(s) 623, 860, 996
HpyCH4III ACNGT 4 cut(s) 81, 489, 512, 680
HpyCH4IV ACGT 2 cut(s) 20, 301
HpyCH4V TGCA 4 cut(s) 107, 411, 626, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 758, 767, 1019
HpyF3I CTNAG 4 cut(s) 236, 648, 745, 938
HpySE526I ACGT 2 cut(s) 20, 301
Hsp92II CATG 5 cut(s) 139, 639, 833, 900, 931
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 520, 712
LmnI GCTCC 3 cut(s) 265, 397, 767
LpnPI CCDG 8 cut(s) 27, 234, 349, 753, 789, 933, 942, 969
Lsp1109I GCAGC 3 cut(s) 524, 652, 1006
LweI GCATC 3 cut(s) 550, 748, 1010
MaeI CTAG 2 cut(s) 354, 597
MaeII ACGT 2 cut(s) 20, 301
MaeIII GTNAC 6 cut(s) 268, 382, 470, 512, 638, 835
MalI GATC 2 cut(s) 522, 714
MboI GATC 2 cut(s) 520, 712
MboII GAAGA 6 cut(s) 151, 239, 569, 614, 875, 901
MfeI CAATTG 2 cut(s) 444, 476
MlsI TGGCCA 1 cut(s) 731
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 3 cut(s) 48, 374, 1019
MnlI CCTC 7 cut(s) 52, 360, 442, 581, 705, 953, 963
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 231, 690
MscI TGGCCA 1 cut(s) 731
MseI TTAA 5 cut(s) 36, 194, 275, 528, 567
MslI CAYNNNNRTG 2 cut(s) 134, 977
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 1019
MspR9I CCNGG 1 cut(s) 957
MunI CAATTG 2 cut(s) 444, 476
MvaI CCWGG 1 cut(s) 957
MwoI GCNNNNNNNGC 4 cut(s) 431, 758, 767, 1019
NdeII GATC 2 cut(s) 520, 712
NlaIII CATG 5 cut(s) 139, 639, 833, 900, 931
NlaIV GGNNCC 4 cut(s) 323, 693, 871, 1014
NmuCI GTSAC 2 cut(s) 268, 638
NspI RCATGY 1 cut(s) 639
PagI TCATGA 1 cut(s) 135
PciI ACATGT 1 cut(s) 635
PdmI GAANNNNTTC 2 cut(s) 231, 690
PfeI GAWTC 1 cut(s) 591
PflMI CCANNNNNTGG 1 cut(s) 879
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 3 cut(s) 539, 667, 1021
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 955
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 4 cut(s) 323, 693, 871, 1014
PspPI GGNCC 1 cut(s) 950
RsaI GTAC 3 cut(s) 323, 851, 983
RsaNI GTAC 3 cut(s) 322, 850, 982
RseI CAYNNNNRTG 2 cut(s) 134, 977
SaqAI TTAA 5 cut(s) 36, 194, 275, 528, 567
SatI GCNGC 3 cut(s) 538, 666, 1020
Sau3AI GATC 2 cut(s) 520, 712
Sau96I GGNCC 1 cut(s) 950
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 957
SfaNI GCATC 3 cut(s) 550, 748, 1010
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 2 cut(s) 134, 977
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SpeI ACTAGT 1 cut(s) 596
SsiI CCGC 3 cut(s) 540, 813, 1017
SspMI CTAG 2 cut(s) 354, 597
StyD4I CCNGG 1 cut(s) 955
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 4 cut(s) 81, 489, 512, 680
TaiI ACGT 2 cut(s) 23, 304
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 5 cut(s) 36, 194, 275, 528, 567
Tru9I TTAA 5 cut(s) 36, 194, 275, 528, 567
TscAI CASTG 3 cut(s) 253, 441, 492
TseFI GTSAC 2 cut(s) 268, 638
TseI GCWGC 3 cut(s) 537, 665, 1019
Tsp45I GTSAC 2 cut(s) 268, 638
TspDTI ATGAA 6 cut(s) 45, 124, 152, 240, 699, 885
TspGWI ACGGA 3 cut(s) 281, 600, 867
TspRI CASTG 3 cut(s) 253, 441, 492
Van91I CCANNNNNTGG 1 cut(s) 879
VpaK11BI GGWCC 1 cut(s) 950
XagI CCTNNNNNAGG 1 cut(s) 957
XapI RAATTY 4 cut(s) 230, 773, 892, 933
XceI RCATGY 1 cut(s) 639
XmnI GAANNNNTTC 2 cut(s) 231, 690
XspI CTAG 2 cut(s) 354, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.