Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0008144

Physical Location & Seq

Genomic Coordinates Forward (+)

50893 .. 52049

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggcttttcaaaataaccttgttatagttgccattttatctatcatcttgggggcaacggcacaacccccagccacgtccaacgatgaatttgatccctctacattttttaaaacatttgagcaatggatggcacagttcggacgcacttacgttgacaatgcagagaaagaaaggcgtctcaccatgttcgcgaagaacatgttatttgtaaataacttcaacagccaagggaataagacttacaagttaagagtcaacttgttttctgatatgtccaatgaagaatttctcggactttacactggatttcaagctcccaatgtcaccttaaactcaagctcattccgaggacaacgtaatatgaaatcttttaggtaccaagacctgtctgaaactgatgttccaactagaattgactggagggaacaaggtgctgttacccccgtcaaggaacaaggacaatgcacagtggcagcaattgagggcattaccaaaatcaaaagtaaccaattgatttcactgtccgagcaacaacttgtggactgtaacagagatcaaattaacaagggctgcggtggtggtaatatggaagatgcctttaaatacataaatgacaacggaggaatcactagtgaagaaaactaccaatacaagggtgcagaagagacatgtgacactactaagacgactgaatatgctgccaagataaacggttatgaaatggttcctcccaacagcgaaaatgatctactaaaggccgtggccaagcaaccagtctcagtcgcccttgatgccgatggagctgaatttagggcatacgcaagtggggtattttctggtaattgcgggacaaaactaacccatgctgttacaatcgttgggtacggaacgactgaagaaggcaccaactattggttagtgaagaattcatggggcgaaacctggggtgaaaagggctacatgagaattcttcgaaatgctggtcctccaggaggtttgtgtggcattgctatgtacccttcttatccaactgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

346

Amino Acids

38.31

Weight (kDa)

5.06

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06040
rosa_chinensis	RchiOBHm_Chr3g0455011 RchiOBHm_Chr3g0455051 RchiOBHm_Chr3g0455061
rosa_laevigata	RLG00000025390 RLG00000025392 RLG00000025393
rosa_multiflora	Rmu_sc0002169.1_g000011 Rmu_sc0002169.1_g000016 Rmu_sc0002169.1_g000018
rosa_roxburghii	Rroxscaffold_6G00424580
rosa_rugosa	Rorug03G0004000 Rorug03G0004000
rosa_samantha	Rh3AG063600 Rh3AG063700 Rh3AG064000 Rh3AG064200 Rh3BG065500 Rh3BG065600 Rh3BG065900 Rh3BG066000
rosa_wichuraiana	Rw3G005000 Rw3G005010 Rw3G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	378, 905
AccB7I	CCANNNNNTGG	1 cut(s)	915
AccII	CGCG	1 cut(s)	194
AciI	CCGC	2 cut(s)	576, 849
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	5 cut(s)	89, 287, 809, 928, 969
AcuI	CTGAAG	1 cut(s)	918
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	3 cut(s)	380, 887, 1019
AfiI	CCNNNNNNNGG	4 cut(s)	451, 655, 915, 995
AflIII	ACRYGT	2 cut(s)	201, 671
AgsI	TTSAA	3 cut(s)	11, 223, 314
AhlI	ACTAGT	1 cut(s)	632
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	2 cut(s)	944, 991
AluBI	AGCT	3 cut(s)	317, 342, 806
AluI	AGCT	3 cut(s)	317, 342, 806
Alw26I	GTCTC	3 cut(s)	185, 662, 784
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	759, 765
ApeKI	GCWGC	3 cut(s)	476, 573, 701
ApoI	RAATTY	5 cut(s)	89, 287, 809, 928, 969
ArsI	GACNNNNNNTTYG	2 cut(s)	970, 1002
Asp700I	GAANNNNTTC	2 cut(s)	288, 726
Asp718I	GGTACC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	986
AsuHPI	GGTGA	3 cut(s)	175, 319, 962
AsuII	TTCGAA	1 cut(s)	976
AvaII	GGWCC	1 cut(s)	986
BalI	TGGCCA	1 cut(s)	767
BanI	GGYRCC	2 cut(s)	378, 905
BbvI	GCAGC	3 cut(s)	488, 560, 688
BccI	CCATC	2 cut(s)	124, 794
BceAI	ACGGC	2 cut(s)	75, 746
BciT130I	CCWGG	2 cut(s)	946, 993
BcoDI	GTCTC	3 cut(s)	185, 662, 784
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	2 cut(s)	411, 633
BisI	GCNGC	3 cut(s)	477, 574, 702
BlsI	GCNGC	3 cut(s)	478, 575, 703
Bme1390I	CCNGG	2 cut(s)	946, 993
Bme18I	GGWCC	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	986
BmiI	GGNNCC	3 cut(s)	380, 729, 907
BmrFI	CCNGG	2 cut(s)	946, 993
BmsI	GCATC	2 cut(s)	586, 784
BpmI	CTGGAG	2 cut(s)	442, 975
Bpu14I	TTCGAA	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	4 cut(s)	229, 349, 762, 945
Bsc4I	CCNNNNNNNGG	4 cut(s)	451, 655, 915, 995
Bse1I	ACTGG	3 cut(s)	310, 425, 776
Bse3DI	GCAATG	2 cut(s)	131, 1008
BseBI	CCWGG	2 cut(s)	946, 993
BseDI	CCNNGG	4 cut(s)	229, 349, 762, 945
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	4 cut(s)	451, 655, 915, 995
BseMI	GCAATG	2 cut(s)	131, 1008
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	3 cut(s)	310, 425, 776
BseXI	GCAGC	3 cut(s)	488, 560, 688
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	761, 767
BshNI	GGYRCC	2 cut(s)	378, 905
BslFI	GGGAC	1 cut(s)	865
BslI	CCNNNNNNNGG	4 cut(s)	451, 655, 915, 995
BsmAI	GTCTC	3 cut(s)	185, 662, 784
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	865
BsnI	GGCC	2 cut(s)	761, 767
Bsp119I	TTCGAA	1 cut(s)	976
Bsp143I	GATC	3 cut(s)	94, 556, 748
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	2 cut(s)	576, 849
BspANI	GGCC	2 cut(s)	761, 767
BspCNI	CTCAG	1 cut(s)	794
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	380, 729, 907
BspPI	GGATC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	976
BspT107I	GGYRCC	2 cut(s)	378, 905
BsrDI	GCAATG	2 cut(s)	131, 1008
BsrI	ACTGG	3 cut(s)	310, 425, 776
BssECI	CCNNGG	4 cut(s)	229, 349, 762, 945
BssMI	GATC	3 cut(s)	94, 556, 748
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	946, 993
Bst4CI	ACNGT	5 cut(s)	138, 472, 525, 548, 716
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	976
BstDEI	CTNAG	2 cut(s)	684, 781
BstDSI	CCRYGG	1 cut(s)	762
BstENI	CCTNNNNNAGG	1 cut(s)	993
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	3 cut(s)	97, 559, 751
BstMAI	GTCTC	3 cut(s)	185, 662, 784
BstMBI	GATC	3 cut(s)	94, 556, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	794, 803
BstNI	CCWGG	2 cut(s)	946, 993
BstNSI	RCATGY	2 cut(s)	205, 675
BstSCI	CCNGG	2 cut(s)	944, 991
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	488, 560, 688
BsuRI	GGCC	2 cut(s)	761, 767
BtgI	CCRYGG	1 cut(s)	762
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	303, 477, 521
BtuMI	TCGCGA	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	986
CseI	GACGC	2 cut(s)	153, 167
Csp6I	GTAC	3 cut(s)	379, 886, 1018
CviAII	CATG	6 cut(s)	187, 202, 672, 866, 933, 964
CviQI	GTAC	3 cut(s)	379, 886, 1018
DdeI	CTNAG	2 cut(s)	684, 781
DpnI	GATC	3 cut(s)	96, 558, 750
DpnII	GATC	3 cut(s)	94, 556, 748
DraI	TTTAAA	2 cut(s)	112, 604
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	986
Eco57I	CTGAAG	1 cut(s)	918
EcoNI	CCTNNNNNAGG	1 cut(s)	993
EcoRI	GAATTC	2 cut(s)	928, 969
EcoRII	CCWGG	2 cut(s)	944, 991
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	6 cut(s)	190, 205, 675, 869, 936, 967
FaqI	GGGAC	1 cut(s)	865
FatI	CATG	6 cut(s)	186, 201, 671, 865, 932, 963
FauI	CCCGC	1 cut(s)	842
Fnu4HI	GCNGC	3 cut(s)	477, 574, 702
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	477, 574, 702
FspBI	CTAG	2 cut(s)	411, 633
GluI	GCNGC	3 cut(s)	477, 574, 702
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	2 cut(s)	442, 975
HaeIII	GGCC	2 cut(s)	761, 767
HgaI	GACGC	2 cut(s)	153, 167
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	190, 205, 675, 869, 936, 967
HincII	GTYRAC	2 cut(s)	157, 259
HindII	GTYRAC	2 cut(s)	157, 259
HinfI	GANTC	2 cut(s)	255, 627
HphI	GGTGA	3 cut(s)	175, 319, 962
Hpy166II	GTNNAC	3 cut(s)	157, 259, 544
Hpy188I	TCNGA	6 cut(s)	143, 271, 296, 350, 394, 529
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	157, 259, 544
HpyAV	CCTTC	2 cut(s)	896, 1032
HpyCH4III	ACNGT	5 cut(s)	138, 472, 525, 548, 716
HpyCH4IV	ACGT	3 cut(s)	77, 153, 358
HpyCH4V	TGCA	4 cut(s)	164, 468, 662, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	794, 803
HpyF3I	CTNAG	2 cut(s)	684, 781
HpySE526I	ACGT	3 cut(s)	77, 153, 358
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	190, 205, 675, 869, 936, 967
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	94, 556, 748
LmnI	GCTCC	2 cut(s)	322, 803
Lsp1109I	GCAGC	3 cut(s)	488, 560, 688
LweI	GCATC	2 cut(s)	586, 784
MaeI	CTAG	2 cut(s)	411, 633
MaeII	ACGT	3 cut(s)	77, 153, 358
MaeIII	GTNAC	6 cut(s)	325, 439, 506, 548, 674, 871
MalI	GATC	3 cut(s)	96, 558, 750
MboI	GATC	3 cut(s)	94, 556, 748
MboII	GAAGA	8 cut(s)	208, 296, 605, 650, 677, 911, 937, 965
MfeI	CAATTG	2 cut(s)	480, 512
MlsI	TGGCCA	1 cut(s)	767
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	105, 431
MnlI	CCTC	8 cut(s)	109, 344, 417, 478, 617, 741, 989, 999
Mox20I	TGGCCA	1 cut(s)	767
MroXI	GAANNNNTTC	2 cut(s)	288, 726
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	5 cut(s)	111, 251, 332, 564, 603
MslI	CAYNNNNRTG	1 cut(s)	1013
Msp20I	TGGCCA	1 cut(s)	767
MspR9I	CCNGG	2 cut(s)	946, 993
MunI	CAATTG	2 cut(s)	480, 512
MvaI	CCWGG	2 cut(s)	946, 993
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	794, 803
NdeII	GATC	3 cut(s)	94, 556, 748
NlaIII	CATG	6 cut(s)	190, 205, 675, 869, 936, 967
NlaIV	GGNNCC	3 cut(s)	380, 729, 907
NmuCI	GTSAC	2 cut(s)	325, 674
NruI	TCGCGA	1 cut(s)	194
NspI	RCATGY	2 cut(s)	205, 675
NspV	TTCGAA	1 cut(s)	976
PciI	ACATGT	2 cut(s)	201, 671
PdmI	GAANNNNTTC	2 cut(s)	288, 726
PfeI	GAWTC	1 cut(s)	627
PflMI	CCANNNNNTGG	1 cut(s)	915
PfoI	TCCNGGA	1 cut(s)	991
PkrI	GCNGC	3 cut(s)	478, 575, 703
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PscI	ACATGT	2 cut(s)	201, 671
Psp6I	CCWGG	2 cut(s)	944, 991
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	2 cut(s)	944, 991
PspN4I	GGNNCC	3 cut(s)	380, 729, 907
PspPI	GGNCC	1 cut(s)	986
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	3 cut(s)	380, 887, 1019
RsaNI	GTAC	3 cut(s)	379, 886, 1018
RseI	CAYNNNNRTG	1 cut(s)	1013
SaqAI	TTAA	5 cut(s)	111, 251, 332, 564, 603
SatI	GCNGC	3 cut(s)	477, 574, 702
Sau3AI	GATC	3 cut(s)	94, 556, 748
Sau96I	GGNCC	1 cut(s)	986
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	946, 993
SfaNI	GCATC	2 cut(s)	586, 784
SfuI	TTCGAA	1 cut(s)	976
SinI	GGWCC	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	632
SsiI	CCGC	2 cut(s)	576, 849
SspMI	CTAG	2 cut(s)	411, 633
StyD4I	CCNGG	2 cut(s)	944, 991
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	5 cut(s)	138, 472, 525, 548, 716
TaiI	ACGT	3 cut(s)	80, 156, 361
TaqI	TCGA	1 cut(s)	976
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	5 cut(s)	111, 251, 332, 564, 603
Tru9I	TTAA	5 cut(s)	111, 251, 332, 564, 603
TscAI	CASTG	3 cut(s)	310, 477, 528
TseFI	GTSAC	2 cut(s)	325, 674
TseI	GCWGC	3 cut(s)	476, 573, 701
Tsp45I	GTSAC	2 cut(s)	325, 674
TspDTI	ATGAA	5 cut(s)	102, 297, 380, 735, 921
TspGWI	ACGGA	2 cut(s)	636, 903
TspRI	CASTG	3 cut(s)	310, 477, 528
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	986
XagI	CCTNNNNNAGG	1 cut(s)	993
XapI	RAATTY	5 cut(s)	89, 287, 809, 928, 969
XceI	RCATGY	2 cut(s)	205, 675
XmnI	GAANNNNTTC	2 cut(s)	288, 726
XspI	CTAG	2 cut(s)	411, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.