Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008144

Physical Location & Seq

Genomic Coordinates Forward (+)

4428743 .. 4430072

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG066000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCACAACCCCCAGCCACGTCCAACGATGAAGTTGATCCCTCTACATTTTTGAAAACATTTGAGCAATGGATGGCACAGTTCGGACGCGCTTACAGTGACAATGCAGAGAAAGAAAGGCGTCTCACCATATTCGTGAAGAACTTGTTATTTGTAAATAACTTCAACAGCCAAGGGAATAAGACTTACAAGTTAAGCGTCAACTTGTTTTCTGATATGAGCACTGAAGAATTTCTCGGACTTTACACTGGATTTCAAGCTCCCAACGTCACCTTAAACTCAAGCTCATTCCGTGGACAACGTAATATCAAATCTTTTAGGTACCAAGACCTGTCTGAAACTGATGTTCCGACTAGAATTGACTGGAGGGAACAAGGTGCTGTTACCCCCGTCAAGGAGCAAGGACAATGCAGTTCCTGTTGGGCATTTTCAGCAGTGGCAACAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAACAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAACGGTTATGAAATGGTTCCTCCCAATAGCGAAAATGATCTACTGAAGGCCGTGGCCAAGCAACCAGTCTCAGCTGCCCTTGATGCCGATGGAGATGAATTTAGGGCATACGCAAGTGGGAAGAGTGCAACAGTGAAACAAGAGGCCTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

276

Amino Acids

30.66

Weight (kDa)

4.76

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	21 - 78	1.4e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	116 - 267	3.1e-51	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06040
rosa_chinensis	RchiOBHm_Chr3g0455011 RchiOBHm_Chr3g0455051 RchiOBHm_Chr3g0455061
rosa_laevigata	RLG00000025390 RLG00000025392 RLG00000025393
rosa_multiflora	Rmu_sc0002169.1_g000011 Rmu_sc0002169.1_g000016 Rmu_sc0002169.1_g000018
rosa_roxburghii	Rroxscaffold_6G00424580
rosa_rugosa	Rorug03G0004000 Rorug03G0004000
rosa_samantha	Rh3AG063600 Rh3AG063700 Rh3AG064000 Rh3AG064200 Rh3BG065500 Rh3BG065600 Rh3BG065900 Rh3BG066000
rosa_wichuraiana	Rw3G005000 Rw3G005010 Rw3G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	540
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	2 cut(s)	230, 773
AcuI	CTGAAG	2 cut(s)	246, 740
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	394, 619
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	55, 166, 257
AhlI	ACTAGT	1 cut(s)	596
AjiI	CACGTC	1 cut(s)	21
AluBI	AGCT	3 cut(s)	260, 285, 749
AluI	AGCT	3 cut(s)	260, 285, 749
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	3 cut(s)	128, 626, 748
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	417
AoxI	GGCC	3 cut(s)	723, 729, 819
ApeKI	GCWGC	3 cut(s)	537, 665, 749
ApoI	RAATTY	2 cut(s)	230, 773
Asp700I	GAANNNNTTC	2 cut(s)	231, 690
Asp718I	GGTACC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	118, 262
BalI	TGGCCA	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	524, 652, 736
BccI	CCATC	2 cut(s)	67, 758
BceAI	ACGGC	1 cut(s)	710
BcoDI	GTCTC	3 cut(s)	128, 626, 748
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	2 cut(s)	354, 597
BisI	GCNGC	3 cut(s)	538, 666, 750
BlsI	GCNGC	3 cut(s)	539, 667, 751
BmgBI	CACGTC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	323, 693
BmsI	GCATC	2 cut(s)	550, 748
BpmI	CTGGAG	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	172, 292, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 619
Bse1I	ACTGG	3 cut(s)	253, 368, 740
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	172, 292, 726
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	394, 619
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	3 cut(s)	253, 368, 740
BseXI	GCAGC	3 cut(s)	524, 652, 736
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	725, 731, 821
BshNI	GGYRCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	394, 619
BsmAI	GTCTC	3 cut(s)	128, 626, 748
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	725, 731, 821
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	37, 520, 712
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	3 cut(s)	725, 731, 821
BspCNI	CTCAG	1 cut(s)	758
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	323, 693
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	253, 368, 740
BssECI	CCNNGG	3 cut(s)	172, 292, 726
BssMI	GATC	3 cut(s)	37, 520, 712
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	6 cut(s)	81, 98, 489, 512, 680, 808
Bst6I	CTCTTC	2 cut(s)	624, 791
BstACI	GRCGYC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	648, 745
BstDSI	CCRYGG	2 cut(s)	292, 726
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	40, 523, 715
BstMAI	GTCTC	3 cut(s)	128, 626, 748
BstMBI	GATC	3 cut(s)	37, 520, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 758
BstNSI	RCATGY	1 cut(s)	639
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	524, 652, 736
BsuRI	GGCC	3 cut(s)	725, 731, 821
BtgI	CCRYGG	2 cut(s)	292, 726
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	6 cut(s)	103, 222, 246, 441, 485, 813
CaiI	CAGNNNCTG	1 cut(s)	417
CfoI	GCGC	1 cut(s)	92
CseI	GACGC	3 cut(s)	96, 110, 187
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	636
CviJI	RGCY	9 cut(s)	17, 171, 260, 285, 537, 725, 731, 749, 821
CviKI_1	RGCY	9 cut(s)	17, 171, 260, 285, 537, 725, 731, 749, 821
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	648, 745
DpnI	GATC	3 cut(s)	39, 522, 714
DpnII	GATC	3 cut(s)	37, 520, 712
DraI	TTTAAA	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	2 cut(s)	624, 791
EarI	CTCTTC	2 cut(s)	624, 791
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	821
Eco57I	CTGAAG	2 cut(s)	246, 740
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	1 cut(s)	639
FaiI	YATR	8 cut(s)	131, 218, 554, 575, 637, 663, 684, 784
FatI	CATG	1 cut(s)	635
Fnu4HI	GCNGC	3 cut(s)	538, 666, 750
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	538, 666, 750
FspBI	CTAG	2 cut(s)	354, 597
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	538, 666, 750
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	725, 731, 821
HgaI	GACGC	3 cut(s)	96, 110, 187
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	639
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	591
HphI	GGTGA	2 cut(s)	118, 262
Hpy166II	GTNNAC	3 cut(s)	202, 296, 508
Hpy188I	TCNGA	6 cut(s)	86, 214, 239, 337, 351, 493
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	202, 296, 508
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	6 cut(s)	81, 98, 489, 512, 680, 808
HpyCH4IV	ACGT	3 cut(s)	20, 267, 301
HpyCH4V	TGCA	4 cut(s)	107, 411, 626, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 758
HpyF3I	CTNAG	2 cut(s)	648, 745
HpySE526I	ACGT	3 cut(s)	20, 267, 301
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	639
HspAI	GCGC	1 cut(s)	90
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	37, 520, 712
LmnI	GCTCC	2 cut(s)	265, 397
LpnPI	CCDG	6 cut(s)	27, 234, 344, 349, 430, 753
Lsp1109I	GCAGC	3 cut(s)	524, 652, 736
LweI	GCATC	2 cut(s)	550, 748
MaeI	CTAG	2 cut(s)	354, 597
MaeII	ACGT	3 cut(s)	20, 267, 301
MaeIII	GTNAC	6 cut(s)	98, 268, 382, 470, 512, 638
MalI	GATC	3 cut(s)	39, 522, 714
MboI	GATC	3 cut(s)	37, 520, 712
MboII	GAAGA	6 cut(s)	151, 239, 569, 614, 641, 808
MfeI	CAATTG	2 cut(s)	444, 476
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	6 cut(s)	230, 357, 444, 476, 525, 773
MluNI	TGGCCA	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	48, 374
MnlI	CCTC	6 cut(s)	52, 360, 442, 581, 705, 811
Mox20I	TGGCCA	1 cut(s)	731
MroXI	GAANNNNTTC	2 cut(s)	231, 690
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	4 cut(s)	194, 275, 528, 567
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	749
MunI	CAATTG	2 cut(s)	444, 476
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	431, 758
NdeII	GATC	3 cut(s)	37, 520, 712
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	2 cut(s)	323, 693
NmuCI	GTSAC	3 cut(s)	98, 268, 638
NspI	RCATGY	1 cut(s)	639
PceI	AGGCCT	1 cut(s)	821
PciI	ACATGT	1 cut(s)	635
PdmI	GAANNNNTTC	2 cut(s)	231, 690
PfeI	GAWTC	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	539, 667, 751
PscI	ACATGT	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	323, 693
PstNI	CAGNNNCTG	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	194, 275, 528, 567
SatI	GCNGC	3 cut(s)	538, 666, 750
Sau3AI	GATC	3 cut(s)	37, 520, 712
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	550, 748
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	6 cut(s)	230, 357, 444, 476, 525, 773
SseBI	AGGCCT	1 cut(s)	821
SsiI	CCGC	1 cut(s)	540
SspMI	CTAG	2 cut(s)	354, 597
StuI	AGGCCT	1 cut(s)	821
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	6 cut(s)	81, 98, 489, 512, 680, 808
TaiI	ACGT	3 cut(s)	23, 270, 304
TasI	AATT	6 cut(s)	230, 357, 444, 476, 525, 773
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	4 cut(s)	194, 275, 528, 567
Tru9I	TTAA	4 cut(s)	194, 275, 528, 567
TscAI	CASTG	6 cut(s)	103, 229, 253, 441, 492, 813
TseFI	GTSAC	3 cut(s)	98, 268, 638
TseI	GCWGC	3 cut(s)	537, 665, 749
Tsp45I	GTSAC	3 cut(s)	98, 268, 638
TspDTI	ATGAA	3 cut(s)	45, 699, 786
TspGWI	ACGGA	2 cut(s)	281, 600
TspRI	CASTG	6 cut(s)	103, 229, 253, 441, 492, 813
XapI	RAATTY	2 cut(s)	230, 773
XceI	RCATGY	1 cut(s)	639
XmnI	GAANNNNTTC	2 cut(s)	231, 690
XspI	CTAG	2 cut(s)	354, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.