Rh3BG065500

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008144
Physical Location & Seq
Forward (+)
4375710 .. 4377621
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG065500.1

Sequence Viewer

Length: 840 bp
ATGGCACAACCCCCAGCCACGTCCAACGATGAATTTGATCCCTCTACATTTTTTAAAACATTTGAGCAATGGATGGCACAGTTCGGACGCACTTACGATGACAATGCAGAGAGAGAAAGGCGTCTCACCATATTCGTGAAGAACTTGTTATTTGTAAATAACTTCAACAGCCAAGGGAATAAGACTTACAATTTAAGAGTCAACTTATTTTCTGATATGTCCAATGAAGAATTTCTCGGACTTTACACTGGATTTCAAGCTCCCGAGGTCACCTTAAACTCAAGCTCATTCCGAGGACAACGTAATATGAAATCTTTTAGGTACCAAGACCTGTCTGAAACTGATGTTCCAACTAGAATTGACTGGAGGGAACAAGGTGTTGTTACCCCCGTCAAGGAACAAGGACAATGCAGTTCTTGTTGGGCATTTTCAGCAGTGGCAGCAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAACGGTTATGAAATGGTTCCTCCCAATAGCGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTCGCCCTTGATGCCGATGGAGATGAATTTAGGGCATACGCAAGTGGGGTATTTTCTGAAGTGAATAGTGATGCGTTGAGACTTGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

279

Amino Acids

31.37

Weight (kDa)

4.58

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 21 - 78 2.8e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 116 - 271 2.1e-54 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 1 cut(s) 540
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 3 cut(s) 32, 230, 773
AcuI CTGAAG 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 394, 619
AflIII ACRYGT 1 cut(s) 635
AgsI TTSAA 2 cut(s) 166, 257
AhlI ACTAGT 1 cut(s) 596
AjiI CACGTC 1 cut(s) 21
AluBI AGCT 2 cut(s) 260, 285
AluI AGCT 2 cut(s) 260, 285
Alw26I GTCTC 4 cut(s) 128, 626, 748, 820
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 723, 729
ApeKI GCWGC 3 cut(s) 440, 537, 665
ApoI RAATTY 3 cut(s) 32, 230, 773
ArsI GACNNNNNNTTYG 1 cut(s) 819
Asp700I GAANNNNTTC 2 cut(s) 231, 690
Asp718I GGTACC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 118, 262
AvaI CYCGRG 1 cut(s) 263
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 452, 524, 652
BccI CCATC 2 cut(s) 67, 758
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 4 cut(s) 128, 626, 748, 820
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 2 cut(s) 354, 597
BisI GCNGC 3 cut(s) 441, 538, 666
BlsI GCNGC 3 cut(s) 442, 539, 667
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 323, 693
BmsI GCATC 3 cut(s) 550, 748, 808
BpmI CTGGAG 1 cut(s) 385
BpuEI CTTGAG 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 4 cut(s) 172, 264, 292, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 619
Bse1I ACTGG 3 cut(s) 253, 368, 740
Bse3DI GCAATG 1 cut(s) 74
BseDI CCNNGG 4 cut(s) 172, 264, 292, 726
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 394, 619
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 3 cut(s) 253, 368, 740
BseXI GCAGC 3 cut(s) 452, 524, 652
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 2 cut(s) 725, 731
BshNI GGYRCC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 394, 619
BsmAI GTCTC 4 cut(s) 128, 626, 748, 820
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 725, 731
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 3 cut(s) 37, 520, 712
BspACI CCGC 1 cut(s) 540
BspANI GGCC 2 cut(s) 725, 731
BspCNI CTCAG 1 cut(s) 758
BspLI GGNNCC 2 cut(s) 323, 693
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 74
BsrI ACTGG 3 cut(s) 253, 368, 740
BssECI CCNNGG 4 cut(s) 172, 264, 292, 726
BssMI GATC 3 cut(s) 37, 520, 712
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 4 cut(s) 81, 489, 512, 680
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 648, 745
BstDSI CCRYGG 1 cut(s) 726
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 3 cut(s) 40, 523, 715
BstMAI GTCTC 4 cut(s) 128, 626, 748, 820
BstMBI GATC 3 cut(s) 37, 520, 712
BstMWI GCNNNNNNNGC 3 cut(s) 431, 440, 758
BstNSI RCATGY 1 cut(s) 639
BstPI GGTNACC 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 452, 524, 652
BsuRI GGCC 2 cut(s) 725, 731
BtgI CCRYGG 1 cut(s) 726
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 246, 441, 485
CseI GACGC 2 cut(s) 96, 110
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 636
CviJI RGCY 7 cut(s) 17, 171, 260, 285, 537, 725, 731
CviKI_1 RGCY 7 cut(s) 17, 171, 260, 285, 537, 725, 731
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 648, 745
DpnI GATC 3 cut(s) 39, 522, 714
DpnII GATC 3 cut(s) 37, 520, 712
DraI TTTAAA 2 cut(s) 55, 568
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 639
FaiI YATR 9 cut(s) 131, 218, 308, 554, 575, 637, 663, 684, 784
FatI CATG 1 cut(s) 635
Fnu4HI GCNGC 3 cut(s) 441, 538, 666
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 441, 538, 666
FspBI CTAG 2 cut(s) 354, 597
GluI GCNGC 3 cut(s) 441, 538, 666
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 2 cut(s) 725, 731
HgaI GACGC 2 cut(s) 96, 110
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 1 cut(s) 639
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 198, 591
HphI GGTGA 2 cut(s) 118, 262
Hpy166II GTNNAC 2 cut(s) 202, 508
Hpy188I TCNGA 7 cut(s) 86, 214, 239, 293, 337, 493, 805
Hpy188III TCNNGA 2 cut(s) 136, 263
Hpy8I GTNNAC 2 cut(s) 202, 508
HpyCH4III ACNGT 4 cut(s) 81, 489, 512, 680
HpyCH4IV ACGT 2 cut(s) 20, 301
HpyCH4V TGCA 3 cut(s) 107, 411, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 440, 758
HpyF3I CTNAG 2 cut(s) 648, 745
HpySE526I ACGT 2 cut(s) 20, 301
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 639
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 37, 520, 712
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 27, 234, 344, 349, 753
Lsp1109I GCAGC 3 cut(s) 452, 524, 652
LweI GCATC 3 cut(s) 550, 748, 808
MaeI CTAG 2 cut(s) 354, 597
MaeII ACGT 2 cut(s) 20, 301
MaeIII GTNAC 5 cut(s) 268, 382, 470, 512, 638
MalI GATC 3 cut(s) 39, 522, 714
MboI GATC 3 cut(s) 37, 520, 712
MboII GAAGA 5 cut(s) 151, 239, 569, 614, 641
MfeI CAATTG 2 cut(s) 444, 476
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 8 cut(s) 32, 190, 230, 357, 444, 476, 525, 773
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 2 cut(s) 48, 374
MnlI CCTC 7 cut(s) 52, 259, 287, 360, 442, 581, 705
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 231, 690
MscI TGGCCA 1 cut(s) 731
MseI TTAA 5 cut(s) 54, 194, 275, 528, 567
MslI CAYNNNNRTG 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 731
MunI CAATTG 2 cut(s) 444, 476
MwoI GCNNNNNNNGC 3 cut(s) 431, 440, 758
NdeII GATC 3 cut(s) 37, 520, 712
NlaIII CATG 1 cut(s) 639
NlaIV GGNNCC 2 cut(s) 323, 693
NmuCI GTSAC 2 cut(s) 268, 638
NspI RCATGY 1 cut(s) 639
PciI ACATGT 1 cut(s) 635
PdmI GAANNNNTTC 2 cut(s) 231, 690
PfeI GAWTC 1 cut(s) 591
PkrI GCNGC 3 cut(s) 442, 539, 667
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 635
PspEI GGTNACC 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 323, 693
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 5 cut(s) 54, 194, 275, 528, 567
SatI GCNGC 3 cut(s) 441, 538, 666
Sau3AI GATC 3 cut(s) 37, 520, 712
SchI GAGTC 1 cut(s) 207
SetI ASST 9 cut(s) 23, 262, 270, 275, 287, 304, 323, 333, 379
SfaNI GCATC 3 cut(s) 550, 748, 808
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 280, 830
SmoI CTYRAG 2 cut(s) 280, 830
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 8 cut(s) 32, 190, 230, 357, 444, 476, 525, 773
SsiI CCGC 1 cut(s) 540
SspMI CTAG 2 cut(s) 354, 597
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 4 cut(s) 81, 489, 512, 680
TaiI ACGT 2 cut(s) 23, 304
TasI AATT 8 cut(s) 32, 190, 230, 357, 444, 476, 525, 773
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 5 cut(s) 54, 194, 275, 528, 567
Tru9I TTAA 5 cut(s) 54, 194, 275, 528, 567
TscAI CASTG 3 cut(s) 253, 441, 492
TseFI GTSAC 2 cut(s) 268, 638
TseI GCWGC 3 cut(s) 440, 537, 665
Tsp45I GTSAC 2 cut(s) 268, 638
TspDTI ATGAA 5 cut(s) 45, 240, 323, 699, 786
TspGWI ACGGA 1 cut(s) 600
TspRI CASTG 3 cut(s) 253, 441, 492
XapI RAATTY 3 cut(s) 32, 230, 773
XceI RCATGY 1 cut(s) 639
XmnI GAANNNNTTC 2 cut(s) 231, 690
XspI CTAG 2 cut(s) 354, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.