Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008144

Physical Location & Seq

Genomic Coordinates Forward (+)

4416613 .. 4417441

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG064000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTTTTCAAAATAACCTTGTTATAATTGCCATTTTATCTATCATCTTGGGGGCAATGGCACAACCCCCAGCAACGTCCAACGATGAAGTTGATCCCTCTACATTTTTGAAAACATTTGAGCAATGGATGGCACAGTTCGGACGCACTTACGGTGACAATGCAGAGAAAGAAAGGCGTCTCACCATATTCGTGAAGAACTTGTTATTTGTAAATAACTTCAACAGCCAAGGGAATAAGACTTACAAGTTAAGCGTCAACTTGTTTTCTGATATGGCCAATGAAGAATTTCTCGGACTTTACACTGGATTTCAAGCTCCCAATGTCACCTTAAACTCAAGCTCATTCCGTGGACAACGTAATATCAAATATTTTAGGTACCAAGACCTGTCTGAAACTGATGTTCCGACTAGAATTGACTGGAGGGAACAAGGTGCTGTTACCCCCGTCAAGGAACAAGGACAATGCCGTTCTTGTTGGGCATTTTCAGCAGTGGCAACAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCAGTGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

243

Amino Acids

27.65

Weight (kDa)

8.31

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	2.2e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	135 - 224	4.9e-36	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06040
rosa_chinensis	RchiOBHm_Chr3g0455011 RchiOBHm_Chr3g0455051 RchiOBHm_Chr3g0455061
rosa_laevigata	RLG00000025390 RLG00000025392 RLG00000025393
rosa_multiflora	Rmu_sc0002169.1_g000011 Rmu_sc0002169.1_g000016 Rmu_sc0002169.1_g000018
rosa_roxburghii	Rroxscaffold_6G00424580
rosa_rugosa	Rorug03G0004000 Rorug03G0004000
rosa_samantha	Rh3AG063600 Rh3AG063700 Rh3AG064000 Rh3AG064200 Rh3BG065500 Rh3BG065600 Rh3BG065900 Rh3BG066000
rosa_wichuraiana	Rw3G005000 Rw3G005010 Rw3G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	451, 676
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	4 cut(s)	11, 112, 223, 314
AhlI	ACTAGT	1 cut(s)	653
AluBI	AGCT	2 cut(s)	317, 342
AluI	AGCT	2 cut(s)	317, 342
Alw26I	GTCTC	2 cut(s)	185, 682
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	594, 721
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	288
Asp718I	GGTACC	1 cut(s)	378
AsuHPI	GGTGA	3 cut(s)	167, 175, 319
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	581, 708
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	185, 682
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	411, 654
BfmI	CTRYAG	1 cut(s)	595
BisI	GCNGC	2 cut(s)	595, 722
BlsI	GCNGC	2 cut(s)	596, 723
BmiI	GGNNCC	1 cut(s)	380
BmsI	GCATC	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	229, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 676
Bse1I	ACTGG	2 cut(s)	310, 425
Bse3DI	GCAATG	2 cut(s)	63, 131
BseDI	CCNNGG	2 cut(s)	229, 349
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	451, 676
BseMI	GCAATG	2 cut(s)	63, 131
BseNI	ACTGG	2 cut(s)	310, 425
BseXI	GCAGC	2 cut(s)	581, 708
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	701
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	451, 676
BsmAI	GTCTC	2 cut(s)	185, 682
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	94, 577
BspANI	GGCC	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	599
BspPI	GGATC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	378
BsrDI	GCAATG	2 cut(s)	63, 131
BsrI	ACTGG	2 cut(s)	310, 425
BssECI	CCNNGG	2 cut(s)	229, 349
BssMI	GATC	2 cut(s)	94, 577
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	4 cut(s)	138, 155, 546, 569
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	704
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	97, 580
BstMAI	GTCTC	2 cut(s)	185, 682
BstMBI	GATC	2 cut(s)	94, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	695
BstSFI	CTRYAG	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	581, 708
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	2 cut(s)	498, 604
BtsIMutI	CAGTG	4 cut(s)	303, 498, 542, 604
CseI	GACGC	3 cut(s)	153, 167, 244
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	1 cut(s)	692
CviJI	RGCY	6 cut(s)	5, 228, 278, 317, 342, 594
CviKI_1	RGCY	6 cut(s)	5, 228, 278, 317, 342, 594
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	704
DpnI	GATC	2 cut(s)	96, 579
DpnII	GATC	2 cut(s)	94, 577
DraI	TTTAAA	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	1 cut(s)	695
FaiI	YATR	8 cut(s)	26, 188, 275, 611, 632, 672, 693, 719
FatI	CATG	1 cut(s)	691
Fnu4HI	GCNGC	2 cut(s)	595, 722
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	595, 722
FspBI	CTAG	2 cut(s)	411, 654
GluI	GCNGC	2 cut(s)	595, 722
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	278
HgaI	GACGC	3 cut(s)	153, 167, 244
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	695
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	648
HphI	GGTGA	3 cut(s)	167, 175, 319
Hpy166II	GTNNAC	3 cut(s)	259, 353, 565
Hpy188I	TCNGA	6 cut(s)	143, 271, 296, 394, 408, 550
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	259, 353, 565
HpyCH4III	ACNGT	4 cut(s)	138, 155, 546, 569
HpyCH4IV	ACGT	2 cut(s)	77, 358
HpyCH4V	TGCA	3 cut(s)	164, 597, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	1 cut(s)	704
HpySE526I	ACGT	2 cut(s)	77, 358
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	695
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	94, 577
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	4 cut(s)	84, 291, 401, 406
Lsp1109I	GCAGC	2 cut(s)	581, 708
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	411, 654
MaeII	ACGT	2 cut(s)	77, 358
MaeIII	GTNAC	6 cut(s)	155, 325, 439, 527, 569, 694
MalI	GATC	2 cut(s)	96, 579
MboI	GATC	2 cut(s)	94, 577
MboII	GAAGA	5 cut(s)	208, 296, 626, 671, 697
MfeI	CAATTG	2 cut(s)	501, 533
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	6 cut(s)	27, 287, 414, 501, 533, 582
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	105, 431
MnlI	CCTC	4 cut(s)	109, 417, 499, 638
Mox20I	TGGCCA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	4 cut(s)	251, 332, 585, 624
MslI	CAYNNNNRTG	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	278
MunI	CAATTG	2 cut(s)	501, 533
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	2 cut(s)	94, 577
NlaIII	CATG	1 cut(s)	695
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	3 cut(s)	155, 325, 694
NspI	RCATGY	1 cut(s)	695
PciI	ACATGT	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	648
PkrI	GCNGC	2 cut(s)	596, 723
PscI	ACATGT	1 cut(s)	691
PsiI	TTATAA	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	4 cut(s)	251, 332, 585, 624
SatI	GCNGC	2 cut(s)	595, 722
Sau3AI	GATC	2 cut(s)	94, 577
SetI	ASST	9 cut(s)	21, 80, 319, 332, 344, 361, 380, 390, 436
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	6 cut(s)	27, 287, 414, 501, 533, 582
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	2 cut(s)	411, 654
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	4 cut(s)	138, 155, 546, 569
TaiI	ACGT	2 cut(s)	80, 361
TasI	AATT	6 cut(s)	27, 287, 414, 501, 533, 582
TfiI	GAWTC	1 cut(s)	648
Tru1I	TTAA	4 cut(s)	251, 332, 585, 624
Tru9I	TTAA	4 cut(s)	251, 332, 585, 624
TscAI	CASTG	4 cut(s)	310, 498, 549, 604
TseFI	GTSAC	3 cut(s)	155, 325, 694
TseI	GCWGC	2 cut(s)	594, 721
Tsp45I	GTSAC	3 cut(s)	155, 325, 694
TspDTI	ATGAA	2 cut(s)	102, 297
TspGWI	ACGGA	2 cut(s)	338, 657
TspRI	CASTG	4 cut(s)	310, 498, 549, 604
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	695
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	2 cut(s)	411, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.