Rh3AG063700

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008144
Physical Location & Seq
Forward (+)
4381164 .. 4387576
6413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG063700.1

Sequence Viewer

Length: 1194 bp
ATGGCCCGACACCCTTGTGGTGGATGGCGCTCCACCACATTTGGCAACTACATCATTGGTGGCACCCTTGCTAAATCAAAGTCATTTAGTATCAGAGAGCCCTCATTGTTATATACTGGGTGTAGTACTGCAATGGGTTTTCAAAATAACCTTGTTATAGTTGCCATTTTATCTATCATCTTGGGGGCAATGGCACAACCCCCAGCCACGACCAACGATGAATTTGATCCCTCTACATTTTTTAAAACATTTGAGGAATGGATGGCACAGTTCGGACGCACTTACGATGACAATGCAGAGAGAGAAAGGCGTCTAACCATATTCGTGAAGAACTTGTTATTTGTAAATAACTTCAACAGCCAAGGGAATAAGACTTTCAAGTTAAGAGTCAACTTATTTTCTGATATGTCCAATGAAGAATTTCTCGGACTTTACACTGGATTTCAAGCTCCCGAGGTCACCTTAAACTCAAGCTCATTCCGAGGACAACGTAATATGAAATCTTTTAGGTACCAAGACCTGTCTGAAACTGATGTTCCAACTAGAATTGACTGGAGGGAACAAGGTGTTGTTACCCCCGTCAAGGAACAAGGACAATGCAGTTCTTGTTGGGCATTTTCAGCAGTGGCAGCAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGGGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAACGGTTATGAAATGGTTCCTCCCAATAGCGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTCGCCCTTGATGCCGATGGAGATGAATTTAGGGCATACGCAAGTGGGGTATTTTCTGGTAATTGCGGGACAAAACTAACCCATGCTGTTACAATCGTTGGGTACGGAACGACTGAAGAAGGCACCAACTATTGGTTAGTGAAGAATTCATGGGGCGAAACCTGGGGTGAAAAGGGCTACATGAGAATTCTTCGAAATGCTGGTCCTCCAGGAGGTTTGTGCGGCATTGCTATGTACCCTTCTTATCCAACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

397

Amino Acids

43.89

Weight (kDa)

5.19

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 84 - 141 2.8e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 179 - 396 1.2e-80 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 510
AccB1I GGYRCC 3 cut(s) 62, 510, 1058
AccB7I CCANNNNNTGG 1 cut(s) 1068
AciI CCGC 3 cut(s) 729, 1002, 1158
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 5 cut(s) 221, 419, 962, 1081, 1122
AcuI CTGAAG 1 cut(s) 1071
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 4 cut(s) 127, 512, 1040, 1172
AfiI CCNNNNNNNGG 5 cut(s) 20, 583, 808, 1068, 1148
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 4 cut(s) 143, 355, 379, 446
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 2 cut(s) 1097, 1144
AleI CACNNNNGTG 1 cut(s) 15
AluBI AGCT 2 cut(s) 449, 474
AluI AGCT 2 cut(s) 449, 474
Alw26I GTCTC 2 cut(s) 815, 937
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 3 cut(s) 3, 912, 918
ApeKI GCWGC 3 cut(s) 629, 726, 854
ApoI RAATTY 5 cut(s) 221, 419, 962, 1081, 1122
ArsI GACNNNNNNTTYG 2 cut(s) 1123, 1155
Asp700I GAANNNNTTC 2 cut(s) 420, 879
Asp718I GGTACC 1 cut(s) 510
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 4, 1139
AsuHPI GGTGA 2 cut(s) 451, 1115
AsuII TTCGAA 1 cut(s) 1129
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 1139
BalI TGGCCA 1 cut(s) 920
BanI GGYRCC 3 cut(s) 62, 510, 1058
BanII GRGCYC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 641, 713, 841
BccI CCATC 3 cut(s) 18, 256, 947
BceAI ACGGC 1 cut(s) 899
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 2 cut(s) 1099, 1146
BcoDI GTCTC 2 cut(s) 815, 937
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 2 cut(s) 543, 786
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 4 cut(s) 630, 727, 855, 1159
BlsI GCNGC 4 cut(s) 631, 728, 856, 1160
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 2 cut(s) 1099, 1146
Bme18I GGWCC 1 cut(s) 1139
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 4, 1139
BmiI GGNNCC 4 cut(s) 64, 512, 882, 1060
BmrFI CCNGG 2 cut(s) 1099, 1146
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 739, 937
BmuI ACTGGG 1 cut(s) 126
BpmI CTGGAG 2 cut(s) 574, 1128
Bpu14I TTCGAA 1 cut(s) 1129
BpuEI CTTGAG 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 5 cut(s) 361, 453, 481, 915, 1098
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 583, 808, 1068, 1148
Bse1I ACTGG 4 cut(s) 121, 442, 557, 929
Bse3DI GCAATG 3 cut(s) 138, 195, 1161
BseBI CCWGG 2 cut(s) 1099, 1146
BseDI CCNNGG 5 cut(s) 361, 453, 481, 915, 1098
BseGI GGATG 2 cut(s) 29, 267
BseLI CCNNNNNNNGG 5 cut(s) 20, 583, 808, 1068, 1148
BseMI GCAATG 3 cut(s) 138, 195, 1161
BseMII CTCAG 1 cut(s) 948
BseNI ACTGG 4 cut(s) 121, 442, 557, 929
BseXI GCAGC 3 cut(s) 641, 713, 841
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 834
BshFI GGCC 3 cut(s) 5, 914, 920
BshNI GGYRCC 3 cut(s) 62, 510, 1058
BsiHKCI CYCGRG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 5 cut(s) 20, 583, 808, 1068, 1148
BsmAI GTCTC 2 cut(s) 815, 937
BsmFI GGGAC 1 cut(s) 1018
BsnI GGCC 3 cut(s) 5, 914, 920
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 1129
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 226, 709, 901
BspACI CCGC 3 cut(s) 729, 1002, 1158
BspANI GGCC 3 cut(s) 5, 914, 920
BspCNI CTCAG 1 cut(s) 947
BspLI GGNNCC 4 cut(s) 64, 512, 882, 1060
BspPI GGATC 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 1129
BspT107I GGYRCC 3 cut(s) 62, 510, 1058
BsrDI GCAATG 3 cut(s) 138, 195, 1161
BsrI ACTGG 4 cut(s) 121, 442, 557, 929
BssECI CCNNGG 5 cut(s) 361, 453, 481, 915, 1098
BssMI GATC 3 cut(s) 226, 709, 901
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 1099, 1146
Bst4CI ACNGT 4 cut(s) 270, 678, 701, 869
Bst6I CTCTTC 1 cut(s) 813
BstACI GRCGYC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 1129
BstDEI CTNAG 2 cut(s) 837, 934
BstDSI CCRYGG 1 cut(s) 915
BstEII GGTNACC 1 cut(s) 457
BstENI CCTNNNNNAGG 1 cut(s) 1146
BstF5I GGATG 2 cut(s) 29, 267
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 229, 712, 904
BstMAI GTCTC 2 cut(s) 815, 937
BstMBI GATC 3 cut(s) 226, 709, 901
BstMWI GCNNNNNNNGC 3 cut(s) 620, 629, 947
BstNI CCWGG 2 cut(s) 1099, 1146
BstNSI RCATGY 1 cut(s) 828
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 1097, 1144
BstV1I GCAGC 3 cut(s) 641, 713, 841
BsuRI GGCC 3 cut(s) 5, 914, 920
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 2 cut(s) 29, 267
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 435, 630, 674
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 4, 1139
CseI GACGC 2 cut(s) 285, 299
Csp6I GTAC 4 cut(s) 126, 511, 1039, 1171
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 4 cut(s) 825, 1019, 1086, 1117
CviQI GTAC 4 cut(s) 126, 511, 1039, 1171
DdeI CTNAG 2 cut(s) 837, 934
DpnI GATC 3 cut(s) 228, 711, 903
DpnII GATC 3 cut(s) 226, 709, 901
DraI TTTAAA 2 cut(s) 244, 757
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Eco130I CCWWGG 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 1139
Eco57I CTGAAG 1 cut(s) 1071
Eco88I CYCGRG 1 cut(s) 452
Eco91I GGTNACC 1 cut(s) 457
EcoNI CCTNNNNNAGG 1 cut(s) 1146
EcoO65I GGTNACC 1 cut(s) 457
EcoRI GAATTC 2 cut(s) 1081, 1122
EcoRII CCWGG 2 cut(s) 1097, 1144
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 4 cut(s) 828, 1022, 1089, 1120
FaqI GGGAC 1 cut(s) 1018
FatI CATG 4 cut(s) 824, 1018, 1085, 1116
FauI CCCGC 2 cut(s) 722, 995
Fnu4HI GCNGC 4 cut(s) 630, 727, 855, 1159
FokI GGATG 2 cut(s) 36, 274
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 630, 727, 855, 1159
FspBI CTAG 2 cut(s) 543, 786
GlaI GCGC 1 cut(s) 29
GluI GCNGC 4 cut(s) 630, 727, 855, 1159
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 2 cut(s) 574, 1128
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 3 cut(s) 5, 914, 920
HgaI GACGC 2 cut(s) 285, 299
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 4 cut(s) 828, 1022, 1089, 1120
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 387, 780
HphI GGTGA 2 cut(s) 451, 1115
Hpy166II GTNNAC 2 cut(s) 391, 697
Hpy188I TCNGA 7 cut(s) 95, 275, 403, 428, 482, 526, 682
Hpy188III TCNNGA 2 cut(s) 325, 452
Hpy8I GTNNAC 2 cut(s) 391, 697
HpyAV CCTTC 2 cut(s) 1049, 1185
HpyCH4III ACNGT 4 cut(s) 270, 678, 701, 869
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 5 cut(s) 131, 296, 600, 815, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 620, 629, 947
HpyF3I CTNAG 2 cut(s) 837, 934
HpySE526I ACGT 1 cut(s) 490
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 4 cut(s) 828, 1022, 1089, 1120
HspAI GCGC 1 cut(s) 28
KpnI GGTACC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 226, 709, 901
LmnI GCTCC 2 cut(s) 35, 454
Lsp1109I GCAGC 3 cut(s) 641, 713, 841
LweI GCATC 2 cut(s) 739, 937
MaeI CTAG 2 cut(s) 543, 786
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 6 cut(s) 457, 571, 659, 701, 827, 1024
MalI GATC 3 cut(s) 228, 711, 903
MboI GATC 3 cut(s) 226, 709, 901
MboII GAAGA 8 cut(s) 340, 428, 758, 803, 830, 1064, 1090, 1118
MfeI CAATTG 2 cut(s) 633, 665
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 920
MluNI TGGCCA 1 cut(s) 920
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 563
Mox20I TGGCCA 1 cut(s) 920
MroXI GAANNNNTTC 2 cut(s) 420, 879
MscI TGGCCA 1 cut(s) 920
MseI TTAA 5 cut(s) 243, 383, 464, 717, 756
MslI CAYNNNNRTG 3 cut(s) 15, 323, 1166
Msp20I TGGCCA 1 cut(s) 920
MspR9I CCNGG 2 cut(s) 1099, 1146
MunI CAATTG 2 cut(s) 633, 665
MvaI CCWGG 2 cut(s) 1099, 1146
MwoI GCNNNNNNNGC 3 cut(s) 620, 629, 947
NdeII GATC 3 cut(s) 226, 709, 901
NlaIII CATG 4 cut(s) 828, 1022, 1089, 1120
NlaIV GGNNCC 4 cut(s) 64, 512, 882, 1060
NmuCI GTSAC 2 cut(s) 457, 827
NspI RCATGY 1 cut(s) 828
NspV TTCGAA 1 cut(s) 1129
OliI CACNNNNGTG 1 cut(s) 15
PciI ACATGT 1 cut(s) 824
PdmI GAANNNNTTC 2 cut(s) 420, 879
PfeI GAWTC 1 cut(s) 780
PflMI CCANNNNNTGG 1 cut(s) 1068
PfoI TCCNGGA 1 cut(s) 1144
PkrI GCNGC 4 cut(s) 631, 728, 856, 1160
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PscI ACATGT 1 cut(s) 824
Psp6I CCWGG 2 cut(s) 1097, 1144
PspEI GGTNACC 1 cut(s) 457
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 2 cut(s) 1097, 1144
PspN4I GGNNCC 4 cut(s) 64, 512, 882, 1060
PspPI GGNCC 2 cut(s) 4, 1139
RsaI GTAC 4 cut(s) 127, 512, 1040, 1172
RsaNI GTAC 4 cut(s) 126, 511, 1039, 1171
RseI CAYNNNNRTG 3 cut(s) 15, 323, 1166
SaqAI TTAA 5 cut(s) 243, 383, 464, 717, 756
SatI GCNGC 4 cut(s) 630, 727, 855, 1159
Sau3AI GATC 3 cut(s) 226, 709, 901
Sau96I GGNCC 2 cut(s) 4, 1139
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 2 cut(s) 1099, 1146
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 739, 937
SfuI TTCGAA 1 cut(s) 1129
SinI GGWCC 1 cut(s) 1139
SmiMI CAYNNNNRTG 3 cut(s) 15, 323, 1166
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 785
SsiI CCGC 3 cut(s) 729, 1002, 1158
SspMI CTAG 2 cut(s) 543, 786
StyD4I CCNGG 2 cut(s) 1097, 1144
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 4 cut(s) 270, 678, 701, 869
TaiI ACGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 1129
TatI WGTACW 1 cut(s) 125
TauI GCSGC 1 cut(s) 1161
TfiI GAWTC 1 cut(s) 780
Tru1I TTAA 5 cut(s) 243, 383, 464, 717, 756
Tru9I TTAA 5 cut(s) 243, 383, 464, 717, 756
TscAI CASTG 3 cut(s) 442, 630, 681
TseFI GTSAC 2 cut(s) 457, 827
TseI GCWGC 3 cut(s) 629, 726, 854
Tsp45I GTSAC 2 cut(s) 457, 827
TspDTI ATGAA 6 cut(s) 234, 429, 512, 888, 975, 1074
TspGWI ACGGA 2 cut(s) 789, 1056
TspRI CASTG 3 cut(s) 442, 630, 681
Van91I CCANNNNNTGG 1 cut(s) 1068
VpaK11BI GGWCC 1 cut(s) 1139
XagI CCTNNNNNAGG 1 cut(s) 1146
XapI RAATTY 5 cut(s) 221, 419, 962, 1081, 1122
XceI RCATGY 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 420, 879
XspI CTAG 2 cut(s) 543, 786
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.