Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008144

Physical Location & Seq

Genomic Coordinates Forward (+)

4182232 .. 4183388

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTTTTCAAAATAACCTTGTTATAGTTGCCATTTTATCTATCATCTTGGGGGCAATGGCACAACCCCCAGCCACGTCCAACGATGAATTTGATCCCTCTACATTTTTTAAAACATTTGAGCAATGGATGGCACAGTTCGGACGCACTTACGTTGACAATGCAGAGAAAGAAAGGCGTCTCACCATGTTCGCGAAGAATTTGTTATTTGTAAATAACTTCAACAGCCAAGGGAATAAGACTTACAAGTTAAGAGTCAACTTGTTTTCTGATATGTCCAATGAAGAATTTCTCGGACTTTACACTGGATTTCAAGCTCCCAATGTCACCTTAAACTCAAGCTCATTCCGAGGACAACGTAATATGAAATCTTTTAGGTACCAAGACCTGTCTGAAACTGATTTTCCAACTAGAATTGACTGGAGGGAACAAGGTGCTGTTACCCCCGTCAAGGAACAAGGACAATGCAGTTCTTGTTGGGCATTTTCAGCAGTGGCAGCAATTGAGGGCATTACCAAAATCAGAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGATCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCCTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAACGGTTATGAAATGGTTCCTCCCAACAGCGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTCGCCCTTGATGCCGATGGAGCTGAATTTAGGGCATACGCAAGTGGGGTATTTTCTGGTAATTGCGGGACAAAACTAACCCATGCTGTTACAATCGTTGGGTACGGAACGACTGAAGAAGGCACCAACTATTGGTTAGTGAAGAATTCATGGGGCGAAACCTGGGGTGAAAAGGGCTACATGAGAATTCTTCGAAATGCTGGTCCTCCAGGAGGTTTGTGTGGCATTGCTATGTACCCTTCTTATCCAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

353

Amino Acids

39.14

Weight (kDa)

5.06

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	6.1e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	136 - 352	1.1e-80	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06040
rosa_chinensis	RchiOBHm_Chr3g0455011 RchiOBHm_Chr3g0455051 RchiOBHm_Chr3g0455061
rosa_laevigata	RLG00000025390 RLG00000025392 RLG00000025393
rosa_multiflora	Rmu_sc0002169.1_g000011 Rmu_sc0002169.1_g000016 Rmu_sc0002169.1_g000018
rosa_roxburghii	Rroxscaffold_6G00424580
rosa_rugosa	Rorug03G0004000 Rorug03G0004000
rosa_samantha	Rh3AG063600 Rh3AG063700 Rh3AG064000 Rh3AG064200 Rh3BG065500 Rh3BG065600 Rh3BG065900 Rh3BG066000
rosa_wichuraiana	Rw3G005000 Rw3G005010 Rw3G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	378, 926
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccII	CGCG	1 cut(s)	194
AciI	CCGC	2 cut(s)	597, 870
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	6 cut(s)	89, 199, 287, 830, 949, 990
AcuI	CTGAAG	1 cut(s)	939
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	3 cut(s)	380, 908, 1040
AfiI	CCNNNNNNNGG	4 cut(s)	451, 676, 936, 1016
AflIII	ACRYGT	1 cut(s)	692
AgsI	TTSAA	3 cut(s)	11, 223, 314
AhlI	ACTAGT	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	2 cut(s)	965, 1012
AluBI	AGCT	3 cut(s)	317, 342, 827
AluI	AGCT	3 cut(s)	317, 342, 827
Alw26I	GTCTC	3 cut(s)	185, 683, 805
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	780, 786
ApeKI	GCWGC	3 cut(s)	497, 594, 722
ApoI	RAATTY	6 cut(s)	89, 199, 287, 830, 949, 990
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
Asp700I	GAANNNNTTC	2 cut(s)	288, 747
Asp718I	GGTACC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	1007
AsuHPI	GGTGA	3 cut(s)	175, 319, 983
AsuII	TTCGAA	1 cut(s)	997
AvaII	GGWCC	1 cut(s)	1007
BalI	TGGCCA	1 cut(s)	788
BanI	GGYRCC	2 cut(s)	378, 926
BbvI	GCAGC	3 cut(s)	509, 581, 709
BccI	CCATC	2 cut(s)	124, 815
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	2 cut(s)	967, 1014
BcoDI	GTCTC	3 cut(s)	185, 683, 805
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	2 cut(s)	411, 654
BisI	GCNGC	3 cut(s)	498, 595, 723
BlsI	GCNGC	3 cut(s)	499, 596, 724
Bme1390I	CCNGG	2 cut(s)	967, 1014
Bme18I	GGWCC	1 cut(s)	1007
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	1007
BmiI	GGNNCC	3 cut(s)	380, 750, 928
BmrFI	CCNGG	2 cut(s)	967, 1014
BmsI	GCATC	2 cut(s)	607, 805
BpmI	CTGGAG	2 cut(s)	442, 996
Bpu14I	TTCGAA	1 cut(s)	997
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	4 cut(s)	229, 349, 783, 966
Bsc4I	CCNNNNNNNGG	4 cut(s)	451, 676, 936, 1016
Bse1I	ACTGG	3 cut(s)	310, 425, 797
Bse3DI	GCAATG	3 cut(s)	63, 131, 1029
BseBI	CCWGG	2 cut(s)	967, 1014
BseDI	CCNNGG	4 cut(s)	229, 349, 783, 966
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	4 cut(s)	451, 676, 936, 1016
BseMI	GCAATG	3 cut(s)	63, 131, 1029
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	3 cut(s)	310, 425, 797
BseXI	GCAGC	3 cut(s)	509, 581, 709
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	782, 788
BshNI	GGYRCC	2 cut(s)	378, 926
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	4 cut(s)	451, 676, 936, 1016
BsmAI	GTCTC	3 cut(s)	185, 683, 805
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	2 cut(s)	782, 788
Bsp119I	TTCGAA	1 cut(s)	997
Bsp143I	GATC	3 cut(s)	94, 577, 769
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	2 cut(s)	597, 870
BspANI	GGCC	2 cut(s)	782, 788
BspCNI	CTCAG	1 cut(s)	815
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	380, 750, 928
BspPI	GGATC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	997
BspT107I	GGYRCC	2 cut(s)	378, 926
BsrDI	GCAATG	3 cut(s)	63, 131, 1029
BsrI	ACTGG	3 cut(s)	310, 425, 797
BssECI	CCNNGG	4 cut(s)	229, 349, 783, 966
BssMI	GATC	3 cut(s)	94, 577, 769
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	967, 1014
Bst4CI	ACNGT	4 cut(s)	138, 546, 569, 737
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	997
BstDEI	CTNAG	2 cut(s)	705, 802
BstDSI	CCRYGG	1 cut(s)	783
BstENI	CCTNNNNNAGG	1 cut(s)	1014
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	3 cut(s)	97, 580, 772
BstMAI	GTCTC	3 cut(s)	185, 683, 805
BstMBI	GATC	3 cut(s)	94, 577, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 497, 815, 824
BstNI	CCWGG	2 cut(s)	967, 1014
BstNSI	RCATGY	1 cut(s)	696
BstSCI	CCNGG	2 cut(s)	965, 1012
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	509, 581, 709
BsuRI	GGCC	2 cut(s)	782, 788
BtgI	CCRYGG	1 cut(s)	783
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	303, 498, 542
BtuMI	TCGCGA	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	1007
CseI	GACGC	2 cut(s)	153, 167
Csp6I	GTAC	3 cut(s)	379, 907, 1039
CviAII	CATG	5 cut(s)	187, 693, 887, 954, 985
CviQI	GTAC	3 cut(s)	379, 907, 1039
DdeI	CTNAG	2 cut(s)	705, 802
DpnI	GATC	3 cut(s)	96, 579, 771
DpnII	GATC	3 cut(s)	94, 577, 769
DraI	TTTAAA	2 cut(s)	112, 625
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	1007
Eco57I	CTGAAG	1 cut(s)	939
EcoNI	CCTNNNNNAGG	1 cut(s)	1014
EcoRI	GAATTC	2 cut(s)	949, 990
EcoRII	CCWGG	2 cut(s)	965, 1012
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	5 cut(s)	190, 696, 890, 957, 988
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	5 cut(s)	186, 692, 886, 953, 984
FauI	CCCGC	1 cut(s)	863
Fnu4HI	GCNGC	3 cut(s)	498, 595, 723
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	498, 595, 723
FspBI	CTAG	2 cut(s)	411, 654
GluI	GCNGC	3 cut(s)	498, 595, 723
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	2 cut(s)	442, 996
HaeIII	GGCC	2 cut(s)	782, 788
HgaI	GACGC	2 cut(s)	153, 167
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	5 cut(s)	190, 696, 890, 957, 988
HincII	GTYRAC	2 cut(s)	157, 259
HindII	GTYRAC	2 cut(s)	157, 259
HinfI	GANTC	2 cut(s)	255, 648
HphI	GGTGA	3 cut(s)	175, 319, 983
Hpy166II	GTNNAC	3 cut(s)	157, 259, 565
Hpy188I	TCNGA	7 cut(s)	143, 271, 296, 350, 394, 524, 550
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	157, 259, 565
HpyAV	CCTTC	2 cut(s)	917, 1053
HpyCH4III	ACNGT	4 cut(s)	138, 546, 569, 737
HpyCH4IV	ACGT	3 cut(s)	77, 153, 358
HpyCH4V	TGCA	4 cut(s)	164, 468, 683, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 497, 815, 824
HpyF3I	CTNAG	2 cut(s)	705, 802
HpySE526I	ACGT	3 cut(s)	77, 153, 358
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	5 cut(s)	190, 696, 890, 957, 988
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	94, 577, 769
LmnI	GCTCC	2 cut(s)	322, 824
Lsp1109I	GCAGC	3 cut(s)	509, 581, 709
LweI	GCATC	2 cut(s)	607, 805
MaeI	CTAG	2 cut(s)	411, 654
MaeII	ACGT	3 cut(s)	77, 153, 358
MaeIII	GTNAC	6 cut(s)	325, 439, 527, 569, 695, 892
MalI	GATC	3 cut(s)	96, 579, 771
MboI	GATC	3 cut(s)	94, 577, 769
MboII	GAAGA	8 cut(s)	208, 296, 626, 671, 698, 932, 958, 986
MfeI	CAATTG	2 cut(s)	501, 533
MlsI	TGGCCA	1 cut(s)	788
MluNI	TGGCCA	1 cut(s)	788
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	105, 431
MnlI	CCTC	8 cut(s)	109, 344, 417, 499, 638, 762, 1010, 1020
Mox20I	TGGCCA	1 cut(s)	788
MroXI	GAANNNNTTC	2 cut(s)	288, 747
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	5 cut(s)	111, 251, 332, 585, 624
MslI	CAYNNNNRTG	1 cut(s)	1034
Msp20I	TGGCCA	1 cut(s)	788
MspR9I	CCNGG	2 cut(s)	967, 1014
MunI	CAATTG	2 cut(s)	501, 533
MvaI	CCWGG	2 cut(s)	967, 1014
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	488, 497, 815, 824
NdeII	GATC	3 cut(s)	94, 577, 769
NlaIII	CATG	5 cut(s)	190, 696, 890, 957, 988
NlaIV	GGNNCC	3 cut(s)	380, 750, 928
NmuCI	GTSAC	2 cut(s)	325, 695
NruI	TCGCGA	1 cut(s)	194
NspI	RCATGY	1 cut(s)	696
NspV	TTCGAA	1 cut(s)	997
PciI	ACATGT	1 cut(s)	692
PdmI	GAANNNNTTC	2 cut(s)	288, 747
PfeI	GAWTC	1 cut(s)	648
PflMI	CCANNNNNTGG	1 cut(s)	936
PfoI	TCCNGGA	1 cut(s)	1012
PkrI	GCNGC	3 cut(s)	499, 596, 724
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PscI	ACATGT	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	965, 1012
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	2 cut(s)	965, 1012
PspN4I	GGNNCC	3 cut(s)	380, 750, 928
PspPI	GGNCC	1 cut(s)	1007
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	3 cut(s)	380, 908, 1040
RsaNI	GTAC	3 cut(s)	379, 907, 1039
RseI	CAYNNNNRTG	1 cut(s)	1034
SaqAI	TTAA	5 cut(s)	111, 251, 332, 585, 624
SatI	GCNGC	3 cut(s)	498, 595, 723
Sau3AI	GATC	3 cut(s)	94, 577, 769
Sau96I	GGNCC	1 cut(s)	1007
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	967, 1014
SfaNI	GCATC	2 cut(s)	607, 805
SfuI	TTCGAA	1 cut(s)	997
SinI	GGWCC	1 cut(s)	1007
SmiMI	CAYNNNNRTG	1 cut(s)	1034
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	653
SsiI	CCGC	2 cut(s)	597, 870
SspMI	CTAG	2 cut(s)	411, 654
StyD4I	CCNGG	2 cut(s)	965, 1012
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	4 cut(s)	138, 546, 569, 737
TaiI	ACGT	3 cut(s)	80, 156, 361
TaqI	TCGA	1 cut(s)	997
TfiI	GAWTC	1 cut(s)	648
Tru1I	TTAA	5 cut(s)	111, 251, 332, 585, 624
Tru9I	TTAA	5 cut(s)	111, 251, 332, 585, 624
TscAI	CASTG	3 cut(s)	310, 498, 549
TseFI	GTSAC	2 cut(s)	325, 695
TseI	GCWGC	3 cut(s)	497, 594, 722
Tsp45I	GTSAC	2 cut(s)	325, 695
TspDTI	ATGAA	5 cut(s)	102, 297, 380, 756, 942
TspGWI	ACGGA	2 cut(s)	657, 924
TspRI	CASTG	3 cut(s)	310, 498, 549
Van91I	CCANNNNNTGG	1 cut(s)	936
VpaK11BI	GGWCC	1 cut(s)	1007
XagI	CCTNNNNNAGG	1 cut(s)	1014
XapI	RAATTY	6 cut(s)	89, 199, 287, 830, 949, 990
XceI	RCATGY	1 cut(s)	696
XmnI	GAANNNNTTC	2 cut(s)	288, 747
XspI	CTAG	2 cut(s)	411, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.