RchiOBHm_Chr3g0466691

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004926
Physical Location & Seq
Forward (+)
13088287 .. 13088628
342 bp
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UTR
Exon/CDS
Intron
PRQ43274

Sequence Viewer

Length: 342 bp
ATGAGGATGGTAAGAAGAGCGATTTCGAAGAGTATGAATCGGCGACACAAGTCGGCTGTGACGCCGAAAGAAATGGAGTCGGAGAAAATCAGCGAGGAGTTGAATCCGAGTAGTACTAACTTGAGCAGCCATGCGAGTTTGAGTGGAAATGAGAATGGGATTGGGGATTTCTCAATGGAAAGTCAGAATCTTCAGTGGGCTCAAGGGAAGGCGGGTGAGGATCGAGACGTGGTTTCTGATGAGCATGGTTGGGTGTTTGTGGGGATTTATGATGGGTTTAATGGCCCTGATGCTCCTAATTATTTGTTGTCGAATCTTTACTCTGCTGTGCATGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

113

Amino Acids

12.56

Weight (kDa)

5.15

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 1 cut(s) 103
AjiI CACGTC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 228
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 219
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 284
BmsI GCATC 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 2 cut(s) 142, 186
BsaHI GRCGYC 1 cut(s) 62
BseGI GGATG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 138
BshFI GGCC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsnI GGCC 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 228
BspQI GCTCTTC 1 cut(s) 10
BspT104I TTCGAA 1 cut(s) 26
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 10, 23
BstACI GRCGYC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 26
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 285
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 114
CviAII CATG 3 cut(s) 131, 245, 332
CviJI RGCY 4 cut(s) 56, 129, 200, 285
CviKI_1 RGCY 4 cut(s) 56, 129, 200, 285
CviQI GTAC 1 cut(s) 114
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 10, 23
EarI CTCTTC 2 cut(s) 10, 23
Eco24I GRGCYC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 3 cut(s) 134, 248, 335
FaiI YATR 5 cut(s) 35, 132, 246, 270, 333
FatI CATG 3 cut(s) 130, 244, 331
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 285
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 134, 248, 335
HinfI GANTC 5 cut(s) 37, 77, 103, 187, 313
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 4 cut(s) 82, 108, 186, 238
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 134, 248, 335
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 1 cut(s) 300
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 280
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 27, 40, 182
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 3 cut(s) 88, 211, 328
MseI TTAA 1 cut(s) 279
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 134, 248, 335
NmuCI GTSAC 1 cut(s) 58
NspV TTCGAA 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 10
PfeI GAWTC 4 cut(s) 37, 103, 187, 313
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PshAI GACNNNNGTC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 202
SetI ASST 1 cut(s) 231
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 121, 201
SmoI CTYRAG 2 cut(s) 121, 201
Sse9I AATT 1 cut(s) 298
SsiI CCGC 1 cut(s) 212
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 26, 223, 311
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 4 cut(s) 37, 103, 187, 313
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.