Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411995.1

Orthogroup ID

OG0004926

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 705

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411995.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 704 bp

atgggcaacgccatcgcaaaggtctctcactgctgctctgtcgccggcgatgtctccaggcgccacgacgtcgacgtcgtctcccccgacgagggtctcggccactccttctactacattcgccgcccagaaatgatctcccccacgacctcgtttgaggcttcctctgaggagttccccaacccggctaccaccacgttccggtcaatctccggcgcctccgtcagcgccaacacgttcacgccgctctctactacactgtatgatctctaccccgacagctccggtgttctcgatcgtgctgctaggtttgagagctctacttcgttcgcttcgattcctctgcagccggttcctcggaacccgggacttccggggtccggtcctgctgaaagaggcttcttgtccggtccgatcgagcgggggttcatgtccggtccgattgataggttggtgtgttcgggtccgattgagaagcagtccgagaagatggagagaagcctctcttttgggcttgagaaaaagcccaagagaaggaatttgatgaggatgataagaagagcgatttcgaagagtatgaatcggcggcacaagtcggctgtgacgccgaaagaaacggagtcggagaaaatcggcgaggagttgaatccgagtagtactaacttgagcagccatgcgagtttgagtggaaatgagaatgggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

234

Amino Acids

25.38

Weight (kDa)

8.81

Isoelectric Point (pI)

64.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02400
fragaria_vesca	FvH4_6g13730
malus_domestica	MD04G1128600.v1.1 MD12G1141300.v1.1
prunus_persica	Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1
pyrus_communis	pycom04g11690
rosa_chinensis	RchiOBHm_Chr3g0466621 RchiOBHm_Chr3g0466691 RchiOBHm_Chr3g0466701
rosa_laevigata	RLG00000024560
rosa_multiflora	Rmu_co8411995.1_g000001 Rmu_sc0001726.1_g000001 Rmu_sc0008845.1_g000002 Rmu_sc0008845.1_g000005 Rmu_sc0023740.1_g000001 Rmu_sc0037733.1_g000001 Rmu_sc0039423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403980 Rroxscaffold_6G00414300 Rroxscaffold_6G00414310
rosa_rugosa	Rorug03G0083100
rosa_samantha	Rh3AG130000 Rh3AG130300 Rh3AG130400 Rh3BG151400 Rh3CG151200 Rh3DG152100
rosa_wichuraiana	Rw3G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	2 cut(s)	72, 78
AccB1I	GGYRCC	2 cut(s)	60, 215
AccBSI	CCGCTC	2 cut(s)	247, 421
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	4 cut(s)	124, 245, 421, 586
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	538
AcyI	GRCGYC	5 cut(s)	61, 69, 75, 216, 605
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	6 cut(s)	91, 92, 184, 201, 380, 534
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	282, 318
AluI	AGCT	2 cut(s)	282, 318
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	4 cut(s)	28, 58, 85, 101
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	33, 302, 346, 669
ApoI	RAATTY	1 cut(s)	538
AspLEI	GCGC	3 cut(s)	63, 218, 230
AspS9I	GGNCC	5 cut(s)	378, 383, 410, 437, 464
AsuC2I	CCSGG	4 cut(s)	185, 365, 366, 375
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	5 cut(s)	378, 383, 410, 437, 464
BanI	GGYRCC	2 cut(s)	60, 215
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	4 cut(s)	20, 289, 358, 681
BccI	CCATC	2 cut(s)	20, 484
BcgI	CGANNNNNNTGC	5 cut(s)	29, 284, 318, 325, 359
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	4 cut(s)	185, 365, 366, 375
BcoDI	GTCTC	4 cut(s)	28, 58, 85, 101
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	3 cut(s)	64, 219, 231
BisI	GCNGC	7 cut(s)	34, 124, 245, 303, 347, 587, 670
BlsI	GCNGC	7 cut(s)	35, 125, 246, 304, 348, 588, 671
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	5 cut(s)	58, 185, 365, 366, 375
Bme18I	GGWCC	5 cut(s)	378, 383, 410, 437, 464
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	5 cut(s)	378, 383, 410, 437, 464
BmiI	GGNNCC	6 cut(s)	62, 217, 354, 362, 379, 465
BmrFI	CCNGG	5 cut(s)	58, 185, 365, 366, 375
BoxI	GACNNNNGTC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	569
BpuEI	CTTGAG	2 cut(s)	536, 685
BpuMI	CCSGG	4 cut(s)	185, 365, 366, 375
BsaHI	GRCGYC	5 cut(s)	61, 69, 75, 216, 605
BsaI	GGTCTC	2 cut(s)	28, 101
BsaJI	CCNNGG	3 cut(s)	356, 364, 374
BsaWI	WCCGGW	5 cut(s)	201, 284, 380, 407, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 92, 184, 201, 380, 534
Bse118I	RCCGGY	2 cut(s)	44, 349
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	356, 364, 374
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	6 cut(s)	91, 92, 184, 201, 380, 534
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	2 cut(s)	185, 653
BseXI	GCAGC	4 cut(s)	20, 289, 358, 681
Bsh1285I	CGRYCG	2 cut(s)	298, 417
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	2 cut(s)	60, 215
BsiEI	CGRYCG	2 cut(s)	298, 417
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	6 cut(s)	91, 92, 184, 201, 380, 534
BsmAI	GTCTC	4 cut(s)	28, 58, 85, 101
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	2 cut(s)	28, 101
BsoBI	CYCGRG	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	135, 265, 295, 414
BspACI	CCGC	4 cut(s)	124, 245, 421, 586
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	6 cut(s)	62, 217, 354, 362, 379, 465
BspMAI	CTGCAG	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	553
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	2 cut(s)	60, 215
BspTNI	GGTCTC	2 cut(s)	28, 101
BsrBI	CCGCTC	2 cut(s)	247, 421
BsrFI	RCCGGY	2 cut(s)	44, 349
BssAI	RCCGGY	2 cut(s)	44, 349
BssECI	CCNNGG	3 cut(s)	356, 364, 374
BssMI	GATC	4 cut(s)	135, 265, 295, 414
BssNI	GRCGYC	5 cut(s)	61, 69, 75, 216, 605
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	553, 566
BstACI	GRCGYC	5 cut(s)	61, 69, 75, 216, 605
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	555
BstH2I	RGCGCY	3 cut(s)	64, 219, 231
BstHHI	GCGC	3 cut(s)	63, 218, 230
BstKTI	GATC	4 cut(s)	138, 268, 298, 417
BstMAI	GTCTC	4 cut(s)	28, 58, 85, 101
BstMBI	GATC	4 cut(s)	135, 265, 295, 414
BstMCI	CGRYCG	2 cut(s)	298, 417
BstNI	CCWGG	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	93
BstSCI	CCNGG	5 cut(s)	56, 183, 363, 364, 373
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	20, 289, 358, 681
BsuRI	GGCC	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 257
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	3 cut(s)	63, 218, 230
Cfr10I	RCCGGY	2 cut(s)	44, 349
Cfr13I	GGNCC	5 cut(s)	378, 383, 410, 437, 464
Cfr9I	CCCGGG	1 cut(s)	364
CpoI	CGGWCCG	2 cut(s)	410, 437
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	657
CspI	CGGWCCG	2 cut(s)	410, 437
CviAII	CATG	2 cut(s)	430, 674
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	2 cut(s)	62, 217
DpnI	GATC	4 cut(s)	137, 267, 297, 416
DpnII	GATC	4 cut(s)	135, 265, 295, 414
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	553, 566
EarI	CTCTTC	2 cut(s)	553, 566
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	28, 101
Eco47I	GGWCC	5 cut(s)	378, 383, 410, 437, 464
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	320
EgeI	GGCGCC	2 cut(s)	62, 217
EheI	GGCGCC	2 cut(s)	62, 217
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	433, 677
FaiI	YATR	4 cut(s)	264, 431, 578, 675
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	2 cut(s)	429, 673
FauI	CCCGC	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	7 cut(s)	34, 124, 245, 303, 347, 587, 670
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	7 cut(s)	34, 124, 245, 303, 347, 587, 670
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	3 cut(s)	62, 217, 229
GluI	GCNGC	7 cut(s)	34, 124, 245, 303, 347, 587, 670
GsuI	CTGGAG	1 cut(s)	40
HaeII	RGCGCY	3 cut(s)	64, 219, 231
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	613
HhaI	GCGC	3 cut(s)	63, 218, 230
Hin1I	GRCGYC	5 cut(s)	61, 69, 75, 216, 605
Hin1II	CATG	2 cut(s)	433, 677
Hin6I	GCGC	3 cut(s)	61, 216, 228
HinP1I	GCGC	3 cut(s)	61, 216, 228
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	337, 580, 620, 646
Hpy166II	GTNNAC	2 cut(s)	73, 240
Hpy188I	TCNGA	8 cut(s)	169, 360, 414, 441, 468, 484, 625, 651
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	73, 240
Hpy99I	CGWCG	5 cut(s)	71, 74, 77, 80, 92
HpyAV	CCTTC	2 cut(s)	118, 528
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	4 cut(s)	69, 75, 197, 236
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	4 cut(s)	69, 75, 197, 236
Hsp92I	GRCGYC	5 cut(s)	61, 69, 75, 216, 605
Hsp92II	CATG	2 cut(s)	433, 677
HspAI	GCGC	3 cut(s)	61, 216, 228
KasI	GGCGCC	2 cut(s)	60, 215
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	135, 265, 295, 414
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	4 cut(s)	20, 289, 358, 681
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	4 cut(s)	69, 75, 197, 236
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	4 cut(s)	137, 267, 297, 416
MbiI	CCGCTC	2 cut(s)	247, 421
MboI	GATC	4 cut(s)	135, 265, 295, 414
MboII	GAAGA	3 cut(s)	499, 570, 583
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	538
Mly113I	GGCGCC	2 cut(s)	61, 216
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	603
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	44
MspR9I	CCNGG	5 cut(s)	58, 185, 365, 366, 375
MvaI	CCWGG	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	46
NarI	GGCGCC	2 cut(s)	61, 216
NciI	CCSGG	4 cut(s)	185, 365, 366, 375
NdeII	GATC	4 cut(s)	135, 265, 295, 414
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	433, 677
NlaIV	GGNNCC	6 cut(s)	62, 217, 354, 362, 379, 465
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 75, 84, 332
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	337, 580, 646
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	7 cut(s)	35, 125, 246, 304, 348, 588, 671
Ple19I	CGATCG	2 cut(s)	298, 417
PleI	GAGTC	1 cut(s)	628
PluTI	GGCGCC	2 cut(s)	64, 219
PpsI	GAGTC	1 cut(s)	628
PshAI	GACNNNNGTC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	6 cut(s)	62, 217, 354, 362, 379, 465
PspPI	GGNCC	5 cut(s)	378, 383, 410, 437, 464
PstI	CTGCAG	1 cut(s)	348
PsyI	GACNNNGTC	1 cut(s)	77
PvuI	CGATCG	2 cut(s)	298, 417
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
Rsr2I	CGGWCCG	2 cut(s)	410, 437
RsrII	CGGWCCG	2 cut(s)	410, 437
SacI	GAGCTC	1 cut(s)	320
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	553
SatI	GCNGC	7 cut(s)	34, 124, 245, 303, 347, 587, 670
Sau3AI	GATC	4 cut(s)	135, 265, 295, 414
Sau96I	GGNCC	5 cut(s)	378, 383, 410, 437, 464
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	5 cut(s)	58, 185, 365, 366, 375
SduI	GDGCHC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	344
SfoI	GGCGCC	2 cut(s)	62, 217
SfuI	TTCGAA	1 cut(s)	569
SgrAI	CRCCGGYG	1 cut(s)	44
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	5 cut(s)	378, 383, 410, 437, 464
SmaI	CCCGGG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	515, 664
SmoI	CTYRAG	2 cut(s)	515, 664
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	4 cut(s)	124, 245, 421, 586
SspDI	GGCGCC	2 cut(s)	60, 215
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	5 cut(s)	56, 183, 363, 364, 373
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	4 cut(s)	72, 78, 200, 239
TaqI	TCGA	5 cut(s)	72, 294, 335, 417, 569
TasI	AATT	1 cut(s)	538
TatI	WGTACW	1 cut(s)	656
TauI	GCSGC	3 cut(s)	126, 247, 589
TfiI	GAWTC	3 cut(s)	337, 580, 646
TscAI	CASTG	2 cut(s)	35, 264
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	4 cut(s)	33, 302, 346, 669
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	2 cut(s)	418, 593
TspGWI	ACGGA	2 cut(s)	211, 632
TspMI	CCCGGG	1 cut(s)	364
TspRI	CASTG	2 cut(s)	35, 264
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	5 cut(s)	378, 383, 410, 437, 464
XapI	RAATTY	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	306
ZraI	GACGTC	2 cut(s)	70, 76
ZrmI	AGTACT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.