Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023740.1

Orthogroup ID

OG0004926

Physical Location & Seq

Genomic Coordinates Reverse (-)

4417 .. 4731

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023740.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgaatcggcgacacaagtcggctgtgacgccgaaagaaatggagtcagagaaaatcggcgaggagttgaatccgagtagtactaacttgagcagccatgcgagtttgagtggaaatgagaatgggattggggatttctcaatggaaagtcagaatcttcagtgggctcaagggaaggctggtgaggatcgagttcattttgtggtttctgatgagcatggttgggtgtttgtggggatttatgatgggtttaatggccctgatgctcctaattatttgttgtcgaatctttactctgctgtgcatgaggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

4.84

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02400
fragaria_vesca	FvH4_6g13730
malus_domestica	MD04G1128600.v1.1 MD12G1141300.v1.1
prunus_persica	Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1
pyrus_communis	pycom04g11690
rosa_chinensis	RchiOBHm_Chr3g0466621 RchiOBHm_Chr3g0466691 RchiOBHm_Chr3g0466701
rosa_laevigata	RLG00000024560
rosa_multiflora	Rmu_co8411995.1_g000001 Rmu_sc0001726.1_g000001 Rmu_sc0008845.1_g000002 Rmu_sc0008845.1_g000005 Rmu_sc0023740.1_g000001 Rmu_sc0037733.1_g000001 Rmu_sc0039423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403980 Rroxscaffold_6G00414300 Rroxscaffold_6G00414310
rosa_rugosa	Rorug03G0083100
rosa_samantha	Rh3AG130000 Rh3AG130300 Rh3AG130400 Rh3BG151400 Rh3CG151200 Rh3DG152100
rosa_wichuraiana	Rw3G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	70
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	257
BmsI	GCATC	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	16
BpuEI	CTTGAG	2 cut(s)	109, 153
BsaHI	GRCGYC	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	195
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstPAI	GACNNNNGTC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	3 cut(s)	98, 218, 305
CviJI	RGCY	5 cut(s)	23, 96, 167, 179, 258
CviKI_1	RGCY	5 cut(s)	23, 96, 167, 179, 258
CviQI	GTAC	1 cut(s)	81
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	3 cut(s)	101, 221, 308
FaiI	YATR	4 cut(s)	99, 219, 243, 306
FatI	CATG	3 cut(s)	97, 217, 304
Fnu4HI	GCNGC	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	258
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	101, 221, 308
HinfI	GANTC	5 cut(s)	4, 44, 70, 154, 286
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	49, 75, 153, 211
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	101, 221, 308
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	2 cut(s)	165, 273
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	3 cut(s)	55, 178, 301
MseI	TTAA	1 cut(s)	252
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	3 cut(s)	101, 221, 308
NmuCI	GTSAC	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	4, 70, 154, 286
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	88, 168
SmoI	CTYRAG	2 cut(s)	88, 168
Sse9I	AATT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	190, 284
TasI	AATT	1 cut(s)	271
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	4 cut(s)	4, 70, 154, 286
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	17, 185
TspRI	CASTG	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.