Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004926

Physical Location & Seq

Genomic Coordinates Reverse (-)

36631097 .. 36631639

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGCAACGCCATCGCAAAGGTCTCTCACTGCTGCTCTGTCGCCGGCGAAGTCTCCAGGCGCCACGACATCGACGTCCTCTCCCCCGACGAGGGTCTCGGCCACTCCTTCTGGTACATTCGCCGCCCAGAAATAATCTCCCCCACGACCTCGTTTGAAGCTTCCTCTGAGGAGTTCCCCAACCCGGCTACCACCACGTTCCGGTCAATCTCCGGCGCCTCCGTCAGCGCCAACACGTTCACGCCGCTGTCTACTACCCTATATGATCTCTACCCCGAAAGCTGCGGTGTTCTCGATCGTGCTGCTAGGTTTGAGAGCTCTACTTCGTTCGCTTCGATTCCTCTGCAGCCGGTTCCTCGGAACCCGGGACTTCCGGGGTCCGGTCCTGCTGAAAGAGGCTTCTTGTCCGGTCCCATCGAGCGGGGTTCATGTCCGGTCCGATTGACCGGTTGGTGTGTTCGGGTCCGATTGAGAAGCAATCCGAGAAGATGGAGAGAAGCCTCTCTTTTGGGCTTGAGCAAAAGCCCAAGAAAAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

180

Amino Acids

19.52

Weight (kDa)

9.22

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02400
fragaria_vesca	FvH4_6g13730
malus_domestica	MD04G1128600.v1.1 MD12G1141300.v1.1
prunus_persica	Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1
pyrus_communis	pycom04g11690
rosa_chinensis	RchiOBHm_Chr3g0466621 RchiOBHm_Chr3g0466691 RchiOBHm_Chr3g0466701
rosa_laevigata	RLG00000024560
rosa_multiflora	Rmu_co8411995.1_g000001 Rmu_sc0001726.1_g000001 Rmu_sc0008845.1_g000002 Rmu_sc0008845.1_g000005 Rmu_sc0023740.1_g000001 Rmu_sc0037733.1_g000001 Rmu_sc0039423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403980 Rroxscaffold_6G00414300 Rroxscaffold_6G00414310
rosa_rugosa	Rorug03G0083100
rosa_samantha	Rh3AG130000 Rh3AG130300 Rh3AG130400 Rh3BG151400 Rh3CG151200 Rh3DG152100
rosa_wichuraiana	Rw3G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	60, 215
AccBSI	CCGCTC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	4 cut(s)	124, 245, 285, 421
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	537
AcyI	GRCGYC	3 cut(s)	61, 75, 216
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	7 cut(s)	91, 92, 184, 201, 380, 420, 533
AflIII	ACRYGT	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	3 cut(s)	161, 282, 318
AluI	AGCT	3 cut(s)	161, 282, 318
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	3 cut(s)	28, 58, 101
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	33, 282, 302, 346
ApoI	RAATTY	1 cut(s)	537
AsiGI	ACCGGT	1 cut(s)	446
AspLEI	GCGC	3 cut(s)	63, 218, 230
AspS9I	GGNCC	5 cut(s)	378, 383, 410, 436, 463
AsuC2I	CCSGG	4 cut(s)	185, 365, 366, 375
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	5 cut(s)	378, 383, 410, 436, 463
BanI	GGYRCC	2 cut(s)	60, 215
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	4 cut(s)	20, 269, 289, 358
BccI	CCATC	3 cut(s)	20, 422, 483
BcgI	CGANNNNNNTGC	5 cut(s)	29, 284, 318, 325, 359
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	4 cut(s)	185, 365, 366, 375
BcoDI	GTCTC	3 cut(s)	28, 58, 101
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	3 cut(s)	64, 219, 231
BisI	GCNGC	6 cut(s)	34, 124, 245, 283, 303, 347
BlsI	GCNGC	6 cut(s)	35, 125, 246, 284, 304, 348
Bme1390I	CCNGG	5 cut(s)	58, 185, 365, 366, 375
Bme18I	GGWCC	5 cut(s)	378, 383, 410, 436, 463
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	5 cut(s)	378, 383, 410, 436, 463
BmiI	GGNNCC	7 cut(s)	62, 217, 354, 362, 379, 412, 464
BmrFI	CCNGG	5 cut(s)	58, 185, 365, 366, 375
BoxI	GACNNNNGTC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	535
BpuMI	CCSGG	4 cut(s)	185, 365, 366, 375
BsaHI	GRCGYC	3 cut(s)	61, 75, 216
BsaI	GGTCTC	2 cut(s)	28, 101
BsaJI	CCNNGG	3 cut(s)	356, 364, 374
BsaWI	WCCGGW	5 cut(s)	201, 380, 407, 433, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	7 cut(s)	91, 92, 184, 201, 380, 420, 533
Bse118I	RCCGGY	3 cut(s)	44, 349, 446
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	356, 364, 374
BseLI	CCNNNNNNNGG	7 cut(s)	91, 92, 184, 201, 380, 420, 533
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	20, 269, 289, 358
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	2 cut(s)	60, 215
BshTI	ACCGGT	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	381, 396
BslI	CCNNNNNNNGG	7 cut(s)	91, 92, 184, 201, 380, 420, 533
BsmAI	GTCTC	3 cut(s)	28, 58, 101
BsmFI	GGGAC	2 cut(s)	381, 396
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	2 cut(s)	28, 101
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	265, 295
BspACI	CCGC	4 cut(s)	124, 245, 285, 421
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	7 cut(s)	62, 217, 354, 362, 379, 412, 464
BspMAI	CTGCAG	1 cut(s)	348
BspT107I	GGYRCC	2 cut(s)	60, 215
BspTNI	GGTCTC	2 cut(s)	28, 101
BsrBI	CCGCTC	1 cut(s)	421
BsrFI	RCCGGY	3 cut(s)	44, 349, 446
BssAI	RCCGGY	3 cut(s)	44, 349, 446
BssECI	CCNNGG	3 cut(s)	356, 364, 374
BssMI	GATC	2 cut(s)	265, 295
BssNI	GRCGYC	3 cut(s)	61, 75, 216
Bst2UI	CCWGG	1 cut(s)	58
BstACI	GRCGYC	3 cut(s)	61, 75, 216
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	168
BstH2I	RGCGCY	3 cut(s)	64, 219, 231
BstHHI	GCGC	3 cut(s)	63, 218, 230
BstKTI	GATC	2 cut(s)	268, 298
BstMAI	GTCTC	3 cut(s)	28, 58, 101
BstMBI	GATC	2 cut(s)	265, 295
BstMCI	CGRYCG	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	93
BstSCI	CCNGG	5 cut(s)	56, 183, 363, 364, 373
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	20, 269, 289, 358
BsuRI	GGCC	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	3 cut(s)	63, 218, 230
Cfr10I	RCCGGY	3 cut(s)	44, 349, 446
Cfr13I	GGNCC	5 cut(s)	378, 383, 410, 436, 463
Cfr9I	CCCGGG	1 cut(s)	364
CpoI	CGGWCCG	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	115
CspAI	ACCGGT	1 cut(s)	446
CspI	CGGWCCG	1 cut(s)	436
CviAII	CATG	1 cut(s)	429
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	2 cut(s)	62, 217
DpnI	GATC	2 cut(s)	267, 297
DpnII	GATC	2 cut(s)	265, 295
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	28, 101
Eco47I	GGWCC	5 cut(s)	378, 383, 410, 436, 463
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	320
EgeI	GGCGCC	2 cut(s)	62, 217
EheI	GGCGCC	2 cut(s)	62, 217
FaeI	CATG	1 cut(s)	432
FaiI	YATR	3 cut(s)	262, 264, 430
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	381, 396
FatI	CATG	1 cut(s)	428
FauI	CCCGC	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	6 cut(s)	34, 124, 245, 283, 303, 347
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	6 cut(s)	34, 124, 245, 283, 303, 347
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	3 cut(s)	62, 217, 229
GluI	GCNGC	6 cut(s)	34, 124, 245, 283, 303, 347
GsuI	CTGGAG	1 cut(s)	40
HaeII	RGCGCY	3 cut(s)	64, 219, 231
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	3 cut(s)	63, 218, 230
Hin1I	GRCGYC	3 cut(s)	61, 75, 216
Hin1II	CATG	1 cut(s)	432
Hin6I	GCGC	3 cut(s)	61, 216, 228
HinP1I	GCGC	3 cut(s)	61, 216, 228
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	240, 252
Hpy188I	TCNGA	5 cut(s)	169, 360, 440, 467, 483
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	240, 252
Hpy99I	CGWCG	2 cut(s)	77, 92
HpyAV	CCTTC	1 cut(s)	118
HpyCH4IV	ACGT	3 cut(s)	75, 197, 236
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	3 cut(s)	75, 197, 236
Hsp92I	GRCGYC	3 cut(s)	61, 75, 216
Hsp92II	CATG	1 cut(s)	432
HspAI	GCGC	3 cut(s)	61, 216, 228
KasI	GGCGCC	2 cut(s)	60, 215
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	265, 295
Lsp1109I	GCAGC	4 cut(s)	20, 269, 289, 358
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	3 cut(s)	75, 197, 236
MalI	GATC	2 cut(s)	267, 297
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	2 cut(s)	265, 295
MboII	GAAGA	1 cut(s)	498
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	537
Mly113I	GGCGCC	2 cut(s)	61, 216
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	5 cut(s)	58, 185, 365, 366, 375
MvaI	CCWGG	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	46
NarI	GGCGCC	2 cut(s)	61, 216
NciI	CCSGG	4 cut(s)	185, 365, 366, 375
NdeII	GATC	2 cut(s)	265, 295
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	7 cut(s)	62, 217, 354, 362, 379, 412, 464
NmeAIII	GCCGAG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 332
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	6 cut(s)	35, 125, 246, 284, 304, 348
Ple19I	CGATCG	1 cut(s)	298
PluTI	GGCGCC	2 cut(s)	64, 219
PshAI	GACNNNNGTC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	7 cut(s)	62, 217, 354, 362, 379, 412, 464
PspPI	GGNCC	5 cut(s)	378, 383, 410, 436, 463
PstI	CTGCAG	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
Rsr2I	CGGWCCG	1 cut(s)	436
RsrII	CGGWCCG	1 cut(s)	436
SacI	GAGCTC	1 cut(s)	320
SatI	GCNGC	6 cut(s)	34, 124, 245, 283, 303, 347
Sau3AI	GATC	2 cut(s)	265, 295
Sau96I	GGNCC	5 cut(s)	378, 383, 410, 436, 463
ScrFI	CCNGG	5 cut(s)	58, 185, 365, 366, 375
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	9 cut(s)	24, 78, 152, 163, 200, 239, 284, 311, 320
SfcI	CTRYAG	1 cut(s)	344
SfoI	GGCGCC	2 cut(s)	62, 217
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	5 cut(s)	378, 383, 410, 436, 463
SmaI	CCCGGG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	1 cut(s)	537
SsiI	CCGC	4 cut(s)	124, 245, 285, 421
SspDI	GGCGCC	2 cut(s)	60, 215
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	5 cut(s)	56, 183, 363, 364, 373
TaiI	ACGT	3 cut(s)	78, 200, 239
TaqI	TCGA	4 cut(s)	72, 294, 335, 417
TasI	AATT	1 cut(s)	537
TauI	GCSGC	2 cut(s)	126, 247
TfiI	GAWTC	1 cut(s)	337
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	4 cut(s)	33, 282, 302, 346
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	211
TspMI	CCCGGG	1 cut(s)	364
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	5 cut(s)	378, 383, 410, 436, 463
XapI	RAATTY	1 cut(s)	537
XmaI	CCCGGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	306
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.