Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004926

Physical Location & Seq

Genomic Coordinates Forward (+)

13091065 .. 13092249

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTTCCCTTCTTGTGTCAGCTTTTATTAAGGAAATTAGGAGTTGGCTTCTAAATTTGGTTTTCCAATTTGAAATTTGGGAATTGAGTTTACATGTGCAATCTGAAATTAAGGGTATGGGTTTACCTACTCCAATTGAGCTTAAGGGGTCCTTGAGTGAACTGACCTTCCTCTTCGTCCTCTATATATATATGGGTTCTCTGTTCCTACTCGGGATCTACACAGCTACAAACCCCTCGGATGTTCTCAAGGCTCTTTCGGAGGCATTAGGAAAAACTGAGGAGGCCTATTTGGATGTTGCGAATAAGGTGGTCACCGAAAATCCTAAGTTGGCTCTGATGGGGTCTTGTGTGCTGGTGATGTTGATGAAGGGAGATGATGTTTACTTGATGAATATTGGGGATAGTAGTGCGGTTTTAGCTCAGAAAGTAGATCCCAAGATCAAGCAAAACTTTGAATGGATTAATAAGGAAACTTTATGCAAGCGTCGATCATCTAGTGCTGATGAGCTTTACAGTTTAAACAATTTGACTTCGGTGCTGACAATCGATCACAGCACAAATGTGAAAGAGGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

193

Amino Acids

21.55

Weight (kDa)

5.1

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02400
fragaria_vesca	FvH4_6g13730
malus_domestica	MD04G1128600.v1.1 MD12G1141300.v1.1
prunus_persica	Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1
pyrus_communis	pycom04g11690
rosa_chinensis	RchiOBHm_Chr3g0466621 RchiOBHm_Chr3g0466691 RchiOBHm_Chr3g0466701
rosa_laevigata	RLG00000024560
rosa_multiflora	Rmu_co8411995.1_g000001 Rmu_sc0001726.1_g000001 Rmu_sc0008845.1_g000002 Rmu_sc0008845.1_g000005 Rmu_sc0023740.1_g000001 Rmu_sc0037733.1_g000001 Rmu_sc0039423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403980 Rroxscaffold_6G00414300 Rroxscaffold_6G00414310
rosa_rugosa	Rorug03G0083100
rosa_samantha	Rh3AG130000 Rh3AG130300 Rh3AG130400 Rh3BG151400 Rh3CG151200 Rh3DG152100
rosa_wichuraiana	Rw3G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	2 cut(s)	224, 428
AcsI	RAATTY	2 cut(s)	55, 75
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	74, 458
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	5 cut(s)	23, 142, 227, 422, 511
AluI	AGCT	5 cut(s)	23, 142, 227, 422, 511
AlwI	GGATC	2 cut(s)	224, 428
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	55, 75
AseI	ATTAAT	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	307, 370
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	150
BccI	CCATC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	498
BfrI	CTTAAG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	7, 151
BpuEI	CTTGAG	2 cut(s)	175, 233
Bsa29I	ATCGAT	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	247, 301
BseMII	CTCAG	2 cut(s)	270, 437
BseRI	GAGGAG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	212
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	216, 433, 441, 491, 550
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	271, 436
BspDI	ATCGAT	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	7, 151
BspPI	GGATC	2 cut(s)	224, 428
BspTI	CTTAAG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	5 cut(s)	216, 433, 441, 491, 550
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	279, 327, 423
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	247, 301
BstKTI	GATC	5 cut(s)	219, 436, 444, 494, 553
BstMBI	GATC	5 cut(s)	216, 433, 441, 491, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	216, 433
BstYI	RGATCY	2 cut(s)	216, 433
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	247, 301
Cac8I	GCNNGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	150
ClaI	ATCGAT	1 cut(s)	549
CseI	GACGC	1 cut(s)	476
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	9 cut(s)	23, 49, 142, 227, 254, 287, 335, 422, 511
CviKI_1	RGCY	9 cut(s)	23, 49, 142, 227, 254, 287, 335, 422, 511
DdeI	CTNAG	3 cut(s)	279, 327, 423
DpnI	GATC	5 cut(s)	218, 435, 443, 493, 552
DpnII	GATC	5 cut(s)	216, 433, 441, 491, 550
DraI	TTTAAA	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	150
EcoO65I	GGTNACC	1 cut(s)	313
FaeI	CATG	1 cut(s)	98
FaiI	YATR	8 cut(s)	96, 119, 186, 188, 190, 192, 194, 481
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 437, 469
FatI	CATG	1 cut(s)	94
FokI	GGATG	2 cut(s)	254, 308
FspBI	CTAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	287
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	307, 370
Hpy166II	GTNNAC	4 cut(s)	92, 125, 161, 385
Hpy188I	TCNGA	5 cut(s)	106, 241, 262, 339, 426
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	4 cut(s)	92, 125, 161, 385
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	3 cut(s)	20, 178, 364
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	2 cut(s)	100, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	3 cut(s)	279, 327, 423
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	5 cut(s)	216, 433, 441, 491, 550
LpnPI	CCDG	1 cut(s)	341
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	5 cut(s)	218, 435, 443, 493, 552
MboI	GATC	5 cut(s)	216, 433, 441, 491, 550
MboII	GAAGA	1 cut(s)	166
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	216, 433
MluCI	AATT	8 cut(s)	36, 55, 68, 75, 83, 108, 135, 526
MnlI	CCTC	7 cut(s)	182, 191, 247, 256, 274, 277, 565
MseI	TTAA	5 cut(s)	30, 111, 144, 465, 521
MslI	CAYNNNNRTG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	143
MssI	GTTTAAAC	1 cut(s)	522
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	5 cut(s)	216, 433, 441, 491, 550
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	7, 151
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	287
PciI	ACATGT	1 cut(s)	94
PmeI	GTTTAAAC	1 cut(s)	522
PpuMI	RGGWCCY	1 cut(s)	150
PscI	ACATGT	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	7, 151
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	216, 433
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	5 cut(s)	30, 111, 144, 465, 521
Sau3AI	GATC	5 cut(s)	216, 433, 441, 491, 550
Sau96I	GGNCC	1 cut(s)	150
SetI	ASST	9 cut(s)	25, 130, 144, 170, 229, 312, 424, 513, 576
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	3 cut(s)	143, 154, 248
SmoI	CTYRAG	3 cut(s)	143, 154, 248
Sse9I	AATT	8 cut(s)	36, 55, 68, 75, 83, 108, 135, 526
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	413
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	2 cut(s)	490, 549
TasI	AATT	8 cut(s)	36, 55, 68, 75, 83, 108, 135, 526
Tru1I	TTAA	5 cut(s)	30, 111, 144, 465, 521
Tru9I	TTAA	5 cut(s)	30, 111, 144, 465, 521
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	383, 407
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	55, 75
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.