Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037733.1

Orthogroup ID

OG0004926

Physical Location & Seq

Genomic Coordinates Reverse (-)

2110 .. 4031

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037733.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atggaaagtcagaatcttcagtgggctcaagggaaggcgggggaggatcgagttcatgttgtggtttctgatgagcatggttgggtgtttgtcgggatttatgatgggtttaatggccctgatgctcctgattatttgttgtcgaatctttactctgctgtgcatgaggagctcaagggattgctgtggagtgacatgttggaaatcgaatccacggaattgaaatcatcggattcgaatgtggtttcgtgttcttttagtgaggttggctgcattgatggagttgataaggagaattgtacagtggagaatgtgttgtcgaatagaaaacagagcaggcatttgaggaatgaaagtaatgagatggataataagtgggaggagagtcagaggagatggaagtgtgaatgggatagagaaaggccagagcttgataggaaaactaaggagaacttgaagcttaaggtgtcaaatggtgtggcagctgcgaacccctcggatgttctcaaggctctttcggaggcattaagaaaaactgaagaggcctatttggatgttgcggataagatggttaccgaaaatcctgagctggctctgatggggtcttgtgtgctggtgatgttgatgaagggagatgatgtttacttgatgaatgttggggatagtcgtgcggttttggctcagaaagccgatcccaagatcaagcgaaacttggaacggattaatgaggaagctttatgcgaacgtcgatcatctagtgctgatgagctttacagtttaaacaatttgactgcggttcagctgacaatggatcacagtacaagtatgaaagaggaagttcgaagaataaggaatgaacatccagatgatgctactgcagtgatgaataagagagtgaagggttatttgaaggtcactcgggcatttggtgccggctttctaaaacagccaaaatggaatgatgcactgctagagatgtttagactcaattatgttgggactgccccctacattacatgtataccatcactgtatcaccacaaactcagaccaagagacagactcttaatattgtcttctgatggactctatcagtacttcaccaatgaagaagccgtctccgaagtagagttgttcatctcttcctttcctgatggtgaccctgcacaacatctgattgaagaagtgttgtttagagcagcaaagaaagctggactggccttccatgaactgcttgacatcccacaaggcgaacgtcgtcggtaccatgatgacatttccattcttattatttcacttgagggaagaatatggcgttcatcgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

442

Amino Acids

50.37

Weight (kDa)

5.3

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02400
fragaria_vesca	FvH4_6g13730
malus_domestica	MD04G1128600.v1.1 MD12G1141300.v1.1
prunus_persica	Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1
pyrus_communis	pycom04g11690
rosa_chinensis	RchiOBHm_Chr3g0466621 RchiOBHm_Chr3g0466691 RchiOBHm_Chr3g0466701
rosa_laevigata	RLG00000024560
rosa_multiflora	Rmu_co8411995.1_g000001 Rmu_sc0001726.1_g000001 Rmu_sc0008845.1_g000002 Rmu_sc0008845.1_g000005 Rmu_sc0023740.1_g000001 Rmu_sc0037733.1_g000001 Rmu_sc0039423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403980 Rroxscaffold_6G00414300 Rroxscaffold_6G00414310
rosa_rugosa	Rorug03G0083100
rosa_samantha	Rh3AG130000 Rh3AG130300 Rh3AG130400 Rh3BG151400 Rh3CG151200 Rh3DG152100
rosa_wichuraiana	Rw3G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1263
AccB1I	GGYRCC	2 cut(s)	929, 1263
AccI	GTMKAC	1 cut(s)	1021
AciI	CCGC	4 cut(s)	38, 560, 671, 794
AclWI	GGATC	3 cut(s)	54, 686, 819
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	4 cut(s)	301, 820, 1097, 1265
AflII	CTTAAG	1 cut(s)	461
AflIII	ACRYGT	2 cut(s)	195, 1016
AgsI	TTSAA	4 cut(s)	223, 457, 910, 1181
AluBI	AGCT	9 cut(s)	172, 430, 460, 485, 589, 734, 769, 802, 1211
AluI	AGCT	9 cut(s)	172, 430, 460, 485, 589, 734, 769, 802, 1211
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	1050, 1123
AlwI	GGATC	3 cut(s)	54, 686, 819
Ama87I	CYCGRG	1 cut(s)	918
AoxI	GGCC	4 cut(s)	115, 422, 543, 1218
ApeKI	GCWGC	4 cut(s)	270, 482, 485, 1199
AseI	ATTAAT	1 cut(s)	723
Asp718I	GGTACC	1 cut(s)	1263
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	4 cut(s)	628, 1028, 1093, 1169
AsuII	TTCGAA	2 cut(s)	236, 841
AvaI	CYCGRG	1 cut(s)	918
BanI	GGYRCC	2 cut(s)	929, 1263
BanII	GRGCYC	2 cut(s)	28, 174
BbsI	GAAGAC	1 cut(s)	1068
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	257, 472, 494, 1211
BccI	CCATC	9 cut(s)	98, 272, 358, 390, 562, 592, 1033, 1076, 1148
BceAI	ACGGC	1 cut(s)	1100
BcoDI	GTCTC	2 cut(s)	1050, 1123
BfaI	CTAG	2 cut(s)	756, 971
BfmI	CTRYAG	1 cut(s)	876
BfrI	CTTAAG	1 cut(s)	461
BisI	GCNGC	4 cut(s)	271, 483, 486, 1200
BlsI	GCNGC	4 cut(s)	272, 484, 487, 1201
BmcAI	AGTACT	1 cut(s)	1097
BmeT110I	CYCGRG	1 cut(s)	918
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	931, 1265
BmsI	GCATC	3 cut(s)	112, 859, 952
BpiI	GAAGAC	1 cut(s)	1068
BplI	GAGNNNNNCTC	2 cut(s)	1047, 1079
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	2 cut(s)	236, 841
BpuEI	CTTGAG	4 cut(s)	12, 158, 491, 1319
BsaJI	CCNNGG	2 cut(s)	213, 495
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 624, 654
Bse118I	RCCGGY	1 cut(s)	932
Bse1I	ACTGG	1 cut(s)	1221
BseDI	CCNNGG	2 cut(s)	213, 495
BseGI	GGATG	4 cut(s)	505, 559, 859, 1239
BseMII	CTCAG	3 cut(s)	576, 695, 1060
BseNI	ACTGG	1 cut(s)	1221
BseRI	GAGGAG	3 cut(s)	182, 395, 406
BseXI	GCAGC	4 cut(s)	257, 472, 494, 1211
BsgI	GTGCAG	1 cut(s)	1149
BshFI	GGCC	4 cut(s)	117, 424, 545, 1220
BshNI	GGYRCC	2 cut(s)	929, 1263
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	933
BslFI	GGGAC	1 cut(s)	1012
BsmAI	GTCTC	2 cut(s)	1050, 1123
BsmBI	CGTCTC	1 cut(s)	1123
BsmFI	GGGAC	1 cut(s)	1012
BsnI	GGCC	4 cut(s)	117, 424, 545, 1220
BsoBI	CYCGRG	1 cut(s)	918
Bsp119I	TTCGAA	2 cut(s)	236, 841
Bsp1286I	GDGCHC	2 cut(s)	28, 174
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	5 cut(s)	46, 691, 699, 749, 811
BspACI	CCGC	4 cut(s)	38, 560, 671, 794
BspANI	GGCC	4 cut(s)	117, 424, 545, 1220
BspCNI	CTCAG	3 cut(s)	577, 694, 1059
BspLI	GGNNCC	2 cut(s)	931, 1265
BspMAI	CTGCAG	1 cut(s)	880
BspPI	GGATC	3 cut(s)	54, 686, 819
BspT104I	TTCGAA	2 cut(s)	236, 841
BspT107I	GGYRCC	2 cut(s)	929, 1263
BspTI	CTTAAG	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	932
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	1221
BssAI	RCCGGY	1 cut(s)	932
BssECI	CCNNGG	2 cut(s)	213, 495
BssMI	GATC	5 cut(s)	46, 691, 699, 749, 811
BssNAI	GTATAC	1 cut(s)	1022
Bst1107I	GTATAC	1 cut(s)	1022
Bst4CI	ACNGT	4 cut(s)	304, 776, 818, 1032
Bst6I	CTCTTC	2 cut(s)	534, 1147
BstAFI	CTTAAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	299
BstBI	TTCGAA	2 cut(s)	236, 841
BstC8I	GCNNGC	3 cut(s)	338, 591, 934
BstDEI	CTNAG	4 cut(s)	444, 585, 681, 1046
BstDSI	CCRYGG	1 cut(s)	213
BstEII	GGTNACC	2 cut(s)	571, 1157
BstF5I	GGATG	4 cut(s)	505, 559, 859, 1239
BstKTI	GATC	5 cut(s)	49, 694, 702, 752, 814
BstMAI	GTCTC	2 cut(s)	1050, 1123
BstMBI	GATC	5 cut(s)	46, 691, 699, 749, 811
BstMWI	GCNNNNNNNGC	7 cut(s)	169, 677, 686, 929, 1208, 1217, 1321
BstNSI	RCATGY	2 cut(s)	199, 1020
BstPI	GGTNACC	2 cut(s)	571, 1157
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	4 cut(s)	257, 472, 494, 1211
BstV2I	GAAGAC	1 cut(s)	1068
BstZ17I	GTATAC	1 cut(s)	1022
BsuRI	GGCC	4 cut(s)	117, 424, 545, 1220
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	1305
BtsCI	GGATG	4 cut(s)	505, 559, 859, 1239
BtsI	GCAGTG	2 cut(s)	885, 965
BtsIMutI	CAGTG	5 cut(s)	26, 309, 885, 965, 1028
Cac8I	GCNNGC	3 cut(s)	338, 591, 934
Cfr10I	RCCGGY	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	4 cut(s)	300, 819, 1096, 1264
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	7 cut(s)	56, 77, 164, 196, 1017, 1226, 1268
CviQI	GTAC	4 cut(s)	300, 819, 1096, 1264
DdeI	CTNAG	4 cut(s)	444, 585, 681, 1046
DpnI	GATC	5 cut(s)	48, 693, 701, 751, 813
DpnII	GATC	5 cut(s)	46, 691, 699, 749, 811
DraI	TTTAAA	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	534, 1147
EarI	CTCTTC	2 cut(s)	534, 1147
Ecl136II	GAGCTC	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	545
Eco24I	GRGCYC	2 cut(s)	28, 174
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	918
Eco91I	GGTNACC	2 cut(s)	571, 1157
EcoICRI	GAGCTC	1 cut(s)	172
EcoO65I	GGTNACC	2 cut(s)	571, 1157
EcoT38I	GRGCYC	2 cut(s)	28, 174
Esp3I	CGTCTC	1 cut(s)	1123
FaeI	CATG	7 cut(s)	59, 80, 167, 199, 1020, 1229, 1271
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 695, 727
FaqI	GGGAC	1 cut(s)	1012
FatI	CATG	7 cut(s)	55, 76, 163, 195, 1016, 1225, 1267
FauI	CCCGC	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	1021
Fnu4HI	GCNGC	4 cut(s)	271, 483, 486, 1200
FokI	GGATG	4 cut(s)	512, 566, 846, 1226
FriOI	GRGCYC	2 cut(s)	28, 174
Fsp4HI	GCNGC	4 cut(s)	271, 483, 486, 1200
FspBI	CTAG	2 cut(s)	756, 971
GluI	GCNGC	4 cut(s)	271, 483, 486, 1200
HaeIII	GGCC	4 cut(s)	117, 424, 545, 1220
HapII	CCGG	1 cut(s)	933
Hin1II	CATG	7 cut(s)	59, 80, 167, 199, 1020, 1229, 1271
HindIII	AAGCTT	2 cut(s)	458, 732
HinfI	GANTC	8 cut(s)	13, 145, 209, 233, 385, 984, 1062, 1086
HpaII	CCGG	1 cut(s)	933
HphI	GGTGA	4 cut(s)	628, 1028, 1093, 1169
Hpy166II	GTNNAC	2 cut(s)	643, 1022
Hpy188III	TCNNGA	5 cut(s)	94, 128, 584, 863, 1151
Hpy8I	GTNNAC	2 cut(s)	643, 1022
Hpy99I	CGWCG	3 cut(s)	750, 1260, 1263
HpyAV	CCTTC	5 cut(s)	28, 622, 892, 904, 1231
HpyCH4III	ACNGT	4 cut(s)	304, 776, 818, 1032
HpyCH4IV	ACGT	2 cut(s)	745, 1255
HpyCH4V	TGCA	5 cut(s)	163, 273, 878, 965, 1166
HpyF10VI	GCNNNNNNNGC	7 cut(s)	169, 677, 686, 929, 1208, 1217, 1321
HpyF3I	CTNAG	4 cut(s)	444, 585, 681, 1046
HpySE526I	ACGT	2 cut(s)	745, 1255
Hsp92II	CATG	7 cut(s)	59, 80, 167, 199, 1020, 1229, 1271
KpnI	GGTACC	1 cut(s)	1267
KroI	GCCGGC	1 cut(s)	932
KroNI	GCCGGC	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	46, 691, 699, 749, 811
LmnI	GCTCC	2 cut(s)	130, 169
Lsp1109I	GCAGC	4 cut(s)	257, 472, 494, 1211
LweI	GCATC	3 cut(s)	112, 859, 952
MaeI	CTAG	2 cut(s)	756, 971
MaeII	ACGT	2 cut(s)	745, 1255
MaeIII	GTNAC	4 cut(s)	191, 571, 913, 1157
MalI	GATC	5 cut(s)	48, 693, 701, 751, 813
MboI	GATC	5 cut(s)	46, 691, 699, 749, 811
MboII	GAAGA	8 cut(s)	8, 551, 855, 1068, 1121, 1134, 1193, 1317
MhlI	GDGCHC	2 cut(s)	28, 174
MluCI	AATT	4 cut(s)	218, 295, 784, 988
MlyI	GAGTC	4 cut(s)	394, 978, 1056, 1080
MmeI	TCCRAC	1 cut(s)	180
MroNI	GCCGGC	1 cut(s)	932
MseI	TTAA	6 cut(s)	111, 462, 527, 723, 779, 1067
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	2 cut(s)	485, 802
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	1 cut(s)	933
MssI	GTTTAAAC	1 cut(s)	780
MwoI	GCNNNNNNNGC	7 cut(s)	169, 677, 686, 929, 1208, 1217, 1321
NaeI	GCCGGC	1 cut(s)	934
NdeII	GATC	5 cut(s)	46, 691, 699, 749, 811
NgoMIV	GCCGGC	1 cut(s)	932
NlaIII	CATG	7 cut(s)	59, 80, 167, 199, 1020, 1229, 1271
NlaIV	GGNNCC	2 cut(s)	931, 1265
NmuCI	GTSAC	3 cut(s)	191, 913, 1157
NspI	RCATGY	2 cut(s)	199, 1020
NspV	TTCGAA	2 cut(s)	236, 841
PceI	AGGCCT	1 cut(s)	545
PciI	ACATGT	2 cut(s)	195, 1016
PdiI	GCCGGC	1 cut(s)	934
PfeI	GAWTC	4 cut(s)	13, 145, 209, 233
PkrI	GCNGC	4 cut(s)	272, 484, 487, 1201
PleI	GAGTC	4 cut(s)	393, 978, 1056, 1080
PmeI	GTTTAAAC	1 cut(s)	780
PpsI	GAGTC	4 cut(s)	393, 978, 1056, 1080
PscI	ACATGT	2 cut(s)	195, 1016
PshBI	ATTAAT	1 cut(s)	723
Psp124BI	GAGCTC	1 cut(s)	174
PspEI	GGTNACC	2 cut(s)	571, 1157
PspN4I	GGNNCC	2 cut(s)	931, 1265
PspPI	GGNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	880
PvuII	CAGCTG	2 cut(s)	485, 802
RsaI	GTAC	4 cut(s)	301, 820, 1097, 1265
RsaNI	GTAC	4 cut(s)	300, 819, 1096, 1264
RseI	CAYNNNNRTG	1 cut(s)	864
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	6 cut(s)	111, 462, 527, 723, 779, 1067
SatI	GCNGC	4 cut(s)	271, 483, 486, 1200
Sau3AI	GATC	5 cut(s)	46, 691, 699, 749, 811
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	1097
SchI	GAGTC	4 cut(s)	394, 978, 1056, 1080
SduI	GDGCHC	2 cut(s)	28, 174
SfaNI	GCATC	3 cut(s)	112, 859, 952
SfcI	CTRYAG	1 cut(s)	876
SfuI	TTCGAA	2 cut(s)	236, 841
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	5 cut(s)	27, 173, 461, 506, 1298
SmoI	CTYRAG	5 cut(s)	27, 173, 461, 506, 1298
Sse9I	AATT	4 cut(s)	218, 295, 784, 988
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	4 cut(s)	38, 560, 671, 794
SspI	AATATT	1 cut(s)	1071
SspMI	CTAG	2 cut(s)	756, 971
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	545
TaaI	ACNGT	4 cut(s)	304, 776, 818, 1032
TaiI	ACGT	2 cut(s)	748, 1258
TaqI	TCGA	7 cut(s)	49, 143, 207, 236, 320, 748, 841
TasI	AATT	4 cut(s)	218, 295, 784, 988
TatI	WGTACW	3 cut(s)	299, 818, 1095
TfiI	GAWTC	4 cut(s)	13, 145, 209, 233
Tru1I	TTAA	6 cut(s)	111, 462, 527, 723, 779, 1067
Tru9I	TTAA	6 cut(s)	111, 462, 527, 723, 779, 1067
TscAI	CASTG	5 cut(s)	26, 309, 885, 972, 1035
TseFI	GTSAC	3 cut(s)	191, 913, 1157
TseI	GCWGC	4 cut(s)	270, 482, 485, 1199
Tsp45I	GTSAC	3 cut(s)	191, 913, 1157
TspGWI	ACGGA	2 cut(s)	230, 733
TspRI	CASTG	5 cut(s)	26, 309, 885, 972, 1035
Vha464I	CTTAAG	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	723
XceI	RCATGY	2 cut(s)	199, 1020
XmiI	GTMKAC	1 cut(s)	1021
XspI	CTAG	2 cut(s)	756, 971
ZrmI	AGTACT	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.