Rmu_sc0039423.1_g000001

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039423.1
OG0004926
Physical Location & Seq
Reverse (-)
1 .. 1324
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039423.1_g000001.1.cds

Sequence Viewer

Length: 948 bp
atggaaagtcagaatcttcagtgggctcaagggaaggcgggtgaggatcgagttcatgttgtggtttctgatgagcatggttgggtgttcgtggggatttatgatgggtttaatggccctgatgctcctgattatttgttgtctaatctttactctgctgtgcatgaggagctcaagggattgctgtggagtgacatgttggaaatcgaatccatggatttgaaatcatcggagtcgaatgtggtttcgtgttcttttagtgaggttggctgcattgatggagttgataaggagaattgtacagtggagaatgtgttgtcaaatagaaaacagagcaggcatttgaggaatgaaagtaatgagatggataataagtgggaggagagtcagaggagatggaagtgtgaatgggatagagaaaggccagagcttgataggaaaactaaggagaacttgaagcttaaggtgtcaaatggtgtggcagctgcgaacccctcggatgttctcaaggctctttcggaggcattaagaaaaactgaagaggcctatttggatgttgcggataagatggttacggaaaatcctgagctggctctgatggggtcttgtgtgctggtgatgttgatgaagggagatgatgtttatctgatgaatgttggggatagtcgtgcggttttggctcagaaagccgatcccaagatcaagcgaaacttggaacggattaatgaggaagctttatgcgaacgtcgatcatctagtgctgatgagctttacagtttaaacaatttgacttcggttcagctgacaatggatcacagcacaagtgtgaaagaggaagttcgaagaataaggaatgaacatccagatgatgctactgcagtgatgaataagagagtgaagggttatttgaaggtcactcgggcatttggtgccggctttctaaaacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

316

Amino Acids

35.78

Weight (kDa)

5.17

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 929
AciI CCGC 3 cut(s) 38, 560, 671
AclWI GGATC 3 cut(s) 54, 686, 819
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 1 cut(s) 301
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 223, 457, 910
AleI CACNNNNGTG 1 cut(s) 824
AluBI AGCT 8 cut(s) 172, 430, 460, 485, 589, 734, 769, 802
AluI AGCT 8 cut(s) 172, 430, 460, 485, 589, 734, 769, 802
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 3 cut(s) 54, 686, 819
Ama87I CYCGRG 1 cut(s) 918
AoxI GGCC 3 cut(s) 115, 422, 543
ApeKI GCWGC 3 cut(s) 270, 482, 485
AseI ATTAAT 1 cut(s) 723
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 53, 628
AsuII TTCGAA 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 918
BanI GGYRCC 1 cut(s) 929
BanII GRGCYC 2 cut(s) 28, 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 257, 472, 494
BccI CCATC 6 cut(s) 98, 272, 358, 390, 562, 592
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 876
BfrI CTTAAG 1 cut(s) 461
BisI GCNGC 3 cut(s) 271, 483, 486
BlsI GCNGC 3 cut(s) 272, 484, 487
BmeT110I CYCGRG 1 cut(s) 918
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 931
BmsI GCATC 2 cut(s) 112, 859
Bpu10I CCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 841
BpuEI CTTGAG 3 cut(s) 12, 158, 491
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 213, 495
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 624, 654
Bse118I RCCGGY 1 cut(s) 932
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 213, 495
BseGI GGATG 3 cut(s) 505, 559, 859
BseJI GATNNNNATC 1 cut(s) 642
BseMII CTCAG 2 cut(s) 576, 695
BseRI GAGGAG 3 cut(s) 182, 395, 406
BseXI GCAGC 3 cut(s) 257, 472, 494
BshFI GGCC 3 cut(s) 117, 424, 545
BshNI GGYRCC 1 cut(s) 929
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 918
BsiSI CCGG 1 cut(s) 933
BsnI GGCC 3 cut(s) 117, 424, 545
BsoBI CYCGRG 1 cut(s) 918
Bsp119I TTCGAA 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 28, 174
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 5 cut(s) 46, 691, 699, 749, 811
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 3 cut(s) 38, 560, 671
BspANI GGCC 3 cut(s) 117, 424, 545
BspCNI CTCAG 2 cut(s) 577, 694
BspLI GGNNCC 1 cut(s) 931
BspMAI CTGCAG 1 cut(s) 880
BspPI GGATC 3 cut(s) 54, 686, 819
BspT104I TTCGAA 1 cut(s) 841
BspT107I GGYRCC 1 cut(s) 929
BspTI CTTAAG 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 932
BsrGI TGTACA 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 2 cut(s) 213, 495
BssMI GATC 5 cut(s) 46, 691, 699, 749, 811
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 304, 776
Bst6I CTCTTC 1 cut(s) 534
BstAFI CTTAAG 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 929
BstAUI TGTACA 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 3 cut(s) 338, 591, 934
BstDEI CTNAG 3 cut(s) 444, 585, 681
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 505, 559, 859
BstKTI GATC 5 cut(s) 49, 694, 702, 752, 814
BstMBI GATC 5 cut(s) 46, 691, 699, 749, 811
BstMWI GCNNNNNNNGC 4 cut(s) 169, 677, 686, 929
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 876
BstV1I GCAGC 3 cut(s) 257, 472, 494
BsuRI GGCC 3 cut(s) 117, 424, 545
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 3 cut(s) 505, 559, 859
BtsI GCAGTG 1 cut(s) 885
BtsIMutI CAGTG 3 cut(s) 26, 309, 885
Cac8I GCNNGC 3 cut(s) 338, 591, 934
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 5 cut(s) 56, 77, 164, 196, 214
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 444, 585, 681
DpnI GATC 5 cut(s) 48, 693, 701, 751, 813
DpnII GATC 5 cut(s) 46, 691, 699, 749, 811
DraI TTTAAA 1 cut(s) 780
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 2 cut(s) 28, 174
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 918
EcoICRI GAGCTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 28, 174
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 59, 80, 167, 199, 217
FaiI YATR 7 cut(s) 57, 78, 102, 165, 197, 215, 739
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 695, 727
FatI CATG 5 cut(s) 55, 76, 163, 195, 213
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 271, 483, 486
FokI GGATG 3 cut(s) 512, 566, 846
FriOI GRGCYC 2 cut(s) 28, 174
Fsp4HI GCNGC 3 cut(s) 271, 483, 486
FspBI CTAG 1 cut(s) 756
GluI GCNGC 3 cut(s) 271, 483, 486
HaeIII GGCC 3 cut(s) 117, 424, 545
HapII CCGG 1 cut(s) 933
Hin1II CATG 5 cut(s) 59, 80, 167, 199, 217
HindIII AAGCTT 2 cut(s) 458, 732
HinfI GANTC 4 cut(s) 13, 209, 233, 385
HpaII CCGG 1 cut(s) 933
HphI GGTGA 2 cut(s) 53, 628
Hpy188I TCNGA 9 cut(s) 12, 70, 232, 390, 499, 520, 597, 648, 684
Hpy188III TCNNGA 3 cut(s) 128, 584, 863
Hpy99I CGWCG 1 cut(s) 750
HpyAV CCTTC 4 cut(s) 28, 622, 892, 904
HpyCH4III ACNGT 2 cut(s) 304, 776
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 3 cut(s) 163, 273, 878
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 677, 686, 929
HpyF3I CTNAG 3 cut(s) 444, 585, 681
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 5 cut(s) 59, 80, 167, 199, 217
KroI GCCGGC 1 cut(s) 932
KroNI GCCGGC 1 cut(s) 934
Kzo9I GATC 5 cut(s) 46, 691, 699, 749, 811
LmnI GCTCC 2 cut(s) 130, 169
LpnPI CCDG 8 cut(s) 132, 141, 322, 438, 575, 597, 599, 876
Lsp1109I GCAGC 3 cut(s) 257, 472, 494
LweI GCATC 2 cut(s) 112, 859
MaeI CTAG 1 cut(s) 756
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 3 cut(s) 191, 571, 913
MalI GATC 5 cut(s) 48, 693, 701, 751, 813
MboI GATC 5 cut(s) 46, 691, 699, 749, 811
MboII GAAGA 3 cut(s) 8, 551, 855
MhlI GDGCHC 2 cut(s) 28, 174
MluCI AATT 2 cut(s) 295, 784
MlyI GAGTC 2 cut(s) 242, 394
MmeI TCCRAC 1 cut(s) 180
MroNI GCCGGC 1 cut(s) 932
MseI TTAA 5 cut(s) 111, 462, 527, 723, 779
MslI CAYNNNNRTG 2 cut(s) 824, 864
MspA1I CMGCKG 2 cut(s) 485, 802
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 933
MssI GTTTAAAC 1 cut(s) 780
MwoI GCNNNNNNNGC 4 cut(s) 169, 677, 686, 929
NaeI GCCGGC 1 cut(s) 934
NcoI CCATGG 1 cut(s) 213
NdeII GATC 5 cut(s) 46, 691, 699, 749, 811
NgoMIV GCCGGC 1 cut(s) 932
NlaIII CATG 5 cut(s) 59, 80, 167, 199, 217
NlaIV GGNNCC 1 cut(s) 931
NmuCI GTSAC 2 cut(s) 191, 913
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 841
OliI CACNNNNGTG 1 cut(s) 824
PceI AGGCCT 1 cut(s) 545
PciI ACATGT 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 934
PfeI GAWTC 2 cut(s) 13, 209
PkrI GCNGC 3 cut(s) 272, 484, 487
PleI GAGTC 2 cut(s) 241, 393
PmeI GTTTAAAC 1 cut(s) 780
PpsI GAGTC 2 cut(s) 241, 393
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 931
PspPI GGNCC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 880
PvuII CAGCTG 2 cut(s) 485, 802
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 2 cut(s) 824, 864
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 5 cut(s) 111, 462, 527, 723, 779
SatI GCNGC 3 cut(s) 271, 483, 486
Sau3AI GATC 5 cut(s) 46, 691, 699, 749, 811
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 242, 394
SduI GDGCHC 2 cut(s) 28, 174
SfaNI GCATC 2 cut(s) 112, 859
SfcI CTRYAG 1 cut(s) 876
SfuI TTCGAA 1 cut(s) 841
SmiMI CAYNNNNRTG 2 cut(s) 824, 864
SmlI CTYRAG 4 cut(s) 27, 173, 461, 506
SmoI CTYRAG 4 cut(s) 27, 173, 461, 506
Sse9I AATT 2 cut(s) 295, 784
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 3 cut(s) 38, 560, 671
SspMI CTAG 1 cut(s) 756
SstI GAGCTC 1 cut(s) 174
StuI AGGCCT 1 cut(s) 545
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 304, 776
TaiI ACGT 1 cut(s) 748
TaqI TCGA 5 cut(s) 49, 207, 236, 748, 841
TasI AATT 2 cut(s) 295, 784
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 2 cut(s) 13, 209
Tru1I TTAA 5 cut(s) 111, 462, 527, 723, 779
Tru9I TTAA 5 cut(s) 111, 462, 527, 723, 779
TscAI CASTG 3 cut(s) 26, 309, 885
TseFI GTSAC 2 cut(s) 191, 913
TseI GCWGC 3 cut(s) 270, 482, 485
Tsp45I GTSAC 2 cut(s) 191, 913
TspDTI ATGAA 6 cut(s) 44, 366, 641, 665, 870, 899
TspGWI ACGGA 2 cut(s) 590, 733
TspRI CASTG 3 cut(s) 26, 309, 885
Vha464I CTTAAG 1 cut(s) 461
VspI ATTAAT 1 cut(s) 723
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.