Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008845.1

Orthogroup ID

OG0004926

Physical Location & Seq

Genomic Coordinates Forward (+)

29475 .. 30542

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008845.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgaatcggcgacacaagtcggctgtgacgccgaaagaaatggagtcagagaaaatcggcgaggagttgaatccgagtagtactaacttgagcagccatgcgagtttgagtggaaatgagaatgggattggggatttctcaatggaaagtcagaatcttcagtgggctcaagggaaggctggtgaggatcgagttcattttgtggtttctgatgagcatggttgggtgtttgtggggatttatgatgggtttaatggccctgatgctcctaattatttgttgtcgaatctttactctgctgtgcatgaggagcccaatgaggagctcaaggggctgctgtggagtgacatgttggaaatcgaatccacgaaattgaaatcatcggatttgaatgtggtttcatgttcttttagtgaggttggctgcattgatggagttgataaggagaattgtacagtggagaatgtgttgagcaagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

160

Amino Acids

17.63

Weight (kDa)

4.62

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02400
fragaria_vesca	FvH4_6g13730
malus_domestica	MD04G1128600.v1.1 MD12G1141300.v1.1
prunus_persica	Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1 Prupe.6G254600_v2.0.a1
pyrus_communis	pycom04g11690
rosa_chinensis	RchiOBHm_Chr3g0466621 RchiOBHm_Chr3g0466691 RchiOBHm_Chr3g0466701
rosa_laevigata	RLG00000024560
rosa_multiflora	Rmu_co8411995.1_g000001 Rmu_sc0001726.1_g000001 Rmu_sc0008845.1_g000002 Rmu_sc0008845.1_g000005 Rmu_sc0023740.1_g000001 Rmu_sc0037733.1_g000001 Rmu_sc0039423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403980 Rroxscaffold_6G00414300 Rroxscaffold_6G00414310
rosa_rugosa	Rorug03G0083100
rosa_samantha	Rh3AG130000 Rh3AG130300 Rh3AG130400 Rh3BG151400 Rh3CG151200 Rh3DG152100
rosa_wichuraiana	Rw3G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	82, 454
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	70, 376, 391
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	93, 334, 423
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	3 cut(s)	169, 315, 327
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	105, 321, 410
BccI	CCATC	2 cut(s)	239, 425
BisI	GCNGC	3 cut(s)	94, 335, 424
BlsI	GCNGC	3 cut(s)	95, 336, 425
BmcAI	AGTACT	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	253
BoxI	GACNNNNGTC	1 cut(s)	16
BpuEI	CTTGAG	3 cut(s)	109, 153, 311
BsaHI	GRCGYC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
BseRI	GAGGAG	3 cut(s)	77, 323, 335
BseXI	GCAGC	3 cut(s)	105, 321, 410
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	3 cut(s)	169, 315, 327
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	452
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	476
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 331
BstNSI	RCATGY	1 cut(s)	352
BstPAI	GACNNNNGTC	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	105, 321, 410
BsuRI	GGCC	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	167, 462
Cac8I	GCNNGC	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	81, 453
CviAII	CATG	5 cut(s)	98, 218, 305, 349, 402
CviJI	RGCY	9 cut(s)	23, 96, 167, 179, 258, 313, 325, 334, 423
CviKI_1	RGCY	9 cut(s)	23, 96, 167, 179, 258, 313, 325, 334, 423
CviQI	GTAC	2 cut(s)	81, 453
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	3 cut(s)	169, 315, 327
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	325
EcoT38I	GRGCYC	3 cut(s)	169, 315, 327
FaeI	CATG	5 cut(s)	101, 221, 308, 352, 405
FaiI	YATR	6 cut(s)	99, 219, 243, 306, 350, 403
FatI	CATG	5 cut(s)	97, 217, 304, 348, 401
Fnu4HI	GCNGC	3 cut(s)	94, 335, 424
FriOI	GRGCYC	3 cut(s)	169, 315, 327
Fsp4HI	GCNGC	3 cut(s)	94, 335, 424
GluI	GCNGC	3 cut(s)	94, 335, 424
HaeIII	GGCC	1 cut(s)	258
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	101, 221, 308, 352, 405
HinfI	GANTC	6 cut(s)	4, 44, 70, 154, 286, 362
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	5 cut(s)	49, 75, 153, 211, 385
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	2 cut(s)	304, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 331
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	5 cut(s)	101, 221, 308, 352, 405
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	3 cut(s)	271, 310, 322
LpnPI	CCDG	2 cut(s)	165, 273
Lsp1109I	GCAGC	3 cut(s)	105, 321, 410
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	25, 344
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	3 cut(s)	169, 315, 327
MluCI	AATT	3 cut(s)	271, 371, 448
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	55, 178, 301, 313, 409
MseI	TTAA	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	310, 331
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	101, 221, 308, 352, 405
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	25, 344
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PfeI	GAWTC	5 cut(s)	4, 70, 154, 286, 362
PkrI	GCNGC	3 cut(s)	95, 336, 425
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	82, 454
RsaNI	GTAC	2 cut(s)	81, 453
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	94, 335, 424
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	3 cut(s)	169, 315, 327
SetI	ASST	2 cut(s)	327, 420
SfaNI	GCATC	1 cut(s)	253
SmlI	CTYRAG	3 cut(s)	88, 168, 326
SmoI	CTYRAG	3 cut(s)	88, 168, 326
Sse9I	AATT	3 cut(s)	271, 371, 448
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	190, 284, 360
TasI	AATT	3 cut(s)	271, 371, 448
TatI	WGTACW	2 cut(s)	80, 452
TfiI	GAWTC	5 cut(s)	4, 70, 154, 286, 362
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	167, 462
TseFI	GTSAC	2 cut(s)	25, 344
TseI	GCWGC	3 cut(s)	93, 334, 423
Tsp45I	GTSAC	2 cut(s)	25, 344
TspDTI	ATGAA	3 cut(s)	17, 185, 390
TspRI	CASTG	2 cut(s)	167, 462
XceI	RCATGY	1 cut(s)	352
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.