RchiOBHm_Chr3g0476351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005938
Physical Location & Seq
Forward (+)
22279449 .. 22282474
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44178

Sequence Viewer

Length: 534 bp
ATGGCGAGTCGGTCGTCTCCGTCGTCTCCACCGTCCTCTGCTTCCAACTCCGACCACTACCCCACTCAACCCACCTCGACCCGATCCACCAAAAATGCGGGGCTCTCTTGCCCCGATCTTGGCCCTCCTCGCCCTCCTAATTTGCCCCTCTCCTCCACTAGGCTCACCTCCCCGCGGCCTCCACCACTTTTCTCTCTCTCCACAAAGCCTTCCTGCCAACCCACCACCAAGTCCAACTCGACCGCCGCCACCGCCCATGTCCTCCACTGGCCTTCAAGAGGACATGGGACGCAGTTCCATATTTTTGCAATGAATGTTTCTGTCCCAATTTTAATTCAATGCAAGCAATTCAACTATTTTTTCGAGCCGGGTTTACTGAAGGTTTGGGTGCACAAGAAGAATGGAAGAGTGGGTTTGTGGGTTGAAGATTTAAGGAGGATGTTTGTGGGGTTTGCGGTTTTAGCAAAGCAAAATGAGTTTGATGGGACATGCTGGGAAGCGAAGAGCCTTTGGCAGAGTCAGAGTCGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.56

Weight (kDa)

10.11

Isoelectric Point (pI)

69.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 175
AciI CCGC 7 cut(s) 98, 173, 175, 243, 246, 252, 455
AclWI GGATC 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 398
AfiI CCNNNNNNNGG 4 cut(s) 119, 159, 174, 278
AgsI TTSAA 4 cut(s) 276, 338, 352, 425
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 21, 30
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 1 cut(s) 78
AoxI GGCC 3 cut(s) 121, 176, 269
ApaLI GTGCAC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 393
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 393
BccI CCATC 1 cut(s) 476
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 21, 30
BfaI CTAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 176, 246
BlsI GCNGC 2 cut(s) 177, 247
Bme1390I CCNGG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 159, 174, 278
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 119, 159, 174, 278
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 117, 142
BseSI GKGCMC 1 cut(s) 393
BseYI CCCAGC 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 2 cut(s) 14, 243
BshFI GGCC 3 cut(s) 123, 178, 271
BsiEI CGRYCG 2 cut(s) 14, 243
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 3 cut(s) 301, 308, 499
BslI CCNNNNNNNGG 4 cut(s) 119, 159, 174, 278
BsmAI GTCTC 2 cut(s) 21, 30
BsmBI CGTCTC 2 cut(s) 21, 30
BsmFI GGGAC 3 cut(s) 301, 308, 499
BsnI GGCC 3 cut(s) 123, 178, 271
Bsp1286I GDGCHC 2 cut(s) 105, 393
Bsp143I GATC 2 cut(s) 83, 115
BspACI CCGC 7 cut(s) 98, 173, 175, 243, 246, 252, 455
BspANI GGCC 3 cut(s) 123, 178, 271
BspFNI CGCG 1 cut(s) 175
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 2 cut(s) 83, 115
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 2 cut(s) 400, 497
BstC8I GCNNGC 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 173
BstENI CCTNNNNNAGG 2 cut(s) 157, 276
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 2 cut(s) 86, 118
BstMAI GTCTC 2 cut(s) 21, 30
BstMBI GATC 2 cut(s) 83, 115
BstMCI CGRYCG 2 cut(s) 14, 243
BstMWI GCNNNNNNNGC 3 cut(s) 129, 251, 461
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 1 cut(s) 175
BsuRI GGCC 3 cut(s) 123, 178, 271
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 122
Cfr42I CCGCGG 1 cut(s) 176
CseI GACGC 1 cut(s) 298
CviAII CATG 3 cut(s) 257, 284, 489
CviJI RGCY 8 cut(s) 103, 123, 163, 178, 208, 271, 367, 507
CviKI_1 RGCY 8 cut(s) 103, 123, 163, 178, 208, 271, 367, 507
DpnI GATC 2 cut(s) 85, 117
DpnII GATC 2 cut(s) 83, 115
Eam1104I CTCTTC 2 cut(s) 400, 497
EarI CTCTTC 2 cut(s) 400, 497
Eco24I GRGCYC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 398
EcoNI CCTNNNNNAGG 2 cut(s) 157, 276
EcoT38I GRGCYC 1 cut(s) 105
Esp3I CGTCTC 2 cut(s) 21, 30
FaeI CATG 3 cut(s) 260, 287, 492
FaiI YATR 4 cut(s) 258, 285, 300, 490
FaqI GGGAC 3 cut(s) 301, 308, 499
FatI CATG 3 cut(s) 256, 283, 488
FauI CCCGC 2 cut(s) 91, 180
Fnu4HI GCNGC 2 cut(s) 176, 246
FokI GGATG 1 cut(s) 451
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 176, 246
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 176, 246
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 3 cut(s) 123, 178, 271
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 298
Hin1II CATG 3 cut(s) 260, 287, 492
HinfI GANTC 3 cut(s) 7, 517, 523
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 374, 391
Hpy188I TCNGA 2 cut(s) 52, 522
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 374, 391
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 219, 282, 373
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 308, 342, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 251, 461
Hsp92II CATG 3 cut(s) 260, 287, 492
KspI CCGCGG 1 cut(s) 176
Kzo9I GATC 2 cut(s) 83, 115
LguI GCTCTTC 1 cut(s) 497
LpnPI CCDG 4 cut(s) 226, 253, 381, 478
MaeI CTAG 1 cut(s) 159
MalI GATC 2 cut(s) 85, 117
MboI GATC 2 cut(s) 83, 115
MboII GAAGA 4 cut(s) 409, 417, 437, 514
MhlI GDGCHC 2 cut(s) 105, 393
MluCI AATT 4 cut(s) 139, 327, 333, 347
MlyI GAGTC 3 cut(s) 16, 526, 532
MmeI TCCRAC 3 cut(s) 69, 75, 258
MseI TTAA 2 cut(s) 332, 431
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 3 cut(s) 129, 251, 461
NciI CCSGG 1 cut(s) 369
NdeII GATC 2 cut(s) 83, 115
NlaIII CATG 3 cut(s) 260, 287, 492
NspI RCATGY 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 29
PkrI GCNGC 2 cut(s) 177, 247
PleI GAGTC 3 cut(s) 15, 525, 531
PpsI GAGTC 3 cut(s) 15, 525, 531
PspFI CCCAGC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 122
SacII CCGCGG 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 2 cut(s) 332, 431
SatI GCNGC 2 cut(s) 176, 246
Sau3AI GATC 2 cut(s) 83, 115
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 3 cut(s) 16, 526, 532
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 2 cut(s) 105, 393
SetI ASST 3 cut(s) 77, 170, 384
Sfr303I CCGCGG 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 176
Sse9I AATT 4 cut(s) 139, 327, 333, 347
SsiI CCGC 7 cut(s) 98, 173, 175, 243, 246, 252, 455
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 77, 239, 363
TasI AATT 4 cut(s) 139, 327, 333, 347
TauI GCSGC 2 cut(s) 178, 248
Tru1I TTAA 2 cut(s) 332, 431
Tru9I TTAA 2 cut(s) 332, 431
TscAI CASTG 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 389
XagI CCTNNNNNAGG 2 cut(s) 157, 276
XceI RCATGY 1 cut(s) 492
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.