Rh5AG186000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005938
Physical Location & Seq
Reverse (-)
21258651 .. 21258965
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG186000.1

Sequence Viewer

Length: 315 bp
ATGCAGATGGACCTTGGGCTCTTCGACGACGGCGGAGATGAGATCAGAGATGAGAGGGTCCGTCGTCCTCCTAATCTGGCCCTCTCCTCCACTGGGCTCACCTCACCGCCACCACTTTTCTCTCTCTCCACAGAGCCTTCCCGCCGACCCACCACCGAGTCCAACTCGATCGCCGCCGCAGCCCATGTCCTCCACCAGCCTCCAAGAGGACATGGGCGACAGTTCCATCTTTTTGCAATGAATGTATCTGTCCCAATTTTAATTCAGTGCAAGCAAATTCAACTACTTTGGTTGTTGGTTATGCTTGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.57

Weight (kDa)

6.39

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 33, 107, 142, 174, 177
AcsI RAATTY 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 93, 206
AgsI TTSAA 1 cut(s) 281
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 3 cut(s) 10, 58, 79
AsuHPI GGTGA 2 cut(s) 91, 96
AvaII GGWCC 2 cut(s) 10, 58
BanII GRGCYC 2 cut(s) 21, 99
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 234
BceAI ACGGC 1 cut(s) 46
BisI GCNGC 3 cut(s) 174, 177, 180
BlsI GCNGC 3 cut(s) 175, 178, 181
Bme18I GGWCC 2 cut(s) 10, 58
BmgT120I GGNCC 3 cut(s) 10, 58, 79
BmiI GGNNCC 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 206
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 93, 206
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 93, 206
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 21, 99
Bsp143I GATC 2 cut(s) 42, 168
BspACI CCGC 5 cut(s) 33, 107, 142, 174, 177
BspANI GGCC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 42, 168
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 204
BstKTI GATC 2 cut(s) 45, 171
BstMBI GATC 2 cut(s) 42, 168
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 90, 272
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 10, 58, 79
CviAII CATG 2 cut(s) 185, 212
CviJI RGCY 6 cut(s) 19, 80, 97, 136, 182, 199
CviKI_1 RGCY 6 cut(s) 19, 80, 97, 136, 182, 199
DpnI GATC 2 cut(s) 44, 170
DpnII GATC 2 cut(s) 42, 168
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 21, 99
Eco47I GGWCC 2 cut(s) 10, 58
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 21, 99
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 188, 215
FaiI YATR 4 cut(s) 186, 213, 302, 313
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 184, 211
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 174, 177, 180
FriOI GRGCYC 2 cut(s) 21, 99
Fsp4HI GCNGC 3 cut(s) 174, 177, 180
GluI GCNGC 3 cut(s) 174, 177, 180
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 2 cut(s) 188, 215
HinfI GANTC 1 cut(s) 158
HphI GGTGA 2 cut(s) 91, 96
Hpy188I TCNGA 1 cut(s) 47
Hpy99I CGWCG 3 cut(s) 29, 32, 66
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 4, 236, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 188, 215
Kzo9I GATC 2 cut(s) 42, 168
LguI GCTCTTC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 62, 78, 209
Lsp1109I GCAGC 1 cut(s) 191
MalI GATC 2 cut(s) 44, 170
MboI GATC 2 cut(s) 42, 168
MboII GAAGA 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 21, 99
MluCI AATT 3 cut(s) 255, 261, 276
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 8 cut(s) 48, 78, 92, 97, 112, 200, 200, 210
MseI TTAA 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 42, 168
NlaIII CATG 2 cut(s) 188, 215
NlaIV GGNNCC 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 26
PkrI GCNGC 3 cut(s) 175, 178, 181
Ple19I CGATCG 1 cut(s) 171
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 3 cut(s) 10, 58, 79
PvuI CGATCG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 3 cut(s) 174, 177, 180
Sau3AI GATC 2 cut(s) 42, 168
Sau96I GGNCC 3 cut(s) 10, 58, 79
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 2 cut(s) 21, 99
SetI ASST 2 cut(s) 15, 104
SinI GGWCC 2 cut(s) 10, 58
Sse9I AATT 3 cut(s) 255, 261, 276
SsiI CCGC 5 cut(s) 33, 107, 142, 174, 177
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 24, 167
TasI AATT 3 cut(s) 255, 261, 276
TauI GCSGC 2 cut(s) 176, 179
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 2 cut(s) 97, 272
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 97, 272
VpaK11BI GGWCC 2 cut(s) 10, 58
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.